Wall clock time and date at job start Tue Mar 31 2020 15:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30778 * 1 3 3 Si 1.86798 * 119.99939 * 2 1 4 4 H 1.48499 * 109.46913 * 269.99587 * 3 2 1 5 5 H 1.48490 * 109.47485 * 29.99974 * 3 2 1 6 6 H 1.48504 * 109.47162 * 150.00066 * 3 2 1 7 7 C 1.40063 * 119.99818 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99929 * 195.47532 * 7 2 1 9 9 C 1.40870 * 120.00088 * 15.47367 * 7 2 1 10 10 C 1.40756 * 120.32862 * 25.31650 * 9 7 2 11 11 C 1.36425 * 119.98363 * 179.97438 * 10 9 7 12 12 C 1.38936 * 120.69414 * 359.97438 * 11 10 9 13 13 C 1.50703 * 119.66233 * 180.02562 * 12 11 10 14 14 F 1.39894 * 109.47180 * 269.98300 * 13 12 11 15 15 F 1.39900 * 109.46609 * 29.98206 * 13 12 11 16 16 F 1.39898 * 109.47151 * 149.97912 * 13 12 11 17 17 C 1.38068 * 120.68024 * 0.02562 * 12 11 10 18 18 C 1.39193 * 119.97679 * 359.97438 * 17 12 11 19 19 C 1.47829 * 120.33569 * 179.97438 * 18 17 12 20 20 C 1.39695 * 120.15154 * 65.00243 * 19 18 17 21 21 C 1.37866 * 119.91762 * 179.97438 * 20 19 18 22 22 C 1.38443 * 120.23341 * 359.97438 * 21 20 19 23 23 C 1.38495 * 120.30495 * 359.97438 * 22 21 20 24 24 F 1.35093 * 119.95864 * 180.02562 * 23 22 21 25 25 C 1.38424 * 120.07540 * 359.74626 * 23 22 21 26 26 F 1.35106 * 120.11635 * 180.27265 * 25 23 22 27 27 H 0.97004 * 120.00036 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.00906 * 359.95616 * 10 9 7 29 29 H 1.08002 * 119.65053 * 179.97438 * 11 10 9 30 30 H 1.07997 * 120.00990 * 179.71844 * 17 12 11 31 31 H 1.07997 * 120.04147 * 359.95021 * 20 19 18 32 32 H 1.08000 * 119.88433 * 180.02562 * 21 20 19 33 33 H 1.08001 * 119.84777 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2418 1.6177 0.0000 4 1 2.4893 2.0463 -1.4001 5 1 1.4393 2.6526 0.7000 6 1 3.5394 1.4402 0.7000 7 6 2.0081 -1.2130 0.0005 8 1 3.0587 -1.2299 0.2501 9 6 1.3420 -2.4110 -0.3244 10 6 0.1921 -2.3874 -1.1358 11 6 -0.4472 -3.5518 -1.4466 12 6 0.0247 -4.7688 -0.9704 13 6 -0.6993 -6.0411 -1.3286 14 9 -1.6782 -6.3076 -0.3654 15 9 -1.3049 -5.8960 -2.5813 16 9 0.2133 -7.1006 -1.3717 17 6 1.1500 -4.8245 -0.1724 18 6 1.8241 -3.6536 0.1621 19 6 3.0295 -3.7040 1.0164 20 6 4.1859 -4.3422 0.5613 21 6 5.3074 -4.3859 1.3619 22 6 5.2923 -3.7989 2.6156 23 6 4.1514 -3.1628 3.0758 24 9 4.1445 -2.5919 4.3001 25 6 3.0200 -3.1064 2.2802 26 9 1.9083 -2.4813 2.7261 27 1 -0.4850 0.8401 -0.0004 28 1 -0.1842 -1.4476 -1.5121 29 1 -1.3292 -3.5274 -2.0693 30 1 1.5047 -5.7759 0.1955 31 1 4.2011 -4.8010 -0.4162 32 1 6.2013 -4.8790 1.0094 33 1 6.1743 -3.8372 3.2378 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239707477.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:50 Heat of formation + Delta-G solvation = -217.747269 kcal Electronic energy + Delta-G solvation = -27632.860821 eV Core-core repulsion = 22843.255102 eV Total energy + Delta-G solvation = -4789.605719 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -50.95273 -50.31087 -49.36343 -48.47684 -48.42563 -40.29472 -38.90806 -35.91752 -33.63583 -32.10311 -31.13164 -29.96638 -28.57886 -25.58537 -24.54592 -23.55977 -22.71571 -21.84815 -19.48247 -19.29125 -19.19731 -19.11219 -18.46959 -17.92568 -17.50078 -17.31090 -17.08250 -15.96723 -15.88484 -15.66643 -15.55128 -15.36455 -15.32401 -15.08035 -15.01743 -14.92096 -14.69362 -14.63261 -14.30018 -14.04981 -13.87743 -13.49625 -13.07841 -13.04329 -12.90154 -12.78283 -12.63037 -12.38921 -12.15751 -11.76529 -11.46957 -11.22752 -9.96630 -9.64280 -9.59215 -9.31259 -8.82830 -6.56909 0.06138 0.11431 0.59466 0.95105 1.32655 1.40686 1.45158 1.96737 2.09892 2.44661 2.58043 2.96452 3.19779 3.35408 3.38074 3.54527 3.77380 3.81408 4.05418 4.14711 4.27089 4.33756 4.44742 4.93348 4.97877 4.98126 5.05570 5.14594 5.20641 5.29841 5.39762 5.48566 5.61115 5.80153 5.87446 5.97813 6.10276 6.44408 6.69566 6.76470 8.09344 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.010021 B = 0.005888 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2793.488181 B = 4754.512403 C = 6695.882886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.039 3.961 3 Si 0.974 3.026 4 H -0.251 1.251 5 H -0.267 1.267 6 H -0.261 1.261 7 C -0.444 4.444 8 H 0.079 0.921 9 C 0.123 3.877 10 C -0.183 4.183 11 C -0.057 4.057 12 C -0.325 4.325 13 C 0.525 3.475 14 F -0.194 7.194 15 F -0.187 7.187 16 F -0.185 7.185 17 C -0.014 4.014 18 C -0.204 4.204 19 C -0.016 4.016 20 C -0.102 4.102 21 C -0.084 4.084 22 C -0.128 4.128 23 C 0.039 3.961 24 F -0.145 7.145 25 C 0.047 3.953 26 F -0.145 7.145 27 H 0.296 0.704 28 H 0.117 0.883 29 H 0.114 0.886 30 H 0.123 0.877 31 H 0.151 0.849 32 H 0.184 0.816 33 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.395 -5.363 -0.002 9.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.181 4.181 3 Si 0.794 3.206 4 H -0.175 1.175 5 H -0.191 1.191 6 H -0.185 1.185 7 C -0.471 4.471 8 H 0.097 0.903 9 C 0.120 3.880 10 C -0.202 4.202 11 C -0.075 4.075 12 C -0.328 4.328 13 C 0.471 3.529 14 F -0.176 7.176 15 F -0.169 7.169 16 F -0.166 7.166 17 C -0.032 4.032 18 C -0.205 4.205 19 C -0.017 4.017 20 C -0.120 4.120 21 C -0.102 4.102 22 C -0.147 4.147 23 C 0.019 3.981 24 F -0.124 7.124 25 C 0.027 3.973 26 F -0.124 7.124 27 H 0.108 0.892 28 H 0.135 0.865 29 H 0.132 0.868 30 H 0.141 0.859 31 H 0.169 0.831 32 H 0.201 0.799 33 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 8.097 -5.189 0.074 9.617 hybrid contribution -0.845 0.986 0.415 1.363 sum 7.252 -4.203 0.489 8.396 Atomic orbital electron populations 1.69801 1.08995 1.31509 1.31448 1.26830 0.95521 1.04703 0.91020 0.85293 0.79178 0.75935 0.80176 1.17522 1.19092 1.18452 1.19802 0.97456 0.91619 1.38195 0.90333 1.17929 0.90697 0.92026 0.87352 1.21011 0.99658 0.97064 1.02483 1.20317 0.98165 0.91574 0.97487 1.19148 1.04759 0.91416 1.17452 1.18189 0.76549 0.84475 0.73671 1.93148 1.65026 1.94958 1.64468 1.93103 1.84614 1.95919 1.43227 1.93103 1.67030 1.60251 1.96232 1.20454 0.92379 0.97044 0.93363 1.18450 1.00801 0.93351 1.07903 1.18759 0.95558 0.96880 0.90485 1.21610 0.90797 0.98401 1.01191 1.21405 0.99130 0.97719 0.91929 1.21426 0.96282 0.98482 0.98497 1.17977 0.95628 1.02646 0.81807 1.91447 1.97084 1.83268 1.40609 1.18354 0.83411 1.00539 0.94990 1.91466 1.51369 1.80430 1.89114 0.89236 0.86488 0.86836 0.85867 0.83107 0.79906 0.80746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -38.58 10.87 21.85 0.24 -38.34 16 2 C 0.04 1.81 5.18 85.29 0.44 2.26 16 3 Si 0.97 35.86 29.59 68.60 2.03 37.89 16 4 H -0.25 -8.72 7.11 99.48 0.71 -8.01 16 5 H -0.27 -9.45 7.11 99.48 0.71 -8.75 16 6 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 7 C -0.44 -21.87 7.47 23.36 0.17 -21.69 16 8 H 0.08 3.82 7.07 -2.91 -0.02 3.80 16 9 C 0.12 6.11 5.46 -21.12 -0.12 5.99 16 10 C -0.18 -8.95 8.63 22.46 0.19 -8.76 16 11 C -0.06 -2.52 9.31 22.01 0.20 -2.32 16 12 C -0.33 -13.71 5.47 -19.74 -0.11 -13.81 16 13 C 0.52 19.65 3.36 71.24 0.24 19.89 16 14 F -0.19 -7.38 17.30 44.97 0.78 -6.60 16 15 F -0.19 -6.77 16.43 44.97 0.74 -6.03 16 16 F -0.18 -6.43 16.43 44.97 0.74 -5.69 16 17 C -0.01 -0.59 9.07 22.46 0.20 -0.39 16 18 C -0.20 -9.10 5.06 -19.61 -0.10 -9.20 16 19 C -0.02 -0.62 4.40 -20.01 -0.09 -0.70 16 20 C -0.10 -2.94 9.74 22.53 0.22 -2.72 16 21 C -0.08 -1.80 10.03 22.23 0.22 -1.58 16 22 C -0.13 -3.09 10.02 22.38 0.22 -2.86 16 23 C 0.04 1.34 7.30 22.38 0.16 1.50 16 24 F -0.15 -5.13 17.18 44.97 0.77 -4.35 16 25 C 0.05 1.94 6.49 22.69 0.15 2.08 16 26 F -0.15 -7.09 16.03 44.97 0.72 -6.37 16 27 H 0.30 12.94 8.30 -92.71 -0.77 12.18 16 28 H 0.12 5.90 6.12 -2.91 -0.02 5.88 16 29 H 0.11 4.60 7.57 -2.91 -0.02 4.58 16 30 H 0.12 4.53 7.58 -2.91 -0.02 4.51 16 31 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 32 H 0.18 2.15 8.06 -2.91 -0.02 2.13 16 33 H 0.18 2.83 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -57.07 312.94 9.24 -47.83 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 1.20 Total: 13.98 kcal Atomic # 6 Polarization: -34.34 SS G_CDS: 2.02 Total: -32.32 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.24 Total: -38.34 kcal Atomic # 9 Polarization: -32.79 SS G_CDS: 3.75 Total: -29.04 kcal Atomic # 14 Polarization: 35.86 SS G_CDS: 2.03 Total: 37.89 kcal Total: -57.07 9.24 -47.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239707477.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.920 kcal (2) G-P(sol) polarization free energy of solvation -57.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds