Wall clock time and date at job start Tue Mar 31 2020 15:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30786 * 1 3 3 Si 1.86793 * 119.99780 * 2 1 4 4 H 1.48508 * 109.46809 * 239.99746 * 3 2 1 5 5 H 1.48493 * 109.47352 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47036 * 120.00434 * 3 2 1 7 7 C 1.40058 * 119.99601 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99825 * 195.25960 * 7 2 1 9 9 C 1.40861 * 120.00685 * 15.26344 * 7 2 1 10 10 C 1.40759 * 120.33054 * 25.49767 * 9 7 2 11 11 C 1.36427 * 119.98914 * 180.30334 * 10 9 7 12 12 C 1.50699 * 119.65204 * 179.69609 * 11 10 9 13 13 F 1.39909 * 109.46757 * 179.97438 * 12 11 10 14 14 F 1.39898 * 109.47462 * 299.97389 * 12 11 10 15 15 F 1.39902 * 109.46995 * 59.98242 * 12 11 10 16 16 C 1.38938 * 120.68871 * 359.67526 * 11 10 9 17 17 C 1.38056 * 120.68506 * 0.02562 * 16 11 10 18 18 C 1.39205 * 119.97700 * 359.97438 * 17 16 11 19 19 C 1.47818 * 120.33768 * 180.02562 * 18 17 16 20 20 C 1.39644 * 120.15316 * 65.00071 * 19 18 17 21 21 C 1.38092 * 119.85163 * 179.97438 * 20 19 18 22 22 F 1.35103 * 119.92179 * 180.02562 * 21 20 19 23 23 C 1.38666 * 120.15521 * 0.02562 * 21 20 19 24 24 C 1.38285 * 120.31023 * 359.97438 * 23 21 20 25 25 C 1.38210 * 120.14733 * 0.27642 * 24 23 21 26 26 F 1.35101 * 120.08287 * 179.72804 * 25 24 23 27 27 H 0.96996 * 120.00206 * 0.02562 * 1 2 3 28 28 H 1.08003 * 120.00660 * 0.02562 * 10 9 7 29 29 H 1.08006 * 119.65844 * 179.97438 * 16 11 10 30 30 H 1.08004 * 120.01511 * 179.97438 * 17 16 11 31 31 H 1.08001 * 120.07818 * 0.02783 * 20 19 18 32 32 H 1.07993 * 119.84228 * 179.97438 * 23 21 20 33 33 H 1.07993 * 119.92681 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2418 1.6177 0.0000 4 1 3.0956 1.6963 -1.2126 5 1 1.2768 2.7464 -0.0006 6 1 3.0956 1.6963 1.2125 7 6 2.0081 -1.2130 0.0005 8 1 3.0595 -1.2294 0.2467 9 6 1.3411 -2.4116 -0.3200 10 6 0.1908 -2.3899 -1.1310 11 6 -0.4533 -3.5543 -1.4321 12 6 -1.6881 -3.5215 -2.2953 13 9 -2.1712 -4.8232 -2.4677 14 9 -2.6687 -2.7383 -1.6772 15 9 -1.3707 -2.9730 -3.5426 16 6 0.0175 -4.7698 -0.9515 17 6 1.1466 -4.8244 -0.1589 18 6 1.8258 -3.6534 0.1657 19 6 3.0358 -3.7026 1.0133 20 6 4.1875 -4.3459 0.5551 21 6 5.3146 -4.3877 1.3518 22 9 6.4297 -5.0093 0.9097 23 6 5.3046 -3.7932 2.6045 24 6 4.1677 -3.1544 3.0648 25 6 3.0309 -3.1095 2.2800 26 9 1.9192 -2.4898 2.7332 27 1 -0.4850 0.8400 -0.0004 28 1 -0.1844 -1.4512 -1.5112 29 1 -0.5056 -5.6815 -1.1998 30 1 1.5029 -5.7752 0.2092 31 1 4.1970 -4.8090 -0.4206 32 1 6.1887 -3.8292 3.2236 33 1 4.1669 -2.6931 4.0412 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239712819.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:21 Heat of formation + Delta-G solvation = -207.057307 kcal Electronic energy + Delta-G solvation = -27522.239222 eV Core-core repulsion = 22733.097055 eV Total energy + Delta-G solvation = -4789.142168 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.43754 -48.63740 -48.10307 -46.98048 -46.88054 -38.77329 -37.43629 -34.08576 -32.46126 -30.16480 -29.78722 -28.96582 -25.74081 -25.11570 -22.79446 -22.05505 -21.38395 -20.14839 -18.16314 -17.75890 -17.57856 -17.26436 -16.83287 -16.54006 -16.52400 -15.44611 -15.20504 -14.76393 -14.72364 -14.06001 -13.91280 -13.82406 -13.63957 -13.55413 -13.45370 -13.37961 -13.14331 -13.09622 -12.88961 -12.74111 -12.15560 -12.02605 -11.78624 -11.49702 -11.43160 -11.28004 -11.09012 -10.80145 -10.63271 -10.10499 -9.92019 -9.49146 -8.79414 -8.18417 -7.81211 -7.75229 -7.07205 -4.69407 1.33492 1.41302 2.21481 2.59729 2.93145 2.94885 3.01550 3.48428 3.71931 3.78860 4.20505 4.49621 4.64478 4.72116 4.87764 4.94691 5.07534 5.16981 5.36955 5.44098 5.57571 5.94986 6.12498 6.19354 6.31255 6.36583 6.49580 6.59873 6.70399 6.76692 6.94159 7.04315 7.18844 7.41181 7.53394 7.59815 7.80908 8.15181 8.47661 8.51789 9.84924 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.010915 B = 0.005416 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.722342 B = 5168.439771 C = 6830.903154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.076 3.924 3 Si 0.911 3.089 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.434 4.434 8 H 0.084 0.916 9 C 0.132 3.868 10 C -0.103 4.103 11 C -0.151 4.151 12 C 0.504 3.496 13 F -0.190 7.190 14 F -0.182 7.182 15 F -0.188 7.188 16 C -0.216 4.216 17 C -0.057 4.057 18 C -0.185 4.185 19 C 0.013 3.987 20 C -0.129 4.129 21 C 0.078 3.922 22 F -0.145 7.145 23 C -0.145 4.145 24 C -0.136 4.136 25 C 0.110 3.890 26 F -0.119 7.119 27 H 0.290 0.710 28 H 0.133 0.867 29 H 0.107 0.893 30 H 0.102 0.898 31 H 0.139 0.861 32 H 0.135 0.865 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.203 -3.402 1.909 5.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.461 4.461 8 H 0.102 0.898 9 C 0.129 3.871 10 C -0.122 4.122 11 C -0.153 4.153 12 C 0.450 3.550 13 F -0.171 7.171 14 F -0.164 7.164 15 F -0.170 7.170 16 C -0.235 4.235 17 C -0.075 4.075 18 C -0.187 4.187 19 C 0.012 3.988 20 C -0.148 4.148 21 C 0.059 3.941 22 F -0.124 7.124 23 C -0.164 4.164 24 C -0.155 4.155 25 C 0.090 3.910 26 F -0.097 7.097 27 H 0.101 0.899 28 H 0.150 0.850 29 H 0.125 0.875 30 H 0.120 0.880 31 H 0.157 0.843 32 H 0.152 0.848 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.938 -3.216 1.902 5.428 hybrid contribution 0.045 0.806 -0.101 0.814 sum 3.982 -2.410 1.801 4.991 Atomic orbital electron populations 1.69724 1.07699 1.30431 1.31800 1.26023 0.94844 1.01828 0.91855 0.86277 0.80259 0.79563 0.80438 1.18388 1.19879 1.18546 1.19525 0.97424 0.90541 1.38611 0.89834 1.17322 0.90261 0.91248 0.88269 1.20916 0.97203 0.95889 0.98225 1.19415 0.95531 0.97147 1.03188 1.18774 0.84985 0.72552 0.78718 1.93083 1.89747 1.38531 1.95749 1.93174 1.65371 1.75133 1.82683 1.93145 1.92947 1.85977 1.44884 1.19974 1.00910 0.95154 1.07477 1.20460 0.94538 0.95860 0.96626 1.18384 0.98897 0.94295 1.07148 1.18620 0.93980 0.94522 0.91706 1.21196 0.90931 1.02165 1.00519 1.17544 0.83414 0.98802 0.94353 1.91461 1.50594 1.80681 1.89677 1.20784 0.99278 1.01108 0.95265 1.20839 0.91774 1.02054 1.00847 1.17920 0.83719 0.96340 0.92980 1.91554 1.50157 1.79651 1.88374 0.89910 0.84961 0.87536 0.87972 0.84302 0.84752 0.84480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.42 10.87 55.55 0.60 -17.82 16 2 C 0.08 1.74 5.19 -17.31 -0.09 1.65 16 3 Si 0.91 17.42 29.59 -169.99 -5.03 12.39 16 4 H -0.26 -4.93 7.11 56.52 0.40 -4.52 16 5 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 6 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 7 C -0.43 -10.33 7.51 -37.91 -0.28 -10.61 16 8 H 0.08 1.95 7.08 -52.49 -0.37 1.58 16 9 C 0.13 3.17 5.47 -106.56 -0.58 2.59 16 10 C -0.10 -2.47 8.12 -39.28 -0.32 -2.79 16 11 C -0.15 -3.34 5.34 -105.02 -0.56 -3.90 16 12 C 0.50 10.25 3.30 36.01 0.12 10.37 16 13 F -0.19 -3.58 15.93 2.25 0.04 -3.55 16 14 F -0.18 -3.80 17.22 2.25 0.04 -3.77 16 15 F -0.19 -3.76 17.22 2.25 0.04 -3.72 16 16 C -0.22 -4.47 9.41 -39.39 -0.37 -4.85 16 17 C -0.06 -1.15 9.73 -39.29 -0.38 -1.53 16 18 C -0.19 -4.04 5.06 -104.23 -0.53 -4.57 16 19 C 0.01 0.25 4.39 -104.84 -0.46 -0.21 16 20 C -0.13 -2.18 9.72 -39.11 -0.38 -2.56 16 21 C 0.08 1.20 7.29 -39.48 -0.29 0.92 16 22 F -0.15 -2.18 17.26 2.25 0.04 -2.14 16 23 C -0.15 -2.02 10.02 -39.41 -0.39 -2.42 16 24 C -0.14 -2.05 10.01 -39.57 -0.40 -2.45 16 25 C 0.11 2.07 6.50 -38.98 -0.25 1.81 16 26 F -0.12 -2.54 16.15 2.25 0.04 -2.50 16 27 H 0.29 6.31 8.29 -40.82 -0.34 5.97 16 28 H 0.13 3.30 6.13 -52.48 -0.32 2.98 16 29 H 0.11 2.00 7.12 -52.48 -0.37 1.63 16 30 H 0.10 1.80 8.06 -52.48 -0.42 1.38 16 31 H 0.14 2.20 8.06 -52.49 -0.42 1.78 16 32 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 33 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 313.46 15.07 4.72 4.72 Total: -1.00 -24.55 313.46 -6.58 -31.12 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -1.89 Total: 3.83 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: -5.17 Total: -18.56 kcal Atomic # 7 Polarization: -18.42 SS G_CDS: 0.60 Total: -17.82 kcal Atomic # 9 Polarization: -15.87 SS G_CDS: 0.19 Total: -15.68 kcal Atomic # 14 Polarization: 17.42 SS G_CDS: -5.03 Total: 12.39 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -24.55 -6.58 -31.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239712819.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.936 kcal (2) G-P(sol) polarization free energy of solvation -24.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds