Wall clock time and date at job start Tue Mar 31 2020 15:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30805 * 1 3 3 Si 1.86803 * 119.99410 * 2 1 4 4 H 1.48495 * 109.47345 * 85.19793 * 3 2 1 5 5 H 1.48504 * 109.47171 * 205.19531 * 3 2 1 6 6 H 1.48497 * 109.47359 * 325.19221 * 3 2 1 7 7 C 1.39991 * 120.00641 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00277 * 196.70865 * 7 2 1 9 9 C 1.41010 * 120.00105 * 16.70908 * 7 2 1 10 10 C 1.40960 * 120.11657 * 26.11439 * 9 7 2 11 11 C 1.36210 * 119.88372 * 179.97438 * 10 9 7 12 12 C 1.39986 * 120.11861 * 0.02562 * 11 10 9 13 13 C 1.47937 * 119.88655 * 179.97438 * 12 11 10 14 14 C 1.39607 * 120.14666 * 129.72232 * 13 12 11 15 15 C 1.38092 * 119.85077 * 179.72322 * 14 13 12 16 16 F 1.35104 * 119.92173 * 180.30083 * 15 14 13 17 17 C 1.38656 * 120.15584 * 0.58010 * 15 14 13 18 18 C 1.38275 * 120.29645 * 359.67598 * 17 15 14 19 19 C 1.38223 * 120.14414 * 0.04551 * 18 17 15 20 20 F 1.35099 * 120.07376 * 179.97438 * 19 18 17 21 21 C 1.39946 * 120.23362 * 359.95883 * 12 11 10 22 22 C 1.36257 * 120.11490 * 359.78036 * 21 12 11 23 23 C 1.50708 * 120.05746 * 180.23658 * 22 21 12 24 24 F 1.39898 * 109.46851 * 0.25873 * 23 22 21 25 25 F 1.39897 * 109.46906 * 120.25998 * 23 22 21 26 26 F 1.39899 * 109.46795 * 240.25829 * 23 22 21 27 27 H 0.96996 * 120.00281 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.05538 * 359.95648 * 10 9 7 29 29 H 1.08006 * 119.94551 * 180.02562 * 11 10 9 30 30 H 1.08002 * 120.06788 * 0.02562 * 14 13 12 31 31 H 1.07998 * 119.84995 * 179.69945 * 17 15 14 32 32 H 1.08005 * 119.92979 * 180.02562 * 18 17 15 33 33 H 1.07998 * 119.94384 * 180.02562 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2419 1.6179 0.0000 4 1 2.3879 2.1052 1.3951 5 1 3.5866 1.4133 -0.5960 6 1 1.4938 2.6213 -0.7992 7 6 2.0081 -1.2123 -0.0005 8 1 3.0540 -1.2321 0.2684 9 6 1.3479 -2.4076 -0.3522 10 6 0.2221 -2.3708 -1.1997 11 6 -0.4117 -3.5284 -1.5367 12 6 0.0527 -4.7531 -1.0426 13 6 -0.6400 -6.0072 -1.4115 14 6 0.0886 -7.0925 -1.9015 15 6 -0.5635 -8.2622 -2.2386 16 9 0.1409 -9.3155 -2.7072 17 6 -1.9402 -8.3562 -2.1028 18 6 -2.6687 -7.2832 -1.6231 19 6 -2.0279 -6.1086 -1.2766 20 9 -2.7411 -5.0610 -0.8085 21 6 1.1701 -4.7954 -0.2011 22 6 1.8146 -3.6437 0.1379 23 6 3.0209 -3.6913 1.0399 24 9 3.2879 -5.0187 1.3919 25 9 4.1257 -3.1553 0.3696 26 9 2.7689 -2.9440 2.1954 27 1 -0.4850 0.8400 -0.0004 28 1 -0.1373 -1.4264 -1.5809 29 1 -1.2741 -3.5014 -2.1864 30 1 1.1604 -7.0191 -2.0121 31 1 -2.4457 -9.2717 -2.3724 32 1 -3.7407 -7.3631 -1.5192 33 1 1.5246 -5.7428 0.1771 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239711725.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:32 Heat of formation + Delta-G solvation = -209.939391 kcal Electronic energy + Delta-G solvation = -27322.840550 eV Core-core repulsion = 22533.573405 eV Total energy + Delta-G solvation = -4789.267144 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.16553 -48.78148 -48.46325 -46.74838 -46.53524 -38.85183 -37.58366 -34.28890 -32.09486 -30.70275 -29.85734 -28.99437 -26.07003 -24.65634 -22.98962 -22.32845 -21.01915 -20.37862 -17.97817 -17.62707 -17.46048 -17.38872 -17.12667 -16.72076 -16.21149 -15.65712 -15.45922 -15.00800 -14.46543 -14.23485 -14.05725 -13.89014 -13.55287 -13.54319 -13.39046 -13.13012 -13.00024 -12.90270 -12.79726 -12.67390 -12.36394 -12.11171 -11.90969 -11.59190 -11.34831 -11.34036 -11.20587 -10.81836 -10.63453 -10.12463 -9.83168 -9.59952 -8.96996 -8.38828 -8.06460 -7.57650 -7.20396 -4.81866 1.11928 1.21300 2.34936 2.56569 2.89606 2.91359 2.98433 3.61216 3.66799 3.79457 4.20268 4.34179 4.49152 4.82437 4.94271 5.02746 5.08760 5.15119 5.30779 5.38075 5.62637 5.86037 5.98151 6.10282 6.15990 6.22699 6.30824 6.38159 6.65293 6.75220 6.89332 7.01408 7.13205 7.34362 7.53522 7.64543 7.78715 8.15812 8.36524 8.44624 9.71241 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.015090 B = 0.004268 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.126321 B = 6559.509056 C = 7808.604058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.761 5.761 2 C 0.076 3.924 3 Si 0.916 3.084 4 H -0.264 1.264 5 H -0.254 1.254 6 H -0.270 1.270 7 C -0.431 4.431 8 H 0.093 0.907 9 C 0.152 3.848 10 C -0.158 4.158 11 C -0.051 4.051 12 C -0.216 4.216 13 C 0.012 3.988 14 C -0.136 4.136 15 C 0.089 3.911 16 F -0.143 7.143 17 C -0.153 4.153 18 C -0.124 4.124 19 C 0.080 3.920 20 F -0.129 7.129 21 C -0.005 4.005 22 C -0.308 4.308 23 C 0.522 3.478 24 F -0.200 7.200 25 F -0.190 7.190 26 F -0.183 7.183 27 H 0.291 0.709 28 H 0.127 0.873 29 H 0.097 0.903 30 H 0.142 0.858 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.223 -7.022 -2.641 7.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.383 5.383 2 C -0.147 4.147 3 Si 0.738 3.262 4 H -0.189 1.189 5 H -0.178 1.178 6 H -0.195 1.195 7 C -0.458 4.458 8 H 0.111 0.889 9 C 0.149 3.851 10 C -0.177 4.177 11 C -0.070 4.070 12 C -0.217 4.217 13 C 0.011 3.989 14 C -0.155 4.155 15 C 0.070 3.930 16 F -0.121 7.121 17 C -0.172 4.172 18 C -0.143 4.143 19 C 0.060 3.940 20 F -0.108 7.108 21 C -0.023 4.023 22 C -0.311 4.311 23 C 0.468 3.532 24 F -0.181 7.181 25 F -0.171 7.171 26 F -0.165 7.165 27 H 0.102 0.898 28 H 0.145 0.855 29 H 0.115 0.885 30 H 0.160 0.840 31 H 0.154 0.846 32 H 0.157 0.843 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.404 -6.843 -2.593 7.703 hybrid contribution 0.408 0.673 0.244 0.824 sum -1.996 -6.170 -2.349 6.897 Atomic orbital electron populations 1.69792 1.07912 1.30615 1.29965 1.26101 0.94867 1.02169 0.91604 0.86138 0.80929 0.79381 0.79717 1.18898 1.17755 1.19486 1.20007 0.98493 0.91062 1.36213 0.88875 1.17270 0.90384 0.90396 0.87085 1.20942 0.98788 0.97221 1.00784 1.20513 0.97258 0.91822 0.97409 1.17655 1.02070 0.90456 1.11548 1.18777 0.90566 0.94249 0.95345 1.21208 1.01278 0.91386 1.01650 1.17589 0.89816 0.84735 1.00842 1.91480 1.78880 1.55429 1.86336 1.20800 0.92004 1.00040 1.04335 1.20825 1.00691 0.91739 1.01038 1.17880 0.89489 0.85188 1.01422 1.91516 1.77581 1.55694 1.85985 1.20067 0.92374 0.96016 0.93865 1.19234 1.02846 0.96654 1.12379 1.18286 0.83810 0.71780 0.79332 1.93043 1.94949 1.37158 1.92989 1.93106 1.57156 1.86299 1.80552 1.93147 1.94241 1.77044 1.52021 0.89795 0.85522 0.88467 0.84048 0.84551 0.84339 0.87557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.62 10.98 55.55 0.61 -17.01 16 2 C 0.08 1.72 5.14 -17.33 -0.09 1.63 16 3 Si 0.92 17.03 29.59 -169.99 -5.03 12.00 16 4 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 5 H -0.25 -4.74 7.11 56.52 0.40 -4.34 16 6 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 7 C -0.43 -10.45 7.79 -37.88 -0.30 -10.74 16 8 H 0.09 2.23 6.03 -52.49 -0.32 1.92 16 9 C 0.15 3.72 5.54 -106.80 -0.59 3.13 16 10 C -0.16 -3.72 8.62 -39.28 -0.34 -4.06 16 11 C -0.05 -1.10 8.79 -39.66 -0.35 -1.45 16 12 C -0.22 -4.45 5.34 -104.63 -0.56 -5.01 16 13 C 0.01 0.21 5.47 -104.83 -0.57 -0.37 16 14 C -0.14 -2.14 9.49 -39.12 -0.37 -2.51 16 15 C 0.09 1.27 7.29 -39.48 -0.29 0.98 16 16 F -0.14 -2.00 17.26 2.25 0.04 -1.96 16 17 C -0.15 -1.89 10.02 -39.41 -0.39 -2.28 16 18 C -0.12 -1.62 10.01 -39.57 -0.40 -2.02 16 19 C 0.08 1.31 7.16 -39.00 -0.28 1.04 16 20 F -0.13 -2.35 15.88 2.25 0.04 -2.31 16 21 C 0.00 -0.10 8.83 -39.65 -0.35 -0.45 16 22 C -0.31 -7.09 5.38 -104.32 -0.56 -7.65 16 23 C 0.52 11.34 2.82 36.01 0.10 11.44 16 24 F -0.20 -3.99 15.95 2.25 0.04 -3.96 16 25 F -0.19 -4.08 15.67 2.25 0.04 -4.05 16 26 F -0.18 -4.12 16.49 2.25 0.04 -4.08 16 27 H 0.29 6.03 8.30 -40.82 -0.34 5.69 16 28 H 0.13 3.01 6.22 -52.49 -0.33 2.69 16 29 H 0.10 1.94 7.77 -52.48 -0.41 1.53 16 30 H 0.14 2.12 8.04 -52.49 -0.42 1.70 16 31 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 32 H 0.14 1.43 8.06 -52.48 -0.42 1.01 16 33 H 0.11 2.05 7.09 -52.49 -0.37 1.68 16 LS Contribution 310.41 15.07 4.68 4.68 Total: -1.00 -24.51 310.41 -6.72 -31.23 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -1.82 Total: 3.80 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: -5.34 Total: -18.34 kcal Atomic # 7 Polarization: -17.62 SS G_CDS: 0.61 Total: -17.01 kcal Atomic # 9 Polarization: -16.55 SS G_CDS: 0.18 Total: -16.36 kcal Atomic # 14 Polarization: 17.03 SS G_CDS: -5.03 Total: 12.00 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -24.51 -6.72 -31.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239711725.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -178.709 kcal (2) G-P(sol) polarization free energy of solvation -24.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds