Wall clock time and date at job start Tue Mar 31 2020 15:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30805 * 1 3 3 Si 1.86803 * 119.99410 * 2 1 4 4 H 1.48495 * 109.47345 * 85.19793 * 3 2 1 5 5 H 1.48504 * 109.47171 * 205.19531 * 3 2 1 6 6 H 1.48497 * 109.47359 * 325.19221 * 3 2 1 7 7 C 1.39991 * 120.00641 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00277 * 196.70865 * 7 2 1 9 9 C 1.41010 * 120.00105 * 16.70908 * 7 2 1 10 10 C 1.40960 * 120.11657 * 26.11439 * 9 7 2 11 11 C 1.36210 * 119.88372 * 179.97438 * 10 9 7 12 12 C 1.39986 * 120.11861 * 0.02562 * 11 10 9 13 13 C 1.47937 * 119.88655 * 179.97438 * 12 11 10 14 14 C 1.39607 * 120.14666 * 129.72232 * 13 12 11 15 15 C 1.38092 * 119.85077 * 179.72322 * 14 13 12 16 16 F 1.35104 * 119.92173 * 180.30083 * 15 14 13 17 17 C 1.38656 * 120.15584 * 0.58010 * 15 14 13 18 18 C 1.38275 * 120.29645 * 359.67598 * 17 15 14 19 19 C 1.38223 * 120.14414 * 0.04551 * 18 17 15 20 20 F 1.35099 * 120.07376 * 179.97438 * 19 18 17 21 21 C 1.39946 * 120.23362 * 359.95883 * 12 11 10 22 22 C 1.36257 * 120.11490 * 359.78036 * 21 12 11 23 23 C 1.50708 * 120.05746 * 180.23658 * 22 21 12 24 24 F 1.39898 * 109.46851 * 0.25873 * 23 22 21 25 25 F 1.39897 * 109.46906 * 120.25998 * 23 22 21 26 26 F 1.39899 * 109.46795 * 240.25829 * 23 22 21 27 27 H 0.96996 * 120.00281 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.05538 * 359.95648 * 10 9 7 29 29 H 1.08006 * 119.94551 * 180.02562 * 11 10 9 30 30 H 1.08002 * 120.06788 * 0.02562 * 14 13 12 31 31 H 1.07998 * 119.84995 * 179.69945 * 17 15 14 32 32 H 1.08005 * 119.92979 * 180.02562 * 18 17 15 33 33 H 1.07998 * 119.94384 * 180.02562 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2419 1.6179 0.0000 4 1 2.3879 2.1052 1.3951 5 1 3.5866 1.4133 -0.5960 6 1 1.4938 2.6213 -0.7992 7 6 2.0081 -1.2123 -0.0005 8 1 3.0540 -1.2321 0.2684 9 6 1.3479 -2.4076 -0.3522 10 6 0.2221 -2.3708 -1.1997 11 6 -0.4117 -3.5284 -1.5367 12 6 0.0527 -4.7531 -1.0426 13 6 -0.6400 -6.0072 -1.4115 14 6 0.0886 -7.0925 -1.9015 15 6 -0.5635 -8.2622 -2.2386 16 9 0.1409 -9.3155 -2.7072 17 6 -1.9402 -8.3562 -2.1028 18 6 -2.6687 -7.2832 -1.6231 19 6 -2.0279 -6.1086 -1.2766 20 9 -2.7411 -5.0610 -0.8085 21 6 1.1701 -4.7954 -0.2011 22 6 1.8146 -3.6437 0.1379 23 6 3.0209 -3.6913 1.0399 24 9 3.2879 -5.0187 1.3919 25 9 4.1257 -3.1553 0.3696 26 9 2.7689 -2.9440 2.1954 27 1 -0.4850 0.8400 -0.0004 28 1 -0.1373 -1.4264 -1.5809 29 1 -1.2741 -3.5014 -2.1864 30 1 1.1604 -7.0191 -2.0121 31 1 -2.4457 -9.2717 -2.3724 32 1 -3.7407 -7.3631 -1.5192 33 1 1.5246 -5.7428 0.1771 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239711725.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:32 Heat of formation + Delta-G solvation = -218.206374 kcal Electronic energy + Delta-G solvation = -27323.199033 eV Core-core repulsion = 22533.573405 eV Total energy + Delta-G solvation = -4789.625628 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.90135 -49.89469 -49.79464 -48.45431 -48.30465 -40.28406 -39.04991 -35.93899 -33.57709 -32.32650 -31.18872 -30.43780 -27.71671 -26.30084 -24.39125 -23.59905 -22.65885 -21.96186 -19.66973 -19.20922 -19.18948 -18.96740 -18.37719 -17.95938 -17.65931 -17.19268 -16.75496 -16.29265 -16.02226 -15.61153 -15.54224 -15.29409 -15.28121 -15.11449 -14.86025 -14.78915 -14.64694 -14.55587 -14.36619 -14.10578 -13.79897 -13.55871 -13.50656 -13.07699 -12.88895 -12.83843 -12.70564 -12.37917 -11.99982 -11.73753 -11.50432 -11.22463 -10.26968 -9.81325 -9.65474 -9.16272 -8.87378 -6.59248 -0.11410 0.05694 0.65101 0.89182 1.36181 1.44590 1.51968 2.03953 2.12974 2.36839 2.58897 3.17766 3.23201 3.29947 3.34981 3.44970 3.69793 3.84463 3.90316 4.08517 4.21005 4.27461 4.45288 4.81237 4.90737 4.96878 5.02062 5.07288 5.08965 5.15258 5.21547 5.41683 5.60546 5.78839 5.86280 5.94217 6.04123 6.39203 6.62031 6.69192 8.07594 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.015090 B = 0.004268 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.126321 B = 6559.509056 C = 7808.604058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.042 3.958 3 Si 0.980 3.020 4 H -0.261 1.261 5 H -0.257 1.257 6 H -0.257 1.257 7 C -0.465 4.465 8 H 0.086 0.914 9 C 0.128 3.872 10 C -0.178 4.178 11 C -0.053 4.053 12 C -0.205 4.205 13 C -0.018 4.018 14 C -0.137 4.137 15 C 0.088 3.912 16 F -0.140 7.140 17 C -0.127 4.127 18 C -0.110 4.110 19 C 0.063 3.937 20 F -0.145 7.145 21 C -0.015 4.015 22 C -0.326 4.326 23 C 0.525 3.475 24 F -0.188 7.188 25 F -0.190 7.190 26 F -0.190 7.190 27 H 0.299 0.701 28 H 0.116 0.884 29 H 0.110 0.890 30 H 0.141 0.859 31 H 0.177 0.823 32 H 0.174 0.826 33 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.364 -8.981 -3.301 10.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.178 4.178 3 Si 0.800 3.200 4 H -0.186 1.186 5 H -0.181 1.181 6 H -0.181 1.181 7 C -0.492 4.492 8 H 0.104 0.896 9 C 0.124 3.876 10 C -0.197 4.197 11 C -0.072 4.072 12 C -0.206 4.206 13 C -0.019 4.019 14 C -0.156 4.156 15 C 0.069 3.931 16 F -0.119 7.119 17 C -0.146 4.146 18 C -0.128 4.128 19 C 0.044 3.956 20 F -0.124 7.124 21 C -0.033 4.033 22 C -0.328 4.328 23 C 0.472 3.528 24 F -0.170 7.170 25 F -0.171 7.171 26 F -0.171 7.171 27 H 0.111 0.889 28 H 0.134 0.866 29 H 0.128 0.872 30 H 0.159 0.841 31 H 0.195 0.805 32 H 0.191 0.809 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.551 -8.823 -3.258 10.054 hybrid contribution 0.648 0.981 0.376 1.235 sum -2.903 -7.842 -2.882 8.845 Atomic orbital electron populations 1.69810 1.09032 1.31866 1.30743 1.26833 0.95525 1.04731 0.90731 0.85200 0.79461 0.75582 0.79806 1.18568 1.18055 1.18053 1.20105 0.98415 0.92175 1.38474 0.89644 1.17555 0.91074 0.91225 0.87717 1.20930 0.99500 0.97543 1.01685 1.20707 0.97332 0.91849 0.97292 1.17959 1.01312 0.91577 1.09760 1.18646 0.91378 0.93734 0.98178 1.21186 1.01368 0.91544 1.01511 1.17662 0.90639 0.84177 1.00659 1.91496 1.79038 1.55086 1.86241 1.21254 0.91043 1.00982 1.01305 1.21173 1.02395 0.90066 0.99161 1.18190 0.89082 0.86085 1.02237 1.91480 1.77778 1.56710 1.86385 1.20306 0.92734 0.96177 0.94051 1.19467 1.03584 0.96928 1.12848 1.18143 0.83581 0.72110 0.78988 1.93055 1.94856 1.36208 1.92870 1.93097 1.57076 1.86401 1.80569 1.93126 1.94308 1.77350 1.52332 0.88941 0.86608 0.87240 0.84093 0.80533 0.80877 0.85850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -37.86 10.98 21.83 0.24 -37.62 16 2 C 0.04 1.95 5.14 85.27 0.44 2.39 16 3 Si 0.98 35.48 29.59 68.60 2.03 37.51 16 4 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 5 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 6 H -0.26 -8.63 7.11 99.48 0.71 -7.92 16 7 C -0.47 -23.46 7.79 23.37 0.18 -23.28 16 8 H 0.09 4.28 6.03 -2.91 -0.02 4.27 16 9 C 0.13 6.49 5.54 -21.28 -0.12 6.37 16 10 C -0.18 -8.70 8.62 22.46 0.19 -8.50 16 11 C -0.05 -2.35 8.79 22.22 0.20 -2.15 16 12 C -0.20 -8.48 5.34 -19.87 -0.11 -8.58 16 13 C -0.02 -0.63 5.47 -20.00 -0.11 -0.74 16 14 C -0.14 -4.05 9.49 22.57 0.21 -3.83 16 15 C 0.09 2.18 7.29 22.34 0.16 2.34 16 16 F -0.14 -3.45 17.26 44.97 0.78 -2.67 16 17 C -0.13 -2.51 10.02 22.38 0.22 -2.29 16 18 C -0.11 -2.40 10.01 22.27 0.22 -2.17 16 19 C 0.06 1.96 7.16 22.65 0.16 2.12 16 20 F -0.14 -5.12 15.88 44.97 0.71 -4.40 16 21 C -0.01 -0.62 8.83 22.22 0.20 -0.43 16 22 C -0.33 -15.36 5.38 -19.67 -0.11 -15.47 16 23 C 0.53 23.26 2.82 71.24 0.20 23.46 16 24 F -0.19 -7.50 15.95 44.97 0.72 -6.78 16 25 F -0.19 -8.36 15.67 44.97 0.70 -7.66 16 26 F -0.19 -8.75 16.49 44.97 0.74 -8.00 16 27 H 0.30 12.72 8.30 -92.71 -0.77 11.95 16 28 H 0.12 5.81 6.22 -2.91 -0.02 5.79 16 29 H 0.11 4.43 7.77 -2.91 -0.02 4.41 16 30 H 0.14 4.08 8.04 -2.91 -0.02 4.05 16 31 H 0.18 2.16 8.06 -2.91 -0.02 2.14 16 32 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 33 H 0.12 4.72 7.09 -2.91 -0.02 4.70 16 Total: -1.00 -54.58 310.41 9.08 -45.50 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 1.20 Total: 14.87 kcal Atomic # 6 Polarization: -32.69 SS G_CDS: 1.95 Total: -30.74 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.24 Total: -37.62 kcal Atomic # 9 Polarization: -33.17 SS G_CDS: 3.65 Total: -29.52 kcal Atomic # 14 Polarization: 35.48 SS G_CDS: 2.03 Total: 37.51 kcal Total: -54.58 9.08 -45.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239711725.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.710 kcal (2) G-P(sol) polarization free energy of solvation -54.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds