Wall clock time and date at job start Tue Mar 31 2020 15:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30786 * 1 3 3 Si 1.86793 * 119.99780 * 2 1 4 4 H 1.48508 * 109.46809 * 239.99746 * 3 2 1 5 5 H 1.48493 * 109.47352 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47036 * 120.00434 * 3 2 1 7 7 C 1.40058 * 119.99601 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99542 * 195.29066 * 7 2 1 9 9 C 1.40866 * 120.00694 * 15.29380 * 7 2 1 10 10 C 1.40758 * 120.33019 * 25.46413 * 9 7 2 11 11 C 1.36424 * 119.98775 * 180.25497 * 10 9 7 12 12 C 1.38931 * 120.69146 * 359.77212 * 11 10 9 13 13 C 1.50701 * 119.66010 * 179.97438 * 12 11 10 14 14 F 1.39901 * 109.47420 * 269.97436 * 13 12 11 15 15 F 1.39902 * 109.47093 * 29.97630 * 13 12 11 16 16 F 1.39907 * 109.47413 * 149.97771 * 13 12 11 17 17 C 1.38061 * 120.68136 * 359.97195 * 12 11 10 18 18 C 1.39194 * 119.98072 * 0.02562 * 17 12 11 19 19 C 1.47816 * 120.33932 * 180.02562 * 18 17 12 20 20 C 1.39656 * 120.15439 * 64.99790 * 19 18 17 21 21 C 1.38085 * 119.85416 * 179.97438 * 20 19 18 22 22 F 1.35097 * 119.92189 * 180.02562 * 21 20 19 23 23 C 1.38667 * 120.15475 * 359.97438 * 21 20 19 24 24 C 1.38287 * 120.30890 * 0.02562 * 23 21 20 25 25 C 1.38206 * 120.14613 * 0.27611 * 24 23 21 26 26 F 1.35108 * 120.07845 * 179.72896 * 25 24 23 27 27 H 0.96996 * 120.00206 * 0.02562 * 1 2 3 28 28 H 1.08006 * 120.00359 * 0.02562 * 10 9 7 29 29 H 1.08003 * 119.64873 * 179.74232 * 11 10 9 30 30 H 1.08006 * 120.01343 * 180.02562 * 17 12 11 31 31 H 1.08010 * 120.07302 * 0.02562 * 20 19 18 32 32 H 1.07996 * 119.84464 * 180.02562 * 23 21 20 33 33 H 1.07993 * 119.92245 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2418 1.6177 0.0000 4 1 3.0956 1.6963 -1.2126 5 1 1.2768 2.7464 -0.0006 6 1 3.0956 1.6963 1.2125 7 6 2.0081 -1.2130 0.0005 8 1 3.0594 -1.2294 0.2472 9 6 1.3412 -2.4115 -0.3207 10 6 0.1909 -2.3896 -1.1316 11 6 -0.4525 -3.5539 -1.4340 12 6 0.0180 -4.7696 -0.9533 13 6 -0.7112 -6.0417 -1.3014 14 9 -1.6866 -6.3003 -0.3323 15 9 -1.3221 -5.9017 -2.5522 16 9 0.1981 -7.1041 -1.3427 17 6 1.1466 -4.8243 -0.1601 18 6 1.8250 -3.6534 0.1660 19 6 3.0346 -3.7028 1.0142 20 6 4.1869 -4.3453 0.5562 21 6 5.3135 -4.3873 1.3536 22 9 6.4290 -5.0080 0.9117 23 6 5.3027 -3.7929 2.6063 24 6 4.1653 -3.1549 3.0664 25 6 3.0287 -3.1107 2.2814 26 9 1.9165 -2.4918 2.7344 27 1 -0.4850 0.8400 -0.0004 28 1 -0.1844 -1.4507 -1.5112 29 1 -1.3370 -3.5303 -2.0533 30 1 1.5031 -5.7752 0.2075 31 1 4.1971 -4.8076 -0.4199 32 1 6.1868 -3.8283 3.2256 33 1 4.1638 -2.6944 4.0432 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239713008.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:10 Heat of formation + Delta-G solvation = -217.899146 kcal Electronic energy + Delta-G solvation = -27510.996868 eV Core-core repulsion = 22721.384563 eV Total energy + Delta-G solvation = -4789.612305 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.96478 -49.86036 -49.62017 -48.49353 -48.43419 -40.26660 -38.88444 -35.90771 -33.74068 -32.16112 -31.10182 -29.86956 -28.58372 -25.59740 -24.62357 -23.53182 -22.76238 -21.80982 -19.46889 -19.30322 -19.19084 -19.11127 -18.30321 -17.88801 -17.74530 -17.24163 -16.70094 -16.18453 -15.96148 -15.60727 -15.42108 -15.32862 -15.22900 -15.07242 -14.94027 -14.81165 -14.69081 -14.64665 -14.27474 -14.07628 -13.96996 -13.60529 -13.36960 -13.03724 -12.94834 -12.69325 -12.68686 -12.30282 -12.08174 -11.76582 -11.45121 -11.20138 -10.13157 -9.63328 -9.59550 -9.23501 -8.80862 -6.55879 0.02832 0.12604 0.60067 0.94162 1.35908 1.44433 1.47986 1.95626 2.12179 2.44365 2.53573 3.16358 3.23547 3.33536 3.38248 3.44518 3.73274 3.79928 3.95143 4.13188 4.24138 4.29916 4.46049 4.89412 4.93519 5.01366 5.06117 5.08671 5.17136 5.21446 5.31146 5.46507 5.58995 5.79593 5.87785 5.96529 6.10257 6.44730 6.70359 6.76869 8.11182 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.008806 B = 0.006241 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3178.893246 B = 4485.592182 C = 6770.079147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.041 3.959 3 Si 0.975 3.025 4 H -0.256 1.256 5 H -0.263 1.263 6 H -0.258 1.258 7 C -0.442 4.442 8 H 0.081 0.919 9 C 0.124 3.876 10 C -0.182 4.182 11 C -0.057 4.057 12 C -0.327 4.327 13 C 0.524 3.476 14 F -0.193 7.193 15 F -0.187 7.187 16 F -0.187 7.187 17 C -0.017 4.017 18 C -0.205 4.205 19 C -0.012 4.012 20 C -0.134 4.134 21 C 0.082 3.918 22 F -0.140 7.140 23 C -0.124 4.124 24 C -0.122 4.122 25 C 0.081 3.919 26 F -0.143 7.143 27 H 0.297 0.703 28 H 0.119 0.881 29 H 0.114 0.886 30 H 0.119 0.881 31 H 0.141 0.859 32 H 0.177 0.823 33 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.384 -2.907 3.092 7.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.179 4.179 3 Si 0.795 3.205 4 H -0.180 1.180 5 H -0.187 1.187 6 H -0.182 1.182 7 C -0.469 4.469 8 H 0.099 0.901 9 C 0.121 3.879 10 C -0.201 4.201 11 C -0.075 4.075 12 C -0.329 4.329 13 C 0.471 3.529 14 F -0.175 7.175 15 F -0.169 7.169 16 F -0.168 7.168 17 C -0.035 4.035 18 C -0.207 4.207 19 C -0.013 4.013 20 C -0.153 4.153 21 C 0.062 3.938 22 F -0.119 7.119 23 C -0.143 4.143 24 C -0.141 4.141 25 C 0.062 3.938 26 F -0.121 7.121 27 H 0.109 0.891 28 H 0.136 0.864 29 H 0.132 0.868 30 H 0.137 0.863 31 H 0.159 0.841 32 H 0.194 0.806 33 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 6.129 -2.784 3.096 7.410 hybrid contribution -0.395 0.431 -0.288 0.652 sum 5.734 -2.353 2.808 6.805 Atomic orbital electron populations 1.69794 1.09038 1.31671 1.31080 1.26828 0.95488 1.04642 0.90944 0.85325 0.79131 0.75593 0.80457 1.18039 1.18746 1.18188 1.19789 0.97437 0.91481 1.38187 0.90110 1.17908 0.90723 0.91950 0.87311 1.21019 0.99598 0.97031 1.02502 1.20313 0.98205 0.91557 0.97463 1.19128 1.04663 0.91489 1.17639 1.18214 0.76609 0.84475 0.73644 1.93148 1.65213 1.95086 1.64042 1.93102 1.84401 1.95973 1.43388 1.93105 1.67327 1.60147 1.96243 1.20454 0.92517 0.96990 0.93527 1.18444 1.00400 0.93431 1.08396 1.18542 0.93864 0.96798 0.92131 1.21214 0.91034 1.01966 1.01052 1.17599 0.82895 0.98540 0.94727 1.91480 1.50058 1.80597 1.89738 1.21213 1.00025 0.98474 0.94539 1.21161 0.90402 1.01097 1.01435 1.18287 0.84367 0.97530 0.93651 1.91489 1.51601 1.80394 1.88637 0.89148 0.86364 0.86821 0.86341 0.84145 0.80568 0.81334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -37.30 10.87 21.85 0.24 -37.06 16 2 C 0.04 1.85 5.19 85.29 0.44 2.29 16 3 Si 0.97 34.37 29.59 68.60 2.03 36.40 16 4 H -0.26 -8.86 7.11 99.48 0.71 -8.15 16 5 H -0.26 -8.77 7.11 99.48 0.71 -8.06 16 6 H -0.26 -8.91 7.11 99.48 0.71 -8.21 16 7 C -0.44 -21.21 7.51 23.36 0.18 -21.03 16 8 H 0.08 3.80 7.08 -2.91 -0.02 3.78 16 9 C 0.12 6.10 5.47 -21.12 -0.12 5.98 16 10 C -0.18 -8.86 8.63 22.46 0.19 -8.67 16 11 C -0.06 -2.53 9.31 22.01 0.20 -2.32 16 12 C -0.33 -13.96 5.47 -19.74 -0.11 -14.07 16 13 C 0.52 20.01 3.36 71.24 0.24 20.25 16 14 F -0.19 -7.39 17.30 44.97 0.78 -6.61 16 15 F -0.19 -6.89 16.43 44.97 0.74 -6.16 16 16 F -0.19 -6.75 16.43 44.97 0.74 -6.01 16 17 C -0.02 -0.71 9.07 22.46 0.20 -0.50 16 18 C -0.21 -9.22 5.06 -19.61 -0.10 -9.32 16 19 C -0.01 -0.48 4.38 -20.01 -0.09 -0.57 16 20 C -0.13 -4.48 9.72 22.58 0.22 -4.26 16 21 C 0.08 2.33 7.29 22.34 0.16 2.49 16 22 F -0.14 -3.85 17.26 44.97 0.78 -3.07 16 23 C -0.12 -2.98 10.02 22.38 0.22 -2.75 16 24 C -0.12 -3.35 10.01 22.27 0.22 -3.13 16 25 C 0.08 3.01 6.50 22.66 0.15 3.16 16 26 F -0.14 -6.17 16.16 44.97 0.73 -5.44 16 27 H 0.30 12.58 8.29 -92.71 -0.77 11.81 16 28 H 0.12 5.89 6.13 -2.91 -0.02 5.87 16 29 H 0.11 4.62 7.57 -2.91 -0.02 4.59 16 30 H 0.12 4.56 7.58 -2.91 -0.02 4.53 16 31 H 0.14 4.53 8.06 -2.91 -0.02 4.51 16 32 H 0.18 2.83 8.06 -2.91 -0.02 2.80 16 33 H 0.17 3.52 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -52.69 313.16 9.25 -43.44 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: 1.20 Total: 16.98 kcal Atomic # 6 Polarization: -34.48 SS G_CDS: 2.03 Total: -32.46 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 0.24 Total: -37.06 kcal Atomic # 9 Polarization: -31.05 SS G_CDS: 3.76 Total: -27.29 kcal Atomic # 14 Polarization: 34.37 SS G_CDS: 2.03 Total: 36.40 kcal Total: -52.69 9.25 -43.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239713008.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.460 kcal (2) G-P(sol) polarization free energy of solvation -52.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds