Wall clock time and date at job start Tue Mar 31 2020 15:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30850 * 1 3 3 Si 1.86804 * 120.00046 * 2 1 4 4 H 1.48498 * 109.47308 * 275.41957 * 3 2 1 5 5 H 1.48506 * 109.46730 * 35.42001 * 3 2 1 6 6 H 1.48496 * 109.47098 * 155.41753 * 3 2 1 7 7 C 1.39922 * 120.00418 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99261 * 341.70735 * 7 2 1 9 9 C 1.41315 * 120.00192 * 161.71554 * 7 2 1 10 10 C 1.40542 * 120.20627 * 330.30460 * 9 7 2 11 11 C 1.38670 * 119.65146 * 180.23203 * 10 9 7 12 12 C 1.48373 * 119.96137 * 179.77948 * 11 10 9 13 13 C 1.39332 * 120.13511 * 129.72440 * 12 11 10 14 14 C 1.38003 * 119.90483 * 180.29912 * 13 12 11 15 15 C 1.38364 * 120.17098 * 359.41565 * 14 13 12 16 16 C 1.50695 * 119.86322 * 180.32285 * 15 14 13 17 17 F 1.39900 * 109.47317 * 270.28056 * 16 15 14 18 18 F 1.39899 * 109.47140 * 30.28520 * 16 15 14 19 19 F 1.39902 * 109.46880 * 150.28180 * 16 15 14 20 20 C 1.38255 * 120.26732 * 0.61111 * 15 14 13 21 21 C 1.38284 * 120.09781 * 359.66936 * 20 15 14 22 22 F 1.35097 * 120.08745 * 180.02562 * 21 20 15 23 23 C 1.39827 * 120.07239 * 359.49948 * 11 10 9 24 24 C 1.38229 * 120.42256 * 0.25484 * 23 11 10 25 25 C 1.38070 * 120.34658 * 0.02562 * 24 23 11 26 26 F 1.35100 * 120.04348 * 180.02562 * 25 24 23 27 27 H 0.96995 * 120.00357 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.17250 * 0.02562 * 10 9 7 29 29 H 1.07998 * 120.04814 * 0.02562 * 13 12 11 30 30 H 1.07994 * 119.91571 * 179.70564 * 14 13 12 31 31 H 1.08001 * 119.95180 * 179.69801 * 20 15 14 32 32 H 1.08005 * 119.79093 * 180.23023 * 23 11 10 33 33 H 1.07992 * 119.83011 * 180.02562 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.3755 2.1126 -1.3938 5 1 1.5018 2.6169 0.8115 6 1 3.5926 1.4098 0.5824 7 6 2.0082 -1.2117 -0.0005 8 1 1.5091 -2.1235 0.2926 9 6 3.3678 -1.2424 -0.3845 10 6 3.8616 -0.3100 -1.3130 11 6 5.1967 -0.3537 -1.6853 12 6 5.7241 0.6242 -2.6687 13 6 6.8823 1.3453 -2.3860 14 6 7.3652 2.2581 -3.3014 15 6 6.7089 2.4502 -4.5043 16 6 7.2464 3.4435 -5.5020 17 9 6.6860 4.7015 -5.2559 18 9 8.6379 3.5208 -5.3797 19 9 6.9143 3.0302 -6.7966 20 6 5.5588 1.7390 -4.7920 21 6 5.0619 0.8257 -3.8803 22 9 3.9383 0.1305 -4.1618 23 6 6.0477 -1.3144 -1.1305 24 6 5.5665 -2.2296 -0.2132 25 6 4.2390 -2.2057 0.1655 26 9 3.7753 -3.1027 1.0630 27 1 -0.4850 0.8400 0.0004 28 1 3.2038 0.4344 -1.7369 29 1 7.3989 1.1932 -1.4499 30 1 8.2602 2.8205 -3.0804 31 1 5.0479 1.8966 -5.7304 32 1 7.0876 -1.3419 -1.4209 33 1 6.2324 -2.9673 0.2096 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240397543.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:20 Heat of formation + Delta-G solvation = -217.015408 kcal Electronic energy + Delta-G solvation = -27027.510290 eV Core-core repulsion = 22237.936307 eV Total energy + Delta-G solvation = -4789.573983 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -51.21053 -50.02253 -49.36036 -48.71650 -48.67175 -40.62158 -39.16488 -35.80347 -34.01462 -32.51667 -31.87940 -30.49690 -27.30194 -26.84508 -24.28845 -23.80108 -23.26592 -21.79459 -19.81001 -19.55116 -19.52178 -19.43540 -18.40827 -17.60843 -17.44149 -17.27462 -16.96555 -16.64828 -16.42982 -16.13161 -15.59680 -15.53737 -15.30928 -15.18053 -15.06518 -14.85730 -14.81737 -14.73098 -14.49854 -14.18207 -13.99505 -13.89950 -13.70501 -13.33160 -13.12431 -13.03169 -12.74797 -12.35140 -12.14790 -11.93704 -11.70007 -11.12274 -10.51565 -10.01947 -9.74695 -9.19607 -9.02518 -6.63967 -0.55768 -0.03029 0.51859 0.61076 1.16362 1.28387 1.38069 1.53436 2.00396 2.15301 2.43734 2.56038 2.88353 3.15701 3.27022 3.35456 3.46198 3.66819 3.80435 3.86500 4.05316 4.11650 4.38084 4.50354 4.58385 4.66723 4.80160 4.88427 4.93155 5.05885 5.16057 5.35978 5.48130 5.53408 5.64380 5.70488 5.96823 6.18548 6.49942 6.62269 8.06029 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.016729 B = 0.003979 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.334893 B = 7035.981864 C = 7873.971230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.051 3.949 3 Si 0.954 3.046 4 H -0.260 1.260 5 H -0.268 1.268 6 H -0.242 1.242 7 C -0.481 4.481 8 H 0.055 0.945 9 C 0.046 3.954 10 C -0.199 4.199 11 C -0.040 4.040 12 C -0.048 4.048 13 C -0.075 4.075 14 C -0.065 4.065 15 C -0.167 4.167 16 C 0.521 3.479 17 F -0.178 7.178 18 F -0.169 7.169 19 F -0.178 7.178 20 C -0.104 4.104 21 C 0.080 3.920 22 F -0.142 7.142 23 C -0.168 4.168 24 C -0.105 4.105 25 C -0.029 4.029 26 F -0.165 7.165 27 H 0.297 0.703 28 H 0.100 0.900 29 H 0.174 0.826 30 H 0.179 0.821 31 H 0.159 0.841 32 H 0.158 0.842 33 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.661 9.144 -8.931 21.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.165 4.165 3 Si 0.776 3.224 4 H -0.185 1.185 5 H -0.194 1.194 6 H -0.165 1.165 7 C -0.510 4.510 8 H 0.073 0.927 9 C 0.043 3.957 10 C -0.219 4.219 11 C -0.041 4.041 12 C -0.049 4.049 13 C -0.092 4.092 14 C -0.082 4.082 15 C -0.169 4.169 16 C 0.467 3.533 17 F -0.159 7.159 18 F -0.150 7.150 19 F -0.159 7.159 20 C -0.123 4.123 21 C 0.061 3.939 22 F -0.121 7.121 23 C -0.187 4.187 24 C -0.124 4.124 25 C -0.050 4.050 26 F -0.144 7.144 27 H 0.108 0.892 28 H 0.118 0.882 29 H 0.192 0.808 30 H 0.196 0.804 31 H 0.177 0.823 32 H 0.175 0.825 33 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 17.307 9.190 -8.918 21.529 hybrid contribution -1.252 -0.033 0.015 1.252 sum 16.055 9.156 -8.903 20.515 Atomic orbital electron populations 1.69707 1.09167 1.31799 1.35721 1.26800 0.95400 1.04020 0.90239 0.85649 0.80486 0.76644 0.79650 1.18549 1.19427 1.16456 1.19329 0.94348 0.95947 1.41385 0.92691 1.17758 0.92889 0.92704 0.92381 1.20911 0.95571 1.03306 1.02087 1.18508 0.92859 0.96181 0.96509 1.19382 0.96222 0.97159 0.92092 1.21447 0.93143 0.93623 1.00999 1.21287 0.99959 0.96619 0.90374 1.19859 0.98862 1.00767 0.97380 1.17977 0.75698 0.79869 0.79786 1.93241 1.85144 1.43374 1.94139 1.93208 1.29607 1.96420 1.95792 1.93201 1.92276 1.90140 1.40327 1.20856 0.96217 0.94943 1.00305 1.17872 0.85496 0.95303 0.95277 1.91530 1.49257 1.77645 1.93654 1.20765 1.00045 0.96997 1.00885 1.20958 0.92368 1.00418 0.98612 1.18300 0.93731 0.95948 0.96974 1.91290 1.90033 1.66610 1.66482 0.89210 0.88221 0.80830 0.80413 0.82299 0.82480 0.83325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.47 13.93 21.82 0.30 -46.17 16 2 C 0.05 2.79 5.40 85.25 0.46 3.25 16 3 Si 0.95 42.23 24.51 68.60 1.68 43.91 16 4 H -0.26 -11.08 6.70 99.48 0.67 -10.41 16 5 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 6 H -0.24 -10.53 6.86 99.48 0.68 -9.84 16 7 C -0.48 -27.73 9.25 23.44 0.22 -27.52 16 8 H 0.05 3.48 7.97 -2.91 -0.02 3.46 16 9 C 0.05 2.35 5.11 -21.27 -0.11 2.24 16 10 C -0.20 -9.15 5.97 22.94 0.14 -9.01 16 11 C -0.04 -1.49 5.31 -20.09 -0.11 -1.60 16 12 C -0.05 -1.43 5.47 -20.00 -0.11 -1.54 16 13 C -0.07 -1.55 9.50 22.48 0.21 -1.33 16 14 C -0.06 -1.09 9.38 22.24 0.21 -0.89 16 15 C -0.17 -3.34 5.46 -19.83 -0.11 -3.44 16 16 C 0.52 9.52 3.36 71.23 0.24 9.76 16 17 F -0.18 -3.51 17.30 44.97 0.78 -2.73 16 18 F -0.17 -2.82 16.46 44.97 0.74 -2.08 16 19 F -0.18 -3.46 16.45 44.97 0.74 -2.72 16 20 C -0.10 -2.51 9.36 22.28 0.21 -2.30 16 21 C 0.08 2.46 7.15 22.59 0.16 2.62 16 22 F -0.14 -5.30 15.91 44.97 0.72 -4.59 16 23 C -0.17 -5.45 9.51 22.65 0.22 -5.23 16 24 C -0.10 -3.83 9.99 22.23 0.22 -3.60 16 25 C -0.03 -1.38 7.31 22.92 0.17 -1.21 16 26 F -0.17 -8.08 16.76 44.97 0.75 -7.32 16 27 H 0.30 14.68 8.30 -92.71 -0.77 13.91 16 28 H 0.10 4.76 4.44 -2.91 -0.01 4.74 16 29 H 0.17 2.69 8.04 -2.91 -0.02 2.67 16 30 H 0.18 1.77 7.60 -2.91 -0.02 1.75 16 31 H 0.16 3.31 7.59 -2.91 -0.02 3.29 16 32 H 0.16 3.66 8.03 -2.91 -0.02 3.63 16 33 H 0.15 4.33 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -63.19 309.56 8.87 -54.32 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: 1.14 Total: 7.19 kcal Atomic # 6 Polarization: -41.83 SS G_CDS: 2.02 Total: -39.81 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: 0.30 Total: -46.17 kcal Atomic # 9 Polarization: -23.17 SS G_CDS: 3.73 Total: -19.44 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 1.68 Total: 43.91 kcal Total: -63.19 8.87 -54.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240397543.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.695 kcal (2) G-P(sol) polarization free energy of solvation -63.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds