Wall clock time and date at job start Tue Mar 31 2020 15:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86806 * 119.99953 * 2 1 4 4 H 1.48492 * 109.47326 * 274.87096 * 3 2 1 5 5 H 1.48503 * 109.47070 * 34.86959 * 3 2 1 6 6 H 1.48498 * 109.47024 * 154.86491 * 3 2 1 7 7 C 1.39990 * 120.00477 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00681 * 160.31227 * 7 2 1 9 9 C 1.40936 * 119.99612 * 340.31162 * 7 2 1 10 10 C 1.40953 * 120.13598 * 143.33283 * 9 7 2 11 11 C 1.36177 * 119.90256 * 180.02562 * 10 9 7 12 12 C 1.40037 * 120.18535 * 359.97438 * 11 10 9 13 13 C 1.47954 * 119.86458 * 179.97438 * 12 11 10 14 14 C 1.39607 * 120.15687 * 130.00082 * 13 12 11 15 15 C 1.37904 * 119.88088 * 180.27671 * 14 13 12 16 16 C 1.38447 * 120.19904 * 359.49470 * 15 14 13 17 17 C 1.50695 * 119.83667 * 180.27788 * 16 15 14 18 18 F 1.39906 * 109.46965 * 270.22796 * 17 16 15 19 19 F 1.39897 * 109.47234 * 30.22644 * 17 16 15 20 20 F 1.39898 * 109.46963 * 150.23297 * 17 16 15 21 21 C 1.38292 * 120.32100 * 0.50985 * 16 15 14 22 22 C 1.38228 * 120.11764 * 359.74292 * 21 16 15 23 23 F 1.35099 * 120.10061 * 179.97438 * 22 21 16 24 24 C 1.39807 * 120.27312 * 0.25952 * 12 11 10 25 25 C 1.36556 * 120.09213 * 359.47842 * 24 12 11 26 26 F 1.35097 * 120.09296 * 180.25725 * 25 24 12 27 27 H 0.96999 * 120.00181 * 0.02562 * 1 2 3 28 28 H 1.08005 * 120.04288 * 359.97438 * 10 9 7 29 29 H 1.08004 * 119.90593 * 180.02562 * 11 10 9 30 30 H 1.08003 * 120.06020 * 0.02562 * 14 13 12 31 31 H 1.08001 * 119.89651 * 179.74425 * 15 14 13 32 32 H 1.08005 * 119.94019 * 179.76929 * 21 16 15 33 33 H 1.07997 * 119.95293 * 179.72373 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3868 2.1059 -1.3949 5 1 1.4949 2.6208 0.8005 6 1 3.5874 1.4127 0.5947 7 6 2.0082 -1.2123 -0.0005 8 1 3.0409 -1.2395 -0.3156 9 6 1.3654 -2.3974 0.4102 10 6 1.6522 -3.6178 -0.2340 11 6 1.0279 -4.7599 0.1663 12 6 0.1022 -4.7253 1.2165 13 6 -0.5724 -5.9703 1.6453 14 6 -0.6000 -6.3237 2.9956 15 6 -1.2255 -7.4883 3.3884 16 6 -1.8348 -8.3025 2.4489 17 6 -2.5214 -9.5701 2.8878 18 9 -1.6041 -10.6264 2.8730 19 9 -3.0213 -9.4049 4.1839 20 9 -3.5758 -9.8560 2.0140 21 6 -1.8125 -7.9605 1.1091 22 6 -1.1848 -6.7988 0.7002 23 9 -1.1627 -6.4652 -0.6088 24 6 -0.1917 -3.5181 1.8575 25 6 0.4317 -2.3670 1.4687 26 9 0.1516 -1.2013 2.0916 27 1 -0.4850 0.8400 -0.0004 28 1 2.3656 -3.6469 -1.0445 29 1 1.2480 -5.6952 -0.3269 30 1 -0.1289 -5.6882 3.7309 31 1 -1.2434 -7.7641 4.4324 32 1 -2.2866 -8.6020 0.3810 33 1 -0.9098 -3.4965 2.6638 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240396432.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:33 Heat of formation + Delta-G solvation = -210.585463 kcal Electronic energy + Delta-G solvation = -26620.214951 eV Core-core repulsion = 21830.919791 eV Total energy + Delta-G solvation = -4789.295160 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -51.17899 -49.90168 -49.01598 -48.69146 -48.63650 -40.44055 -38.97682 -35.80352 -33.77905 -31.83948 -31.37280 -30.92723 -28.06695 -26.02827 -24.14566 -23.60157 -22.79559 -22.04352 -19.74254 -19.51489 -19.49994 -19.41108 -18.09415 -17.41201 -17.29498 -17.14695 -16.73733 -16.33988 -16.09806 -15.82640 -15.72657 -15.50006 -15.47326 -15.11635 -14.98019 -14.79288 -14.71607 -14.53809 -14.32908 -14.11233 -13.77888 -13.57394 -13.36047 -13.25945 -13.06208 -12.80304 -12.64151 -12.44918 -12.15636 -11.89953 -11.43216 -11.04161 -10.34923 -9.94498 -9.50471 -9.07328 -8.76890 -6.48377 -0.42040 0.05783 0.74790 0.88249 1.36062 1.43006 1.51654 1.58716 2.16280 2.26291 2.60844 2.64503 2.93791 3.28105 3.39204 3.41076 3.64645 3.75302 3.93637 4.12949 4.14995 4.26836 4.42695 4.52193 4.80893 4.85476 4.92093 5.02044 5.07912 5.15634 5.20868 5.47279 5.59465 5.71576 5.85501 5.89054 6.15395 6.37160 6.72608 6.81319 8.22031 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.031821 B = 0.002768 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.722799 B =10111.882485 C =10447.209974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.036 3.964 3 Si 0.981 3.019 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.255 1.255 7 C -0.494 4.494 8 H 0.091 0.909 9 C 0.068 3.932 10 C -0.206 4.206 11 C -0.067 4.067 12 C -0.176 4.176 13 C -0.012 4.012 14 C -0.094 4.094 15 C -0.063 4.063 16 C -0.179 4.179 17 C 0.521 3.479 18 F -0.177 7.177 19 F -0.173 7.173 20 F -0.178 7.178 21 C -0.097 4.097 22 C 0.075 3.925 23 F -0.140 7.140 24 C -0.102 4.102 25 C -0.001 4.001 26 F -0.157 7.157 27 H 0.291 0.709 28 H 0.116 0.884 29 H 0.119 0.881 30 H 0.156 0.844 31 H 0.169 0.831 32 H 0.161 0.839 33 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.422 -14.039 5.867 15.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.182 4.182 3 Si 0.801 3.199 4 H -0.183 1.183 5 H -0.195 1.195 6 H -0.178 1.178 7 C -0.522 4.522 8 H 0.109 0.891 9 C 0.064 3.936 10 C -0.225 4.225 11 C -0.085 4.085 12 C -0.177 4.177 13 C -0.013 4.013 14 C -0.112 4.112 15 C -0.081 4.081 16 C -0.181 4.181 17 C 0.467 3.533 18 F -0.158 7.158 19 F -0.154 7.154 20 F -0.160 7.160 21 C -0.116 4.116 22 C 0.056 3.944 23 F -0.119 7.119 24 C -0.121 4.121 25 C -0.021 4.021 26 F -0.136 7.136 27 H 0.102 0.898 28 H 0.134 0.866 29 H 0.137 0.863 30 H 0.174 0.826 31 H 0.187 0.813 32 H 0.178 0.822 33 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.670 -13.871 5.827 15.486 hybrid contribution -0.009 1.042 -0.430 1.128 sum -3.679 -12.828 5.397 14.396 Atomic orbital electron populations 1.69801 1.09409 1.31335 1.32495 1.26744 0.95343 1.04718 0.91372 0.85200 0.79331 0.75877 0.79511 1.18270 1.19484 1.17830 1.19755 0.99580 0.92341 1.40505 0.89143 1.18054 0.91090 0.94645 0.89775 1.20816 1.06537 0.92385 1.02807 1.20646 0.95459 0.97485 0.94944 1.17863 1.05418 0.91164 1.03263 1.19178 0.95167 0.93039 0.93873 1.21377 0.99075 0.96878 0.93899 1.21164 0.93744 0.92520 1.00699 1.19774 1.06740 0.96711 0.94861 1.17988 0.76601 0.83824 0.74858 1.93234 1.66558 1.59804 1.96217 1.93199 1.88048 1.95553 1.38634 1.93194 1.58893 1.94421 1.69473 1.20818 0.98959 0.95659 0.96166 1.17767 1.02300 0.96067 0.78270 1.91496 1.94876 1.92460 1.33039 1.20528 0.99675 0.91219 1.00702 1.17753 1.05676 0.80978 0.97737 1.91283 1.92977 1.48190 1.81128 0.89821 0.86604 0.86287 0.82628 0.81328 0.82187 0.85829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.72 11.09 21.84 0.24 -42.48 16 2 C 0.04 1.82 4.50 85.27 0.38 2.20 16 3 Si 0.98 37.98 29.60 68.60 2.03 40.01 16 4 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 5 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 6 H -0.25 -9.58 7.11 99.48 0.71 -8.88 16 7 C -0.49 -25.82 8.90 23.36 0.21 -25.62 16 8 H 0.09 4.47 7.92 -2.91 -0.02 4.44 16 9 C 0.07 3.51 5.40 -21.23 -0.11 3.40 16 10 C -0.21 -9.49 9.73 22.46 0.22 -9.27 16 11 C -0.07 -2.76 8.79 22.23 0.20 -2.56 16 12 C -0.18 -6.98 5.34 -19.89 -0.11 -7.08 16 13 C -0.01 -0.37 5.47 -19.99 -0.11 -0.48 16 14 C -0.09 -2.34 9.51 22.52 0.21 -2.13 16 15 C -0.06 -1.27 9.38 22.24 0.21 -1.06 16 16 C -0.18 -3.84 5.46 -19.80 -0.11 -3.94 16 17 C 0.52 10.17 3.36 71.23 0.24 10.41 16 18 F -0.18 -3.54 17.30 44.97 0.78 -2.76 16 19 F -0.17 -3.27 16.45 44.97 0.74 -2.53 16 20 F -0.18 -3.62 16.45 44.97 0.74 -2.88 16 21 C -0.10 -2.33 9.36 22.28 0.21 -2.12 16 22 C 0.08 2.28 7.16 22.65 0.16 2.44 16 23 F -0.14 -4.80 15.89 44.97 0.71 -4.08 16 24 C -0.10 -4.46 9.41 22.26 0.21 -4.25 16 25 C 0.00 -0.06 6.63 22.60 0.15 0.09 16 26 F -0.16 -8.43 14.24 44.97 0.64 -7.79 16 27 H 0.29 14.07 8.30 -92.71 -0.77 13.30 16 28 H 0.12 4.95 8.06 -2.91 -0.02 4.93 16 29 H 0.12 4.31 7.77 -2.91 -0.02 4.29 16 30 H 0.16 3.45 8.04 -2.91 -0.02 3.42 16 31 H 0.17 2.35 7.60 -2.91 -0.02 2.33 16 32 H 0.16 3.20 7.59 -2.91 -0.02 3.18 16 33 H 0.12 4.77 8.04 -2.91 -0.02 4.75 16 Total: -1.00 -58.00 314.05 9.04 -48.97 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 1.19 Total: 13.53 kcal Atomic # 6 Polarization: -41.94 SS G_CDS: 1.96 Total: -39.99 kcal Atomic # 7 Polarization: -42.72 SS G_CDS: 0.24 Total: -42.48 kcal Atomic # 9 Polarization: -23.66 SS G_CDS: 3.61 Total: -20.04 kcal Atomic # 14 Polarization: 37.98 SS G_CDS: 2.03 Total: 40.01 kcal Total: -58.00 9.04 -48.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240396432.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.620 kcal (2) G-P(sol) polarization free energy of solvation -58.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds