Wall clock time and date at job start Tue Mar 31 2020 15:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30850 * 1 3 3 Si 1.86804 * 120.00046 * 2 1 4 4 H 1.48498 * 109.47308 * 275.41957 * 3 2 1 5 5 H 1.48506 * 109.46730 * 35.42001 * 3 2 1 6 6 H 1.48496 * 109.47098 * 155.41753 * 3 2 1 7 7 C 1.39922 * 120.00418 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99261 * 341.70735 * 7 2 1 9 9 C 1.41315 * 120.00192 * 161.71554 * 7 2 1 10 10 C 1.40542 * 120.20627 * 330.30460 * 9 7 2 11 11 C 1.38670 * 119.65146 * 180.23203 * 10 9 7 12 12 C 1.48373 * 119.96137 * 179.77948 * 11 10 9 13 13 C 1.39332 * 120.13511 * 129.72440 * 12 11 10 14 14 C 1.38003 * 119.90483 * 180.29912 * 13 12 11 15 15 C 1.38364 * 120.17098 * 359.41565 * 14 13 12 16 16 C 1.50695 * 119.86322 * 180.32285 * 15 14 13 17 17 F 1.39900 * 109.47317 * 270.28056 * 16 15 14 18 18 F 1.39899 * 109.47140 * 30.28520 * 16 15 14 19 19 F 1.39902 * 109.46880 * 150.28180 * 16 15 14 20 20 C 1.38255 * 120.26732 * 0.61111 * 15 14 13 21 21 C 1.38284 * 120.09781 * 359.66936 * 20 15 14 22 22 F 1.35097 * 120.08745 * 180.02562 * 21 20 15 23 23 C 1.39827 * 120.07239 * 359.49948 * 11 10 9 24 24 C 1.38229 * 120.42256 * 0.25484 * 23 11 10 25 25 C 1.38070 * 120.34658 * 0.02562 * 24 23 11 26 26 F 1.35100 * 120.04348 * 180.02562 * 25 24 23 27 27 H 0.96995 * 120.00357 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.17250 * 0.02562 * 10 9 7 29 29 H 1.07998 * 120.04814 * 0.02562 * 13 12 11 30 30 H 1.07994 * 119.91571 * 179.70564 * 14 13 12 31 31 H 1.08001 * 119.95180 * 179.69801 * 20 15 14 32 32 H 1.08005 * 119.79093 * 180.23023 * 23 11 10 33 33 H 1.07992 * 119.83011 * 180.02562 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.3755 2.1126 -1.3938 5 1 1.5018 2.6169 0.8115 6 1 3.5926 1.4098 0.5824 7 6 2.0082 -1.2117 -0.0005 8 1 1.5091 -2.1235 0.2926 9 6 3.3678 -1.2424 -0.3845 10 6 3.8616 -0.3100 -1.3130 11 6 5.1967 -0.3537 -1.6853 12 6 5.7241 0.6242 -2.6687 13 6 6.8823 1.3453 -2.3860 14 6 7.3652 2.2581 -3.3014 15 6 6.7089 2.4502 -4.5043 16 6 7.2464 3.4435 -5.5020 17 9 6.6860 4.7015 -5.2559 18 9 8.6379 3.5208 -5.3797 19 9 6.9143 3.0302 -6.7966 20 6 5.5588 1.7390 -4.7920 21 6 5.0619 0.8257 -3.8803 22 9 3.9383 0.1305 -4.1618 23 6 6.0477 -1.3144 -1.1305 24 6 5.5665 -2.2296 -0.2132 25 6 4.2390 -2.2057 0.1655 26 9 3.7753 -3.1027 1.0630 27 1 -0.4850 0.8400 0.0004 28 1 3.2038 0.4344 -1.7369 29 1 7.3989 1.1932 -1.4499 30 1 8.2602 2.8205 -3.0804 31 1 5.0479 1.8966 -5.7304 32 1 7.0876 -1.3419 -1.4209 33 1 6.2324 -2.9673 0.2096 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240397543.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:21 Heat of formation + Delta-G solvation = -204.858203 kcal Electronic energy + Delta-G solvation = -27026.983114 eV Core-core repulsion = 22237.936307 eV Total energy + Delta-G solvation = -4789.046807 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.33653 -48.72564 -47.85452 -47.79037 -47.53331 -39.43162 -37.61419 -34.03529 -32.68979 -30.91486 -30.69307 -29.10567 -25.82563 -25.40311 -23.08817 -22.57060 -21.75638 -20.27963 -18.80605 -18.65776 -18.58201 -17.73181 -16.68548 -16.33751 -16.16033 -16.03371 -15.54987 -15.07625 -14.79990 -14.66581 -14.63711 -14.30643 -14.28018 -14.12944 -13.95411 -13.87092 -13.73029 -13.32625 -12.98391 -12.84608 -12.62854 -12.31715 -12.21913 -12.04337 -11.70037 -11.60675 -11.00549 -10.98927 -10.56532 -10.17241 -9.93708 -9.34496 -9.32450 -8.90855 -8.01110 -7.58180 -7.15826 -4.69397 0.57793 1.00755 2.13096 2.31359 2.45087 2.94988 3.04419 3.14222 3.27496 3.48439 3.79486 3.80529 4.14820 4.24323 4.31092 4.65062 4.74941 4.78307 5.04003 5.12202 5.40516 5.50553 5.66614 5.76676 5.83215 5.97389 6.05585 6.11715 6.27304 6.55757 6.63033 6.85348 7.07432 7.13563 7.30038 7.42964 7.74883 8.12215 8.32424 8.51873 9.85509 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.016729 B = 0.003979 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.334893 B = 7035.981864 C = 7873.971230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.086 3.914 3 Si 0.902 3.098 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.241 1.241 7 C -0.432 4.432 8 H 0.099 0.901 9 C 0.065 3.935 10 C -0.188 4.188 11 C -0.044 4.044 12 C -0.019 4.019 13 C -0.087 4.087 14 C -0.081 4.081 15 C -0.173 4.173 16 C 0.513 3.487 17 F -0.176 7.176 18 F -0.176 7.176 19 F -0.177 7.177 20 C -0.107 4.107 21 C 0.106 3.894 22 F -0.119 7.119 23 C -0.199 4.199 24 C -0.112 4.112 25 C -0.001 4.001 26 F -0.154 7.154 27 H 0.290 0.710 28 H 0.112 0.888 29 H 0.148 0.852 30 H 0.141 0.859 31 H 0.147 0.853 32 H 0.108 0.892 33 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.851 7.164 -7.829 16.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.135 4.135 3 Si 0.727 3.273 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.164 1.164 7 C -0.460 4.460 8 H 0.117 0.883 9 C 0.061 3.939 10 C -0.208 4.208 11 C -0.044 4.044 12 C -0.020 4.020 13 C -0.105 4.105 14 C -0.099 4.099 15 C -0.175 4.175 16 C 0.459 3.541 17 F -0.157 7.157 18 F -0.158 7.158 19 F -0.158 7.158 20 C -0.126 4.126 21 C 0.087 3.913 22 F -0.097 7.097 23 C -0.219 4.219 24 C -0.131 4.131 25 C -0.021 4.021 26 F -0.133 7.133 27 H 0.100 0.900 28 H 0.129 0.871 29 H 0.165 0.835 30 H 0.159 0.841 31 H 0.164 0.836 32 H 0.126 0.874 33 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 12.486 7.217 -7.812 16.402 hybrid contribution -0.096 0.627 -0.168 0.657 sum 12.390 7.845 -7.981 16.696 Atomic orbital electron populations 1.69674 1.08081 1.30734 1.32896 1.26154 0.94799 1.01662 0.90882 0.86429 0.81671 0.79864 0.79315 1.19193 1.21019 1.16368 1.19446 0.92637 0.96673 1.37199 0.88341 1.17592 0.93366 0.91257 0.91712 1.20893 0.93864 1.03735 1.02269 1.18167 0.94039 0.95490 0.96722 1.19429 0.94158 0.95904 0.92469 1.21181 0.94829 0.94619 0.99872 1.20887 0.99535 0.97806 0.91705 1.19646 0.99603 1.01457 0.96786 1.18179 0.75500 0.80278 0.80119 1.93234 1.85042 1.43307 1.94144 1.93187 1.30250 1.96481 1.95849 1.93194 1.92231 1.90144 1.40258 1.20739 0.95818 0.95752 1.00333 1.17558 0.85593 0.94064 0.94119 1.91588 1.47834 1.76862 1.93399 1.20119 0.98101 0.99783 1.03849 1.20511 0.93736 0.99769 0.99107 1.17854 0.92156 0.95850 0.96229 1.91326 1.89633 1.66310 1.66008 0.89961 0.87080 0.83463 0.84121 0.83565 0.87384 0.87007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.44 13.93 55.55 0.77 -19.67 16 2 C 0.09 2.20 5.40 -17.34 -0.09 2.10 16 3 Si 0.90 19.94 24.51 -169.99 -4.17 15.77 16 4 H -0.27 -5.74 6.70 56.52 0.38 -5.36 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.24 -5.35 6.86 56.52 0.39 -4.96 16 7 C -0.43 -11.50 9.25 -37.78 -0.35 -11.85 16 8 H 0.10 2.79 7.97 -52.48 -0.42 2.37 16 9 C 0.06 1.59 5.11 -106.80 -0.55 1.05 16 10 C -0.19 -4.30 5.97 -38.55 -0.23 -4.53 16 11 C -0.04 -0.87 5.31 -104.97 -0.56 -1.43 16 12 C -0.02 -0.31 5.47 -104.83 -0.57 -0.88 16 13 C -0.09 -1.14 9.50 -39.26 -0.37 -1.52 16 14 C -0.08 -0.92 9.38 -39.62 -0.37 -1.29 16 15 C -0.17 -2.11 5.46 -104.57 -0.57 -2.68 16 16 C 0.51 5.76 3.36 36.00 0.12 5.88 16 17 F -0.18 -2.07 17.30 2.25 0.04 -2.03 16 18 F -0.18 -1.89 16.46 2.25 0.04 -1.85 16 19 F -0.18 -2.02 16.45 2.25 0.04 -1.98 16 20 C -0.11 -1.44 9.36 -39.56 -0.37 -1.81 16 21 C 0.11 1.74 7.15 -39.08 -0.28 1.46 16 22 F -0.12 -2.20 15.91 2.25 0.04 -2.16 16 23 C -0.20 -3.67 9.51 -38.99 -0.37 -4.04 16 24 C -0.11 -2.21 9.99 -39.65 -0.40 -2.61 16 25 C 0.00 -0.02 7.31 -38.58 -0.28 -0.30 16 26 F -0.15 -3.63 16.76 2.25 0.04 -3.59 16 27 H 0.29 6.73 8.30 -40.82 -0.34 6.39 16 28 H 0.11 2.59 4.44 -52.49 -0.23 2.36 16 29 H 0.15 1.65 8.04 -52.49 -0.42 1.23 16 30 H 0.14 1.21 7.60 -52.49 -0.40 0.81 16 31 H 0.15 1.69 7.59 -52.49 -0.40 1.29 16 32 H 0.11 1.65 8.03 -52.48 -0.42 1.23 16 33 H 0.11 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 309.56 15.07 4.67 4.67 Total: -1.00 -26.41 309.56 -5.67 -32.08 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -1.89 Total: 1.23 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: -5.24 Total: -22.46 kcal Atomic # 7 Polarization: -20.44 SS G_CDS: 0.77 Total: -19.67 kcal Atomic # 9 Polarization: -11.80 SS G_CDS: 0.19 Total: -11.61 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.17 Total: 15.77 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -26.41 -5.67 -32.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240397543.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.780 kcal (2) G-P(sol) polarization free energy of solvation -26.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds