Wall clock time and date at job start Tue Mar 31 2020 15:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86806 * 119.99953 * 2 1 4 4 H 1.48492 * 109.47326 * 274.87096 * 3 2 1 5 5 H 1.48503 * 109.47070 * 34.86959 * 3 2 1 6 6 H 1.48498 * 109.47024 * 154.86491 * 3 2 1 7 7 C 1.39990 * 120.00477 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00681 * 160.31227 * 7 2 1 9 9 C 1.40936 * 119.99612 * 340.31162 * 7 2 1 10 10 C 1.40953 * 120.13598 * 143.33283 * 9 7 2 11 11 C 1.36177 * 119.90256 * 180.02562 * 10 9 7 12 12 C 1.40037 * 120.18535 * 359.97438 * 11 10 9 13 13 C 1.47954 * 119.86458 * 179.97438 * 12 11 10 14 14 C 1.39607 * 120.15687 * 130.00082 * 13 12 11 15 15 C 1.37904 * 119.88088 * 180.27671 * 14 13 12 16 16 C 1.38447 * 120.19904 * 359.49470 * 15 14 13 17 17 C 1.50695 * 119.83667 * 180.27788 * 16 15 14 18 18 F 1.39906 * 109.46965 * 270.22796 * 17 16 15 19 19 F 1.39897 * 109.47234 * 30.22644 * 17 16 15 20 20 F 1.39898 * 109.46963 * 150.23297 * 17 16 15 21 21 C 1.38292 * 120.32100 * 0.50985 * 16 15 14 22 22 C 1.38228 * 120.11764 * 359.74292 * 21 16 15 23 23 F 1.35099 * 120.10061 * 179.97438 * 22 21 16 24 24 C 1.39807 * 120.27312 * 0.25952 * 12 11 10 25 25 C 1.36556 * 120.09213 * 359.47842 * 24 12 11 26 26 F 1.35097 * 120.09296 * 180.25725 * 25 24 12 27 27 H 0.96999 * 120.00181 * 0.02562 * 1 2 3 28 28 H 1.08005 * 120.04288 * 359.97438 * 10 9 7 29 29 H 1.08004 * 119.90593 * 180.02562 * 11 10 9 30 30 H 1.08003 * 120.06020 * 0.02562 * 14 13 12 31 31 H 1.08001 * 119.89651 * 179.74425 * 15 14 13 32 32 H 1.08005 * 119.94019 * 179.76929 * 21 16 15 33 33 H 1.07997 * 119.95293 * 179.72373 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3868 2.1059 -1.3949 5 1 1.4949 2.6208 0.8005 6 1 3.5874 1.4127 0.5947 7 6 2.0082 -1.2123 -0.0005 8 1 3.0409 -1.2395 -0.3156 9 6 1.3654 -2.3974 0.4102 10 6 1.6522 -3.6178 -0.2340 11 6 1.0279 -4.7599 0.1663 12 6 0.1022 -4.7253 1.2165 13 6 -0.5724 -5.9703 1.6453 14 6 -0.6000 -6.3237 2.9956 15 6 -1.2255 -7.4883 3.3884 16 6 -1.8348 -8.3025 2.4489 17 6 -2.5214 -9.5701 2.8878 18 9 -1.6041 -10.6264 2.8730 19 9 -3.0213 -9.4049 4.1839 20 9 -3.5758 -9.8560 2.0140 21 6 -1.8125 -7.9605 1.1091 22 6 -1.1848 -6.7988 0.7002 23 9 -1.1627 -6.4652 -0.6088 24 6 -0.1917 -3.5181 1.8575 25 6 0.4317 -2.3670 1.4687 26 9 0.1516 -1.2013 2.0916 27 1 -0.4850 0.8400 -0.0004 28 1 2.3656 -3.6469 -1.0445 29 1 1.2480 -5.6952 -0.3269 30 1 -0.1289 -5.6882 3.7309 31 1 -1.2434 -7.7641 4.4324 32 1 -2.2866 -8.6020 0.3810 33 1 -0.9098 -3.4965 2.6638 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240396432.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:33 Heat of formation + Delta-G solvation = -200.945932 kcal Electronic energy + Delta-G solvation = -26619.796949 eV Core-core repulsion = 21830.919791 eV Total energy + Delta-G solvation = -4788.877159 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.23611 -48.58182 -47.75514 -47.69502 -47.11720 -39.17508 -37.36860 -34.12406 -32.36391 -30.67995 -29.76343 -29.27358 -26.67771 -24.60140 -22.93276 -22.25141 -21.11551 -20.54976 -18.67278 -18.56059 -18.46671 -17.70621 -16.57062 -16.16361 -16.01877 -15.55900 -15.36644 -14.71919 -14.60793 -14.55693 -14.41510 -14.22073 -14.15619 -13.98228 -13.86626 -13.86251 -13.69702 -13.05349 -12.78316 -12.67341 -12.42978 -12.24190 -11.90961 -11.63925 -11.46644 -11.34727 -11.13939 -10.86092 -10.74256 -10.27001 -9.70594 -9.37716 -9.04042 -8.72111 -7.79306 -7.32734 -7.03454 -4.64485 0.78045 1.18679 2.38876 2.57945 2.67574 2.95132 2.98818 3.03950 3.46765 3.62101 3.78596 3.93243 4.33014 4.36202 4.48681 4.79771 4.93138 5.04545 5.19179 5.30810 5.59966 5.84253 5.88415 5.94938 6.03561 6.14276 6.28899 6.35558 6.61610 6.78825 6.81467 6.92365 7.25007 7.38150 7.57682 7.62918 7.91652 8.16811 8.49461 8.60464 9.92855 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.031821 B = 0.002768 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.722799 B =10111.882485 C =10447.209974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.761 5.761 2 C 0.075 3.925 3 Si 0.913 3.087 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.451 4.451 8 H 0.090 0.910 9 C 0.098 3.902 10 C -0.199 4.199 11 C -0.061 4.061 12 C -0.198 4.198 13 C 0.019 3.981 14 C -0.104 4.104 15 C -0.076 4.076 16 C -0.190 4.190 17 C 0.514 3.486 18 F -0.179 7.179 19 F -0.178 7.178 20 F -0.179 7.179 21 C -0.103 4.103 22 C 0.087 3.913 23 F -0.126 7.126 24 C -0.098 4.098 25 C 0.031 3.969 26 F -0.143 7.143 27 H 0.288 0.712 28 H 0.107 0.893 29 H 0.097 0.903 30 H 0.142 0.858 31 H 0.136 0.864 32 H 0.141 0.859 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.853 -11.750 4.603 12.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.383 5.383 2 C -0.148 4.148 3 Si 0.737 3.263 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.478 4.478 8 H 0.108 0.892 9 C 0.094 3.906 10 C -0.219 4.219 11 C -0.079 4.079 12 C -0.199 4.199 13 C 0.018 3.982 14 C -0.122 4.122 15 C -0.094 4.094 16 C -0.192 4.192 17 C 0.460 3.540 18 F -0.160 7.160 19 F -0.159 7.159 20 F -0.160 7.160 21 C -0.122 4.122 22 C 0.068 3.932 23 F -0.104 7.104 24 C -0.118 4.118 25 C 0.011 3.989 26 F -0.122 7.122 27 H 0.099 0.901 28 H 0.125 0.875 29 H 0.115 0.885 30 H 0.160 0.840 31 H 0.154 0.846 32 H 0.159 0.841 33 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.103 -11.554 4.565 12.805 hybrid contribution -0.044 0.767 -0.147 0.782 sum -3.147 -10.787 4.418 12.074 Atomic orbital electron populations 1.69745 1.07983 1.30530 1.30034 1.25938 0.94744 1.01702 0.92407 0.86195 0.80804 0.80168 0.79145 1.19375 1.19730 1.18138 1.19548 0.99160 0.91233 1.37817 0.89205 1.17718 0.90133 0.93619 0.89126 1.20587 1.06298 0.92333 1.02647 1.20370 0.95770 0.97199 0.94574 1.17510 1.07174 0.90199 1.05023 1.19243 0.93122 0.93611 0.92210 1.21223 0.99680 0.96193 0.95116 1.20838 0.95539 0.93885 0.99128 1.19537 1.07991 0.96550 0.95110 1.18217 0.76721 0.84371 0.74727 1.93220 1.66575 1.59983 1.96215 1.93179 1.88134 1.95605 1.39015 1.93181 1.58937 1.94480 1.69437 1.20656 0.99824 0.96492 0.95217 1.17601 1.01362 0.95260 0.78979 1.91528 1.94663 1.92205 1.32046 1.20282 0.99703 0.91628 1.00151 1.17381 1.04144 0.80520 0.96841 1.91338 1.92754 1.47240 1.80878 0.90061 0.87490 0.88461 0.83981 0.84616 0.84108 0.87734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -19.26 11.09 55.55 0.62 -18.65 16 2 C 0.07 1.81 4.50 -17.33 -0.08 1.73 16 3 Si 0.91 17.96 29.60 -169.99 -5.03 12.93 16 4 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 5 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 6 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 7 C -0.45 -11.23 8.90 -37.90 -0.34 -11.57 16 8 H 0.09 2.10 7.92 -52.49 -0.42 1.69 16 9 C 0.10 2.44 5.40 -106.73 -0.58 1.86 16 10 C -0.20 -4.48 9.73 -39.30 -0.38 -4.86 16 11 C -0.06 -1.25 8.79 -39.65 -0.35 -1.60 16 12 C -0.20 -4.00 5.34 -104.66 -0.56 -4.56 16 13 C 0.02 0.32 5.47 -104.82 -0.57 -0.25 16 14 C -0.10 -1.47 9.51 -39.19 -0.37 -1.84 16 15 C -0.08 -0.93 9.38 -39.63 -0.37 -1.30 16 16 C -0.19 -2.43 5.46 -104.53 -0.57 -3.00 16 17 C 0.51 6.06 3.36 36.00 0.12 6.18 16 18 F -0.18 -2.14 17.30 2.25 0.04 -2.10 16 19 F -0.18 -2.06 16.45 2.25 0.04 -2.02 16 20 F -0.18 -2.14 16.45 2.25 0.04 -2.11 16 21 C -0.10 -1.40 9.36 -39.57 -0.37 -1.77 16 22 C 0.09 1.42 7.16 -39.00 -0.28 1.14 16 23 F -0.13 -2.23 15.89 2.25 0.04 -2.20 16 24 C -0.10 -2.13 9.41 -39.60 -0.37 -2.51 16 25 C 0.03 0.78 6.63 -39.07 -0.26 0.52 16 26 F -0.14 -3.69 14.24 2.25 0.03 -3.66 16 27 H 0.29 6.65 8.30 -40.82 -0.34 6.31 16 28 H 0.11 2.22 8.06 -52.48 -0.42 1.80 16 29 H 0.10 1.81 7.77 -52.48 -0.41 1.41 16 30 H 0.14 1.82 8.04 -52.48 -0.42 1.39 16 31 H 0.14 1.33 7.60 -52.49 -0.40 0.93 16 32 H 0.14 1.65 7.59 -52.48 -0.40 1.26 16 33 H 0.10 2.05 8.04 -52.49 -0.42 1.63 16 LS Contribution 314.05 15.07 4.73 4.73 Total: -1.00 -25.88 314.05 -6.85 -32.73 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -2.02 Total: 2.17 kcal Atomic # 6 Polarization: -16.49 SS G_CDS: -5.33 Total: -21.82 kcal Atomic # 7 Polarization: -19.26 SS G_CDS: 0.62 Total: -18.65 kcal Atomic # 9 Polarization: -12.26 SS G_CDS: 0.18 Total: -12.08 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.93 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -25.88 -6.85 -32.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240396432.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.216 kcal (2) G-P(sol) polarization free energy of solvation -25.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds