Wall clock time and date at job start Tue Mar 31 2020 15:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30786 * 1 3 3 Si 1.86793 * 119.99780 * 2 1 4 4 H 1.48508 * 109.46809 * 239.99746 * 3 2 1 5 5 H 1.48493 * 109.47352 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47036 * 120.00434 * 3 2 1 7 7 C 1.40058 * 119.99601 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99825 * 195.25960 * 7 2 1 9 9 C 1.40861 * 120.00685 * 15.26344 * 7 2 1 10 10 C 1.40759 * 120.33054 * 25.49767 * 9 7 2 11 11 C 1.36427 * 119.98914 * 180.30334 * 10 9 7 12 12 C 1.50699 * 119.65204 * 179.69609 * 11 10 9 13 13 F 1.39909 * 109.46757 * 179.97438 * 12 11 10 14 14 F 1.39898 * 109.47462 * 299.97389 * 12 11 10 15 15 F 1.39902 * 109.46995 * 59.98242 * 12 11 10 16 16 C 1.38938 * 120.68871 * 359.67526 * 11 10 9 17 17 C 1.38056 * 120.68506 * 0.02562 * 16 11 10 18 18 C 1.39205 * 119.97700 * 359.97438 * 17 16 11 19 19 C 1.47818 * 120.33768 * 180.02562 * 18 17 16 20 20 C 1.39644 * 120.15316 * 65.00071 * 19 18 17 21 21 C 1.38092 * 119.85163 * 179.97438 * 20 19 18 22 22 F 1.35103 * 119.92179 * 180.02562 * 21 20 19 23 23 C 1.38666 * 120.15521 * 0.02562 * 21 20 19 24 24 C 1.38285 * 120.31023 * 359.97438 * 23 21 20 25 25 C 1.38210 * 120.14733 * 0.27642 * 24 23 21 26 26 F 1.35101 * 120.08287 * 179.72804 * 25 24 23 27 27 H 0.96996 * 120.00206 * 0.02562 * 1 2 3 28 28 H 1.08003 * 120.00660 * 0.02562 * 10 9 7 29 29 H 1.08006 * 119.65844 * 179.97438 * 16 11 10 30 30 H 1.08004 * 120.01511 * 179.97438 * 17 16 11 31 31 H 1.08001 * 120.07818 * 0.02783 * 20 19 18 32 32 H 1.07993 * 119.84228 * 179.97438 * 23 21 20 33 33 H 1.07993 * 119.92681 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2418 1.6177 0.0000 4 1 3.0956 1.6963 -1.2126 5 1 1.2768 2.7464 -0.0006 6 1 3.0956 1.6963 1.2125 7 6 2.0081 -1.2130 0.0005 8 1 3.0595 -1.2294 0.2467 9 6 1.3411 -2.4116 -0.3200 10 6 0.1908 -2.3899 -1.1310 11 6 -0.4533 -3.5543 -1.4321 12 6 -1.6881 -3.5215 -2.2953 13 9 -2.1712 -4.8232 -2.4677 14 9 -2.6687 -2.7383 -1.6772 15 9 -1.3707 -2.9730 -3.5426 16 6 0.0175 -4.7698 -0.9515 17 6 1.1466 -4.8244 -0.1589 18 6 1.8258 -3.6534 0.1657 19 6 3.0358 -3.7026 1.0133 20 6 4.1875 -4.3459 0.5551 21 6 5.3146 -4.3877 1.3518 22 9 6.4297 -5.0093 0.9097 23 6 5.3046 -3.7932 2.6045 24 6 4.1677 -3.1544 3.0648 25 6 3.0309 -3.1095 2.2800 26 9 1.9192 -2.4898 2.7332 27 1 -0.4850 0.8400 -0.0004 28 1 -0.1844 -1.4512 -1.5112 29 1 -0.5056 -5.6815 -1.1998 30 1 1.5029 -5.7752 0.2092 31 1 4.1970 -4.8090 -0.4206 32 1 6.1887 -3.8292 3.2236 33 1 4.1669 -2.6931 4.0412 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239712819.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:20 Heat of formation + Delta-G solvation = -215.314229 kcal Electronic energy + Delta-G solvation = -27522.597269 eV Core-core repulsion = 22733.097055 eV Total energy + Delta-G solvation = -4789.500215 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.07733 -49.84804 -49.61101 -48.58834 -48.54448 -40.27424 -38.91248 -35.78338 -33.96345 -31.76383 -31.25208 -30.37864 -27.47317 -26.68220 -24.17992 -23.45853 -23.03891 -21.70754 -19.84394 -19.40802 -19.21508 -18.60172 -18.24598 -18.18935 -17.86519 -16.88084 -16.66417 -16.25026 -16.17164 -15.63926 -15.46789 -15.23378 -15.17881 -15.14600 -15.01028 -14.90146 -14.78216 -14.73604 -14.39493 -14.12209 -13.71525 -13.47504 -13.35160 -13.12234 -12.93747 -12.74499 -12.68487 -12.33071 -12.08276 -11.72887 -11.51285 -11.17395 -10.14653 -9.65919 -9.52106 -9.25662 -8.75181 -6.45551 -0.01447 0.13101 0.57886 0.90642 1.35582 1.45384 1.48066 1.82090 2.14009 2.44892 2.56763 2.96343 3.22219 3.24842 3.32368 3.44397 3.67183 3.78247 3.95379 4.12989 4.29614 4.39737 4.56830 4.86807 4.94481 4.99888 5.07438 5.10062 5.19023 5.22533 5.32691 5.34856 5.67586 5.77821 5.87955 5.97787 6.11754 6.40648 6.75856 6.78663 8.19006 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.010915 B = 0.005416 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.722342 B = 5168.439771 C = 6830.903154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.039 3.961 3 Si 0.972 3.028 4 H -0.258 1.258 5 H -0.267 1.267 6 H -0.257 1.257 7 C -0.456 4.456 8 H 0.079 0.921 9 C 0.105 3.895 10 C -0.131 4.131 11 C -0.161 4.161 12 C 0.510 3.490 13 F -0.178 7.178 14 F -0.187 7.187 15 F -0.186 7.186 16 C -0.212 4.212 17 C -0.063 4.063 18 C -0.182 4.182 19 C -0.015 4.015 20 C -0.131 4.131 21 C 0.081 3.919 22 F -0.140 7.140 23 C -0.124 4.124 24 C -0.124 4.124 25 C 0.082 3.918 26 F -0.143 7.143 27 H 0.293 0.707 28 H 0.113 0.887 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.144 0.856 32 H 0.176 0.824 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.236 -4.289 2.952 8.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.178 4.178 3 Si 0.792 3.208 4 H -0.182 1.182 5 H -0.191 1.191 6 H -0.181 1.181 7 C -0.484 4.484 8 H 0.097 0.903 9 C 0.102 3.898 10 C -0.151 4.151 11 C -0.163 4.163 12 C 0.456 3.544 13 F -0.159 7.159 14 F -0.168 7.168 15 F -0.168 7.168 16 C -0.232 4.232 17 C -0.081 4.081 18 C -0.183 4.183 19 C -0.016 4.016 20 C -0.149 4.149 21 C 0.062 3.938 22 F -0.119 7.119 23 C -0.143 4.143 24 C -0.142 4.142 25 C 0.062 3.938 26 F -0.122 7.122 27 H 0.104 0.896 28 H 0.131 0.869 29 H 0.147 0.853 30 H 0.150 0.850 31 H 0.162 0.838 32 H 0.193 0.807 33 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 5.972 -4.123 2.940 7.830 hybrid contribution -0.500 0.886 -0.391 1.089 sum 5.472 -3.237 2.550 6.850 Atomic orbital electron populations 1.69789 1.08956 1.31227 1.33347 1.26754 0.95418 1.04535 0.91129 0.85380 0.79080 0.75960 0.80372 1.18168 1.19134 1.18123 1.19590 0.97284 0.91324 1.40211 0.90266 1.17662 0.90801 0.92524 0.88812 1.20810 0.98506 0.95862 0.99901 1.19623 0.96007 0.97201 1.03461 1.18528 0.84405 0.72923 0.78513 1.93100 1.89537 1.37598 1.95671 1.93163 1.65433 1.75388 1.82842 1.93144 1.92944 1.86040 1.44660 1.20331 1.00858 0.95408 1.06573 1.20841 0.94180 0.96802 0.96231 1.18763 0.99502 0.93935 1.06127 1.18578 0.94035 0.96829 0.92135 1.21192 0.90858 1.01839 1.01052 1.17593 0.82952 0.98563 0.94699 1.91483 1.50117 1.80551 1.89720 1.21206 0.99954 0.98477 0.94621 1.21152 0.90471 1.01164 1.01446 1.18296 0.84355 0.97337 0.93765 1.91491 1.51661 1.80380 1.88645 0.89603 0.86869 0.85250 0.85008 0.83843 0.80664 0.81493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.24 10.87 21.85 0.24 -40.01 16 2 C 0.04 1.86 5.19 85.29 0.44 2.30 16 3 Si 0.97 36.26 29.59 68.60 2.03 38.29 16 4 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 5 H -0.27 -9.53 7.11 99.48 0.71 -8.82 16 6 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 7 C -0.46 -22.51 7.51 23.35 0.18 -22.33 16 8 H 0.08 3.82 7.08 -2.91 -0.02 3.80 16 9 C 0.10 5.21 5.47 -21.12 -0.12 5.09 16 10 C -0.13 -6.56 8.12 22.46 0.18 -6.37 16 11 C -0.16 -7.24 5.34 -20.12 -0.11 -7.35 16 12 C 0.51 20.84 3.30 71.24 0.24 21.08 16 13 F -0.18 -6.52 15.93 44.97 0.72 -5.81 16 14 F -0.19 -7.92 17.22 44.97 0.77 -7.15 16 15 F -0.19 -7.52 17.22 44.97 0.77 -6.74 16 16 C -0.21 -8.67 9.41 22.39 0.21 -8.46 16 17 C -0.06 -2.50 9.73 22.46 0.22 -2.28 16 18 C -0.18 -7.99 5.06 -19.61 -0.10 -8.09 16 19 C -0.01 -0.56 4.39 -20.01 -0.09 -0.65 16 20 C -0.13 -4.21 9.72 22.57 0.22 -3.99 16 21 C 0.08 2.25 7.29 22.34 0.16 2.41 16 22 F -0.14 -3.73 17.26 44.97 0.78 -2.95 16 23 C -0.12 -2.92 10.02 22.38 0.22 -2.70 16 24 C -0.12 -3.36 10.01 22.27 0.22 -3.14 16 25 C 0.08 3.01 6.50 22.66 0.15 3.16 16 26 F -0.14 -6.20 16.15 44.97 0.73 -5.48 16 27 H 0.29 13.32 8.29 -92.71 -0.77 12.56 16 28 H 0.11 5.99 6.13 -2.91 -0.02 5.97 16 29 H 0.13 4.61 7.12 -2.91 -0.02 4.59 16 30 H 0.13 4.39 8.06 -2.91 -0.02 4.37 16 31 H 0.14 4.37 8.06 -2.91 -0.02 4.35 16 32 H 0.18 2.76 8.06 -2.91 -0.02 2.73 16 33 H 0.17 3.50 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -54.72 313.46 9.27 -45.45 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 1.20 Total: 15.71 kcal Atomic # 6 Polarization: -33.35 SS G_CDS: 2.03 Total: -31.32 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 0.24 Total: -40.01 kcal Atomic # 9 Polarization: -31.90 SS G_CDS: 3.77 Total: -28.13 kcal Atomic # 14 Polarization: 36.26 SS G_CDS: 2.03 Total: 38.29 kcal Total: -54.72 9.27 -45.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239712819.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.861 kcal (2) G-P(sol) polarization free energy of solvation -54.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds