Wall clock time and date at job start Tue Mar 31 2020 15:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30810 * 1 3 3 Si 1.86808 * 119.99992 * 2 1 4 4 H 1.48496 * 109.47003 * 240.00457 * 3 2 1 5 5 H 1.48503 * 109.46753 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46681 * 120.00078 * 3 2 1 7 7 C 1.39983 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00294 * 197.95814 * 7 2 1 9 9 C 1.41021 * 120.00159 * 17.95750 * 7 2 1 10 10 C 1.40977 * 120.10001 * 204.71580 * 9 7 2 11 11 C 1.36226 * 119.92483 * 180.02562 * 10 9 7 12 12 C 1.39955 * 120.14389 * 359.97438 * 11 10 9 13 13 C 1.47902 * 119.90106 * 179.97438 * 12 11 10 14 14 C 1.39635 * 120.15643 * 64.99923 * 13 12 11 15 15 C 1.37887 * 119.87368 * 180.02562 * 14 13 12 16 16 C 1.38448 * 120.20788 * 0.27270 * 15 14 13 17 17 C 1.50704 * 119.83815 * 179.70204 * 16 15 14 18 18 F 1.39902 * 109.47098 * 90.00183 * 17 16 15 19 19 F 1.39903 * 109.46981 * 210.00256 * 17 16 15 20 20 F 1.39895 * 109.47161 * 330.00262 * 17 16 15 21 21 C 1.38305 * 120.32359 * 359.44990 * 16 15 14 22 22 C 1.38215 * 120.11720 * 0.54751 * 21 16 15 23 23 F 1.35103 * 120.09920 * 179.70231 * 22 21 16 24 24 C 1.40181 * 120.20252 * 0.27015 * 12 11 10 25 25 F 1.35096 * 119.96539 * 179.70934 * 24 12 11 26 26 C 1.36465 * 120.06714 * 359.44481 * 24 12 11 27 27 H 0.97003 * 120.00015 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.03802 * 359.97438 * 10 9 7 29 29 H 1.08000 * 119.92577 * 179.97438 * 11 10 9 30 30 H 1.08002 * 120.06300 * 0.04663 * 14 13 12 31 31 H 1.08001 * 119.89581 * 180.02562 * 15 14 13 32 32 H 1.07999 * 119.93679 * 180.30241 * 21 16 15 33 33 H 1.07997 * 120.07320 * 180.27155 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.0958 1.6965 -1.2125 5 1 1.2770 2.7465 0.0006 6 1 3.0959 1.6964 1.2125 7 6 2.0080 -1.2123 -0.0005 8 1 3.0486 -1.2352 0.2878 9 6 1.3545 -2.4037 -0.3776 10 6 1.8269 -3.6473 0.0890 11 6 1.1932 -4.7960 -0.2779 12 6 0.0739 -4.7442 -1.1166 13 6 -0.6096 -5.9947 -1.5120 14 6 -1.2508 -6.7780 -0.5502 15 6 -1.8858 -7.9431 -0.9252 16 6 -1.8848 -8.3412 -2.2512 17 6 -2.5757 -9.6195 -2.6509 18 9 -3.9089 -9.3471 -2.9760 19 9 -1.9284 -10.1720 -3.7613 20 9 -2.5313 -10.5261 -1.5863 21 6 -1.2572 -7.5689 -3.2117 22 6 -0.6166 -6.3986 -2.8507 23 9 0.0014 -5.6475 -3.7884 24 6 -0.3975 -3.5110 -1.5880 25 9 -1.4748 -3.4670 -2.4021 26 6 0.2273 -2.3547 -1.2211 27 1 -0.4850 0.8401 0.0004 28 1 2.6906 -3.6893 0.7359 29 1 1.5553 -5.7488 0.0792 30 1 -1.2496 -6.4718 0.4855 31 1 -2.3822 -8.5490 -0.1817 32 1 -1.2645 -7.8829 -4.2450 33 1 -0.1385 -1.4043 -1.5807 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240397165.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:52 Heat of formation + Delta-G solvation = -216.759669 kcal Electronic energy + Delta-G solvation = -26766.699862 eV Core-core repulsion = 21977.136968 eV Total energy + Delta-G solvation = -4789.562894 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.19995 -49.98698 -49.58722 -48.70623 -48.66021 -40.37164 -39.10498 -35.89529 -33.76798 -31.84084 -31.09876 -31.03777 -28.16620 -26.08968 -24.09678 -23.58925 -22.95007 -22.03273 -19.77151 -19.60530 -19.52207 -19.44428 -17.93522 -17.48019 -17.42747 -17.21064 -16.89970 -16.59227 -16.34141 -16.20736 -15.61447 -15.51919 -15.26651 -15.11950 -14.99030 -14.81209 -14.74863 -14.70102 -14.39233 -14.17199 -13.92289 -13.54448 -13.49690 -13.13004 -13.03947 -12.82943 -12.50107 -12.40214 -12.10789 -11.87344 -11.58064 -11.10832 -10.32552 -9.94326 -9.48130 -9.29574 -8.79182 -6.51612 -0.37624 0.03481 0.67681 0.94400 1.37779 1.47840 1.51726 1.55885 2.14205 2.23264 2.54351 2.58711 2.91658 3.29772 3.37427 3.48958 3.69554 3.72344 3.74430 3.92649 4.14749 4.35148 4.46388 4.75118 4.81203 4.88772 4.95119 4.97561 5.03936 5.16396 5.24349 5.53690 5.59450 5.71651 5.82167 5.91558 6.17426 6.48463 6.73500 6.79624 8.14630 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.031861 B = 0.002836 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.609537 B = 9870.488249 C =10031.918671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.034 3.966 3 Si 0.987 3.013 4 H -0.260 1.260 5 H -0.269 1.269 6 H -0.251 1.251 7 C -0.474 4.474 8 H 0.095 0.905 9 C 0.111 3.889 10 C -0.241 4.241 11 C -0.032 4.032 12 C -0.250 4.250 13 C -0.014 4.014 14 C -0.088 4.088 15 C -0.065 4.065 16 C -0.176 4.176 17 C 0.523 3.477 18 F -0.178 7.178 19 F -0.177 7.177 20 F -0.170 7.170 21 C -0.102 4.102 22 C 0.075 3.925 23 F -0.144 7.144 24 C 0.124 3.876 25 F -0.167 7.167 26 C -0.236 4.236 27 H 0.294 0.706 28 H 0.120 0.880 29 H 0.137 0.863 30 H 0.159 0.841 31 H 0.173 0.827 32 H 0.159 0.841 33 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.023 -13.333 -1.022 13.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.184 4.184 3 Si 0.807 3.193 4 H -0.184 1.184 5 H -0.193 1.193 6 H -0.175 1.175 7 C -0.501 4.501 8 H 0.113 0.887 9 C 0.108 3.892 10 C -0.260 4.260 11 C -0.050 4.050 12 C -0.252 4.252 13 C -0.015 4.015 14 C -0.106 4.106 15 C -0.083 4.083 16 C -0.177 4.177 17 C 0.469 3.531 18 F -0.159 7.159 19 F -0.159 7.159 20 F -0.152 7.152 21 C -0.120 4.120 22 C 0.056 3.944 23 F -0.123 7.123 24 C 0.105 3.895 25 F -0.146 7.146 26 C -0.256 4.256 27 H 0.105 0.895 28 H 0.138 0.862 29 H 0.155 0.845 30 H 0.177 0.823 31 H 0.190 0.810 32 H 0.177 0.823 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.282 -13.187 -1.084 13.632 hybrid contribution -0.043 1.088 -0.653 1.270 sum -3.325 -12.099 -1.737 12.667 Atomic orbital electron populations 1.69857 1.09439 1.31514 1.32275 1.26971 0.95457 1.05194 0.90800 0.85158 0.78778 0.74879 0.80491 1.18387 1.19345 1.17502 1.20010 0.99079 0.91967 1.39017 0.88693 1.17785 0.89909 0.93963 0.87570 1.20982 1.05254 0.92180 1.07617 1.20473 0.92377 0.98260 0.93849 1.18009 1.04650 0.89116 1.13377 1.19153 0.96231 0.94353 0.91746 1.21442 0.95460 0.93403 1.00281 1.21198 0.96789 0.95874 0.94454 1.19807 1.05580 0.96304 0.96012 1.17943 0.76656 0.83895 0.74649 1.93234 1.36125 1.93829 1.92731 1.93195 1.81345 1.87036 1.54291 1.93199 1.96255 1.69470 1.56246 1.20812 0.97020 0.92698 1.01515 1.17981 0.98646 0.91612 0.86171 1.91476 1.80764 1.75876 1.64164 1.17580 0.85049 0.94923 0.91991 1.91326 1.54167 1.97580 1.71478 1.20867 1.02919 0.95790 1.06032 0.89473 0.86187 0.84496 0.82340 0.80993 0.82306 0.87395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.23 10.96 21.83 0.24 -40.00 16 2 C 0.03 1.60 5.13 85.27 0.44 2.03 16 3 Si 0.99 35.22 29.60 68.60 2.03 37.25 16 4 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 5 H -0.27 -9.21 7.11 99.48 0.71 -8.50 16 6 H -0.25 -8.48 7.11 99.48 0.71 -7.77 16 7 C -0.47 -23.46 9.03 23.38 0.21 -23.25 16 8 H 0.10 4.37 7.91 -2.91 -0.02 4.35 16 9 C 0.11 5.63 5.57 -21.28 -0.12 5.51 16 10 C -0.24 -10.65 9.73 22.47 0.22 -10.43 16 11 C -0.03 -1.25 9.66 22.22 0.21 -1.04 16 12 C -0.25 -10.57 5.05 -19.83 -0.10 -10.67 16 13 C -0.01 -0.49 5.00 -19.99 -0.10 -0.59 16 14 C -0.09 -2.38 9.74 22.52 0.22 -2.16 16 15 C -0.07 -1.43 9.38 22.24 0.21 -1.22 16 16 C -0.18 -4.12 5.46 -19.80 -0.11 -4.23 16 17 C 0.52 10.92 3.36 71.24 0.24 11.16 16 18 F -0.18 -3.91 17.30 44.97 0.78 -3.14 16 19 F -0.18 -3.79 16.46 44.97 0.74 -3.05 16 20 F -0.17 -3.32 16.45 44.97 0.74 -2.58 16 21 C -0.10 -2.75 9.36 22.28 0.21 -2.54 16 22 C 0.08 2.58 7.05 22.65 0.16 2.74 16 23 F -0.14 -5.65 16.67 44.97 0.75 -4.90 16 24 C 0.12 6.06 7.00 22.33 0.16 6.22 16 25 F -0.17 -8.13 16.63 44.97 0.75 -7.38 16 26 C -0.24 -12.43 8.60 22.50 0.19 -12.23 16 27 H 0.29 13.26 8.30 -92.71 -0.77 12.49 16 28 H 0.12 4.76 8.06 -2.91 -0.02 4.74 16 29 H 0.14 4.38 8.06 -2.91 -0.02 4.36 16 30 H 0.16 3.76 8.06 -2.91 -0.02 3.74 16 31 H 0.17 2.59 7.59 -2.91 -0.02 2.57 16 32 H 0.16 3.65 7.60 -2.91 -0.02 3.62 16 33 H 0.11 6.04 6.16 -2.91 -0.02 6.03 16 Total: -1.00 -56.58 316.22 9.26 -47.32 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 1.20 Total: 17.16 kcal Atomic # 6 Polarization: -42.75 SS G_CDS: 2.04 Total: -40.71 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.24 Total: -40.00 kcal Atomic # 9 Polarization: -24.79 SS G_CDS: 3.76 Total: -21.03 kcal Atomic # 14 Polarization: 35.22 SS G_CDS: 2.03 Total: 37.25 kcal Total: -56.58 9.26 -47.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240397165.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.438 kcal (2) G-P(sol) polarization free energy of solvation -56.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds