Wall clock time and date at job start Tue Mar 31 2020 15:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30786 * 1 3 3 Si 1.86793 * 119.99780 * 2 1 4 4 H 1.48508 * 109.46809 * 239.99746 * 3 2 1 5 5 H 1.48493 * 109.47352 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47036 * 120.00434 * 3 2 1 7 7 C 1.40058 * 119.99601 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99542 * 195.29066 * 7 2 1 9 9 C 1.40866 * 120.00694 * 15.29380 * 7 2 1 10 10 C 1.40758 * 120.33019 * 25.46413 * 9 7 2 11 11 C 1.36424 * 119.98775 * 180.25497 * 10 9 7 12 12 C 1.38931 * 120.69146 * 359.77212 * 11 10 9 13 13 C 1.50701 * 119.66010 * 179.97438 * 12 11 10 14 14 F 1.39901 * 109.47420 * 269.97436 * 13 12 11 15 15 F 1.39902 * 109.47093 * 29.97630 * 13 12 11 16 16 F 1.39907 * 109.47413 * 149.97771 * 13 12 11 17 17 C 1.38061 * 120.68136 * 359.97195 * 12 11 10 18 18 C 1.39194 * 119.98072 * 0.02562 * 17 12 11 19 19 C 1.47816 * 120.33932 * 180.02562 * 18 17 12 20 20 C 1.39656 * 120.15439 * 64.99790 * 19 18 17 21 21 C 1.38085 * 119.85416 * 179.97438 * 20 19 18 22 22 F 1.35097 * 119.92189 * 180.02562 * 21 20 19 23 23 C 1.38667 * 120.15475 * 359.97438 * 21 20 19 24 24 C 1.38287 * 120.30890 * 0.02562 * 23 21 20 25 25 C 1.38206 * 120.14613 * 0.27611 * 24 23 21 26 26 F 1.35108 * 120.07845 * 179.72896 * 25 24 23 27 27 H 0.96996 * 120.00206 * 0.02562 * 1 2 3 28 28 H 1.08006 * 120.00359 * 0.02562 * 10 9 7 29 29 H 1.08003 * 119.64873 * 179.74232 * 11 10 9 30 30 H 1.08006 * 120.01343 * 180.02562 * 17 12 11 31 31 H 1.08010 * 120.07302 * 0.02562 * 20 19 18 32 32 H 1.07996 * 119.84464 * 180.02562 * 23 21 20 33 33 H 1.07993 * 119.92245 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2418 1.6177 0.0000 4 1 3.0956 1.6963 -1.2126 5 1 1.2768 2.7464 -0.0006 6 1 3.0956 1.6963 1.2125 7 6 2.0081 -1.2130 0.0005 8 1 3.0594 -1.2294 0.2472 9 6 1.3412 -2.4115 -0.3207 10 6 0.1909 -2.3896 -1.1316 11 6 -0.4525 -3.5539 -1.4340 12 6 0.0180 -4.7696 -0.9533 13 6 -0.7112 -6.0417 -1.3014 14 9 -1.6866 -6.3003 -0.3323 15 9 -1.3221 -5.9017 -2.5522 16 9 0.1981 -7.1041 -1.3427 17 6 1.1466 -4.8243 -0.1601 18 6 1.8250 -3.6534 0.1660 19 6 3.0346 -3.7028 1.0142 20 6 4.1869 -4.3453 0.5562 21 6 5.3135 -4.3873 1.3536 22 9 6.4290 -5.0080 0.9117 23 6 5.3027 -3.7929 2.6063 24 6 4.1653 -3.1549 3.0664 25 6 3.0287 -3.1107 2.2814 26 9 1.9165 -2.4918 2.7344 27 1 -0.4850 0.8400 -0.0004 28 1 -0.1844 -1.4507 -1.5112 29 1 -1.3370 -3.5303 -2.0533 30 1 1.5031 -5.7752 0.2075 31 1 4.1971 -4.8076 -0.4199 32 1 6.1868 -3.8283 3.2256 33 1 4.1638 -2.6944 4.0432 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239713008.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:11 Heat of formation + Delta-G solvation = -210.314358 kcal Electronic energy + Delta-G solvation = -27510.667967 eV Core-core repulsion = 22721.384563 eV Total energy + Delta-G solvation = -4789.283404 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.39724 -48.63015 -48.10982 -46.94587 -46.86085 -38.76582 -37.39841 -34.22672 -32.26112 -30.51199 -29.72907 -28.38045 -26.91834 -24.00002 -23.16807 -22.18736 -21.09530 -20.26735 -17.86390 -17.73518 -17.62294 -17.51767 -16.92134 -16.54844 -16.36372 -15.61962 -15.37970 -14.73450 -14.35957 -14.10005 -13.97639 -13.85589 -13.77041 -13.45741 -13.41143 -13.38028 -13.13967 -13.09074 -12.87383 -12.59233 -12.34243 -12.15217 -11.80979 -11.49810 -11.45113 -11.25432 -11.09618 -10.82270 -10.63417 -10.14693 -9.83459 -9.55278 -8.78746 -8.14495 -7.89606 -7.68411 -7.15930 -4.82124 1.35905 1.41643 2.28707 2.62343 2.87396 2.88892 2.93545 3.55155 3.64703 3.80122 4.16414 4.49945 4.70702 4.82488 4.91557 4.97246 5.10679 5.17802 5.39985 5.45975 5.57764 5.90519 6.02070 6.19888 6.31809 6.40505 6.49581 6.60260 6.67155 6.75854 6.91696 7.16045 7.19198 7.31241 7.55939 7.62058 7.81861 8.18105 8.42054 8.49357 9.73656 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.008806 B = 0.006241 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3178.893246 B = 4485.592182 C = 6770.079147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.076 3.924 3 Si 0.913 3.087 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.260 1.260 7 C -0.423 4.423 8 H 0.084 0.916 9 C 0.149 3.851 10 C -0.160 4.160 11 C -0.053 4.053 12 C -0.319 4.319 13 C 0.516 3.484 14 F -0.194 7.194 15 F -0.192 7.192 16 F -0.194 7.194 17 C -0.007 4.007 18 C -0.203 4.203 19 C 0.014 3.986 20 C -0.129 4.129 21 C 0.079 3.921 22 F -0.145 7.145 23 C -0.145 4.145 24 C -0.136 4.136 25 C 0.109 3.891 26 F -0.120 7.120 27 H 0.290 0.710 28 H 0.130 0.870 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.139 0.861 32 H 0.135 0.865 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.487 -2.791 2.048 5.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.147 4.147 3 Si 0.736 3.264 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.184 1.184 7 C -0.450 4.450 8 H 0.103 0.897 9 C 0.146 3.854 10 C -0.179 4.179 11 C -0.072 4.072 12 C -0.321 4.321 13 C 0.462 3.538 14 F -0.176 7.176 15 F -0.174 7.174 16 F -0.175 7.175 17 C -0.026 4.026 18 C -0.204 4.204 19 C 0.013 3.987 20 C -0.148 4.148 21 C 0.060 3.940 22 F -0.124 7.124 23 C -0.164 4.164 24 C -0.155 4.155 25 C 0.089 3.911 26 F -0.098 7.098 27 H 0.102 0.898 28 H 0.147 0.853 29 H 0.118 0.882 30 H 0.121 0.879 31 H 0.157 0.843 32 H 0.153 0.847 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.235 -2.649 2.058 5.403 hybrid contribution 0.131 0.512 0.010 0.529 sum 4.366 -2.136 2.068 5.282 Atomic orbital electron populations 1.69756 1.07819 1.30533 1.30383 1.26081 0.94873 1.01976 0.91752 0.86249 0.80302 0.79291 0.80585 1.18273 1.19774 1.18425 1.19692 0.97518 0.90743 1.37017 0.89750 1.17577 0.90224 0.90798 0.86814 1.21020 0.98650 0.96889 1.01317 1.20149 0.97955 0.91629 0.97498 1.18908 1.04494 0.90862 1.17870 1.18540 0.76707 0.85014 0.73535 1.93147 1.65298 1.95148 1.63989 1.93093 1.84524 1.95994 1.43744 1.93093 1.67524 1.60649 1.96266 1.20216 0.92506 0.96402 0.93451 1.18127 0.99601 0.93833 1.08880 1.18576 0.93873 0.94586 0.91623 1.21228 0.90943 1.02088 1.00567 1.17543 0.83408 0.98752 0.94339 1.91461 1.50528 1.80710 1.89678 1.20789 0.99286 1.01085 0.95257 1.20836 0.91760 1.02066 1.00825 1.17921 0.83694 0.96500 0.92955 1.91552 1.50143 1.79704 1.88395 0.89828 0.85263 0.88154 0.87897 0.84272 0.84728 0.84465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.45 10.87 55.55 0.60 -16.84 16 2 C 0.08 1.69 5.19 -17.31 -0.09 1.60 16 3 Si 0.91 16.80 29.59 -169.99 -5.03 11.77 16 4 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 5 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 6 H -0.26 -4.80 7.11 56.52 0.40 -4.39 16 7 C -0.42 -9.86 7.51 -37.91 -0.28 -10.15 16 8 H 0.08 1.93 7.08 -52.49 -0.37 1.56 16 9 C 0.15 3.54 5.47 -106.56 -0.58 2.95 16 10 C -0.16 -3.73 8.63 -39.28 -0.34 -4.07 16 11 C -0.05 -1.17 9.31 -39.98 -0.37 -1.54 16 12 C -0.32 -6.78 5.47 -104.43 -0.57 -7.35 16 13 C 0.52 10.03 3.36 36.01 0.12 10.15 16 14 F -0.19 -3.79 17.30 2.25 0.04 -3.75 16 15 F -0.19 -3.62 16.43 2.25 0.04 -3.58 16 16 F -0.19 -3.62 16.43 2.25 0.04 -3.58 16 17 C -0.01 -0.15 9.07 -39.29 -0.36 -0.51 16 18 C -0.20 -4.46 5.06 -104.23 -0.53 -4.98 16 19 C 0.01 0.28 4.38 -104.84 -0.46 -0.18 16 20 C -0.13 -2.23 9.72 -39.11 -0.38 -2.61 16 21 C 0.08 1.23 7.29 -39.48 -0.29 0.94 16 22 F -0.15 -2.21 17.26 2.25 0.04 -2.17 16 23 C -0.15 -2.04 10.02 -39.40 -0.39 -2.43 16 24 C -0.14 -2.06 10.01 -39.58 -0.40 -2.45 16 25 C 0.11 2.05 6.50 -38.98 -0.25 1.80 16 26 F -0.12 -2.55 16.16 2.25 0.04 -2.51 16 27 H 0.29 6.01 8.29 -40.82 -0.34 5.67 16 28 H 0.13 3.06 6.13 -52.48 -0.32 2.74 16 29 H 0.10 2.01 7.57 -52.48 -0.40 1.61 16 30 H 0.10 1.99 7.58 -52.48 -0.40 1.59 16 31 H 0.14 2.26 8.06 -52.48 -0.42 1.84 16 32 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.14 1.71 8.06 -52.49 -0.42 1.28 16 LS Contribution 313.16 15.07 4.72 4.72 Total: -1.00 -24.03 313.16 -6.58 -30.62 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -1.89 Total: 4.16 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: -5.17 Total: -18.82 kcal Atomic # 7 Polarization: -17.45 SS G_CDS: 0.60 Total: -16.84 kcal Atomic # 9 Polarization: -15.78 SS G_CDS: 0.19 Total: -15.59 kcal Atomic # 14 Polarization: 16.80 SS G_CDS: -5.03 Total: 11.77 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -24.03 -6.58 -30.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239713008.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.697 kcal (2) G-P(sol) polarization free energy of solvation -24.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds