Wall clock time and date at job start Tue Mar 31 2020 15:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30810 * 1 3 3 Si 1.86808 * 119.99992 * 2 1 4 4 H 1.48496 * 109.47003 * 240.00457 * 3 2 1 5 5 H 1.48503 * 109.46753 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46681 * 120.00078 * 3 2 1 7 7 C 1.39983 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00294 * 197.95814 * 7 2 1 9 9 C 1.41021 * 120.00159 * 17.95750 * 7 2 1 10 10 C 1.40977 * 120.10001 * 204.71580 * 9 7 2 11 11 C 1.36226 * 119.92483 * 180.02562 * 10 9 7 12 12 C 1.39955 * 120.14389 * 359.97438 * 11 10 9 13 13 C 1.47902 * 119.90106 * 179.97438 * 12 11 10 14 14 C 1.39635 * 120.15643 * 64.99923 * 13 12 11 15 15 C 1.37887 * 119.87368 * 180.02562 * 14 13 12 16 16 C 1.38448 * 120.20788 * 0.27270 * 15 14 13 17 17 C 1.50704 * 119.83815 * 179.70204 * 16 15 14 18 18 F 1.39902 * 109.47098 * 90.00183 * 17 16 15 19 19 F 1.39903 * 109.46981 * 210.00256 * 17 16 15 20 20 F 1.39895 * 109.47161 * 330.00262 * 17 16 15 21 21 C 1.38305 * 120.32359 * 359.44990 * 16 15 14 22 22 C 1.38215 * 120.11720 * 0.54751 * 21 16 15 23 23 F 1.35103 * 120.09920 * 179.70231 * 22 21 16 24 24 C 1.40181 * 120.20252 * 0.27015 * 12 11 10 25 25 F 1.35096 * 119.96539 * 179.70934 * 24 12 11 26 26 C 1.36465 * 120.06714 * 359.44481 * 24 12 11 27 27 H 0.97003 * 120.00015 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.03802 * 359.97438 * 10 9 7 29 29 H 1.08000 * 119.92577 * 179.97438 * 11 10 9 30 30 H 1.08002 * 120.06300 * 0.04663 * 14 13 12 31 31 H 1.08001 * 119.89581 * 180.02562 * 15 14 13 32 32 H 1.07999 * 119.93679 * 180.30241 * 21 16 15 33 33 H 1.07997 * 120.07320 * 180.27155 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.0958 1.6965 -1.2125 5 1 1.2770 2.7465 0.0006 6 1 3.0959 1.6964 1.2125 7 6 2.0080 -1.2123 -0.0005 8 1 3.0486 -1.2352 0.2878 9 6 1.3545 -2.4037 -0.3776 10 6 1.8269 -3.6473 0.0890 11 6 1.1932 -4.7960 -0.2779 12 6 0.0739 -4.7442 -1.1166 13 6 -0.6096 -5.9947 -1.5120 14 6 -1.2508 -6.7780 -0.5502 15 6 -1.8858 -7.9431 -0.9252 16 6 -1.8848 -8.3412 -2.2512 17 6 -2.5757 -9.6195 -2.6509 18 9 -3.9089 -9.3471 -2.9760 19 9 -1.9284 -10.1720 -3.7613 20 9 -2.5313 -10.5261 -1.5863 21 6 -1.2572 -7.5689 -3.2117 22 6 -0.6166 -6.3986 -2.8507 23 9 0.0014 -5.6475 -3.7884 24 6 -0.3975 -3.5110 -1.5880 25 9 -1.4748 -3.4670 -2.4021 26 6 0.2273 -2.3547 -1.2211 27 1 -0.4850 0.8401 0.0004 28 1 2.6906 -3.6893 0.7359 29 1 1.5553 -5.7488 0.0792 30 1 -1.2496 -6.4718 0.4855 31 1 -2.3822 -8.5490 -0.1817 32 1 -1.2645 -7.8829 -4.2450 33 1 -0.1385 -1.4043 -1.5807 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240397165.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:53 Heat of formation + Delta-G solvation = -207.969716 kcal Electronic energy + Delta-G solvation = -26766.318701 eV Core-core repulsion = 21977.136968 eV Total energy + Delta-G solvation = -4789.181733 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.22427 -48.54766 -47.76693 -47.74477 -47.67912 -39.08488 -37.45682 -34.24061 -32.34736 -30.64154 -29.51619 -29.29789 -26.73605 -24.68129 -22.85973 -22.20803 -21.25729 -20.48393 -18.65230 -18.54532 -18.46256 -17.83372 -16.37606 -16.13768 -15.96206 -15.87891 -15.35813 -14.97436 -14.65621 -14.58797 -14.53760 -14.38241 -14.16540 -13.99798 -13.85101 -13.80865 -13.65090 -13.14544 -12.82820 -12.76124 -12.38692 -12.18569 -12.06223 -11.76022 -11.54094 -11.29259 -11.02781 -10.85940 -10.61985 -10.16037 -9.90225 -9.42377 -9.05801 -8.66982 -7.72051 -7.55825 -7.09410 -4.71877 0.85496 1.22370 2.36008 2.58759 2.74061 2.90355 2.92116 2.97646 3.46069 3.62880 3.68887 3.94479 4.22931 4.37167 4.51144 4.82888 4.96627 5.10704 5.27608 5.35139 5.49866 5.64496 5.96957 5.99832 6.09318 6.21385 6.39774 6.52429 6.69814 6.75801 6.84712 6.94633 7.33045 7.43207 7.55490 7.68235 7.94399 8.26436 8.50550 8.56918 9.81251 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.031861 B = 0.002836 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.609537 B = 9870.488249 C =10031.918671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.073 3.927 3 Si 0.916 3.084 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.440 4.440 8 H 0.088 0.912 9 C 0.138 3.862 10 C -0.235 4.235 11 C -0.034 4.034 12 C -0.262 4.262 13 C 0.018 3.982 14 C -0.094 4.094 15 C -0.081 4.081 16 C -0.183 4.183 17 C 0.514 3.486 18 F -0.178 7.178 19 F -0.179 7.179 20 F -0.178 7.178 21 C -0.108 4.108 22 C 0.098 3.902 23 F -0.125 7.125 24 C 0.144 3.856 25 F -0.161 7.161 26 C -0.209 4.209 27 H 0.289 0.711 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.143 0.857 31 H 0.137 0.863 32 H 0.141 0.859 33 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.904 -11.196 -1.760 11.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.149 4.149 3 Si 0.739 3.261 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.467 4.467 8 H 0.106 0.894 9 C 0.134 3.866 10 C -0.254 4.254 11 C -0.053 4.053 12 C -0.264 4.264 13 C 0.017 3.983 14 C -0.112 4.112 15 C -0.099 4.099 16 C -0.184 4.184 17 C 0.460 3.540 18 F -0.159 7.159 19 F -0.160 7.160 20 F -0.159 7.159 21 C -0.127 4.127 22 C 0.079 3.921 23 F -0.103 7.103 24 C 0.125 3.875 25 F -0.140 7.140 26 C -0.230 4.230 27 H 0.100 0.900 28 H 0.121 0.879 29 H 0.119 0.881 30 H 0.161 0.839 31 H 0.155 0.845 32 H 0.159 0.841 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.159 -11.026 -1.822 11.613 hybrid contribution 0.033 0.680 -0.389 0.784 sum -3.126 -10.346 -2.211 11.032 Atomic orbital electron populations 1.69794 1.07900 1.30422 1.31122 1.26107 0.94852 1.02056 0.91872 0.86224 0.80181 0.79308 0.80388 1.18384 1.19975 1.18585 1.19717 0.98525 0.91090 1.37347 0.89394 1.17454 0.89607 0.92451 0.87054 1.20711 1.04699 0.92432 1.07561 1.20095 0.93244 0.97236 0.94677 1.17691 1.05002 0.88673 1.15071 1.19146 0.94029 0.94544 0.90584 1.21291 0.96252 0.93447 1.00245 1.20850 0.98364 0.96738 0.93963 1.19577 1.06749 0.96183 0.95910 1.18216 0.76908 0.84429 0.74496 1.93224 1.36138 1.93819 1.92714 1.93182 1.81365 1.87138 1.54330 1.93177 1.96304 1.69832 1.56592 1.20661 0.97978 0.93869 1.00181 1.17742 0.97315 0.90466 0.86593 1.91527 1.80146 1.75151 1.63524 1.17294 0.84839 0.94004 0.91399 1.91356 1.53927 1.97498 1.71255 1.20932 1.01498 0.96091 1.04433 0.89969 0.87896 0.88149 0.83890 0.84538 0.84078 0.85162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.36 10.96 55.55 0.61 -17.76 16 2 C 0.07 1.67 5.13 -17.33 -0.09 1.58 16 3 Si 0.92 16.93 29.60 -169.99 -5.03 11.90 16 4 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 5 H -0.28 -4.98 7.11 56.52 0.40 -4.58 16 6 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 7 C -0.44 -10.54 9.03 -37.87 -0.34 -10.88 16 8 H 0.09 1.98 7.91 -52.48 -0.42 1.56 16 9 C 0.14 3.37 5.57 -106.81 -0.60 2.78 16 10 C -0.23 -5.17 9.73 -39.27 -0.38 -5.55 16 11 C -0.03 -0.69 9.66 -39.66 -0.38 -1.08 16 12 C -0.26 -5.57 5.05 -104.57 -0.53 -6.10 16 13 C 0.02 0.33 5.00 -104.82 -0.52 -0.20 16 14 C -0.09 -1.41 9.74 -39.19 -0.38 -1.79 16 15 C -0.08 -1.05 9.38 -39.63 -0.37 -1.42 16 16 C -0.18 -2.46 5.46 -104.52 -0.57 -3.03 16 17 C 0.51 6.30 3.36 36.01 0.12 6.43 16 18 F -0.18 -2.25 17.30 2.25 0.04 -2.21 16 19 F -0.18 -2.20 16.46 2.25 0.04 -2.16 16 20 F -0.18 -2.10 16.45 2.25 0.04 -2.06 16 21 C -0.11 -1.58 9.36 -39.57 -0.37 -1.95 16 22 C 0.10 1.73 7.05 -38.99 -0.27 1.45 16 23 F -0.13 -2.42 16.67 2.25 0.04 -2.38 16 24 C 0.14 3.40 7.00 -39.49 -0.28 3.13 16 25 F -0.16 -3.79 16.63 2.25 0.04 -3.75 16 26 C -0.21 -5.24 8.60 -39.23 -0.34 -5.57 16 27 H 0.29 6.25 8.30 -40.82 -0.34 5.91 16 28 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 29 H 0.10 1.75 8.06 -52.49 -0.42 1.32 16 30 H 0.14 1.93 8.06 -52.49 -0.42 1.51 16 31 H 0.14 1.40 7.59 -52.49 -0.40 1.00 16 32 H 0.14 1.78 7.60 -52.49 -0.40 1.38 16 33 H 0.13 3.39 6.16 -52.49 -0.32 3.07 16 LS Contribution 316.22 15.07 4.77 4.77 Total: -1.00 -25.06 316.22 -6.71 -31.77 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -1.94 Total: 4.08 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: -5.31 Total: -22.21 kcal Atomic # 7 Polarization: -18.36 SS G_CDS: 0.61 Total: -17.76 kcal Atomic # 9 Polarization: -12.75 SS G_CDS: 0.19 Total: -12.56 kcal Atomic # 14 Polarization: 16.93 SS G_CDS: -5.03 Total: 11.90 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -25.06 -6.71 -31.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240397165.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.196 kcal (2) G-P(sol) polarization free energy of solvation -25.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds