Wall clock time and date at job start Tue Mar 31 2020 15:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30787 * 1 3 3 Si 1.86802 * 120.00305 * 2 1 4 4 H 1.48499 * 109.46941 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47034 * 300.00000 * 3 2 1 6 6 H 1.48504 * 109.46869 * 59.99986 * 3 2 1 7 7 C 1.40051 * 119.99738 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00038 * 195.28539 * 7 2 1 9 9 C 1.40872 * 120.00042 * 15.28814 * 7 2 1 10 10 C 1.40725 * 120.31581 * 25.47618 * 9 7 2 11 11 C 1.37633 * 119.84692 * 180.27637 * 10 9 7 12 12 F 1.35099 * 119.74938 * 179.72441 * 11 10 9 13 13 C 1.39195 * 120.50223 * 359.74230 * 11 10 9 14 14 C 1.37996 * 120.65810 * 359.97438 * 13 11 10 15 15 C 1.39166 * 120.12985 * 0.02562 * 14 13 11 16 16 C 1.47809 * 120.25345 * 179.97438 * 15 14 13 17 17 C 1.39673 * 120.16541 * 64.99676 * 16 15 14 18 18 C 1.37883 * 119.87139 * 180.02562 * 17 16 15 19 19 C 1.38463 * 120.20912 * 0.24847 * 18 17 16 20 20 C 1.50694 * 119.83238 * 179.72232 * 19 18 17 21 21 F 1.39907 * 109.46870 * 90.00152 * 20 19 18 22 22 F 1.39894 * 109.47385 * 210.00321 * 20 19 18 23 23 F 1.39902 * 109.47294 * 330.00586 * 20 19 18 24 24 C 1.38305 * 120.33313 * 359.49403 * 19 18 17 25 25 C 1.38213 * 120.12414 * 0.51111 * 24 19 18 26 26 F 1.35100 * 120.10298 * 179.72376 * 25 24 19 27 27 H 0.97004 * 119.99521 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.07733 * 0.02562 * 10 9 7 29 29 H 1.08005 * 119.66992 * 179.97438 * 13 11 10 30 30 H 1.08006 * 119.93432 * 179.97438 * 14 13 11 31 31 H 1.07993 * 120.06605 * 0.04647 * 17 16 15 32 32 H 1.07997 * 119.89922 * 179.97438 * 18 17 16 33 33 H 1.08001 * 119.93903 * 180.27308 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 3.7019 1.3462 0.0006 5 1 1.8832 2.3964 -1.2125 6 1 1.8832 2.3964 1.2125 7 6 2.0081 -1.2129 0.0005 8 1 3.0594 -1.2294 0.2471 9 6 1.3411 -2.4114 -0.3206 10 6 0.1911 -2.3891 -1.1314 11 6 -0.4563 -3.5652 -1.4345 12 9 -1.5633 -3.5409 -2.2085 13 6 0.0206 -4.7796 -0.9493 14 6 1.1497 -4.8262 -0.1573 15 6 1.8253 -3.6532 0.1658 16 6 3.0347 -3.6999 1.0144 17 6 4.1880 -4.3420 0.5579 18 6 5.3126 -4.3825 1.3547 19 6 5.3002 -3.7931 2.6076 20 6 6.5320 -3.8478 3.4740 21 9 7.3351 -2.7322 3.2135 22 9 6.1551 -3.8468 4.8212 23 9 7.2495 -5.0151 3.1913 24 6 4.1646 -3.1505 3.0660 25 6 3.0296 -3.1018 2.2788 26 9 1.9187 -2.4787 2.7293 27 1 -0.4850 0.8401 0.0004 28 1 -0.1849 -1.4508 -1.5117 29 1 -0.4982 -5.6944 -1.1951 30 1 1.5093 -5.7748 0.2133 31 1 4.1991 -4.8057 -0.4174 32 1 6.2044 -4.8792 1.0024 33 1 4.1634 -2.6891 4.0425 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240398026.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:28 Heat of formation + Delta-G solvation = -207.524837 kcal Electronic energy + Delta-G solvation = -27293.717229 eV Core-core repulsion = 22504.554788 eV Total energy + Delta-G solvation = -4789.162441 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.10921 -48.16743 -47.78553 -47.63389 -47.56194 -39.01352 -37.31459 -33.97115 -32.38078 -30.49011 -29.93790 -28.76748 -26.12044 -25.06670 -22.68296 -22.14700 -21.39397 -20.20853 -18.47676 -18.42017 -18.33735 -17.78660 -16.22021 -16.01772 -15.86301 -15.68052 -15.14384 -14.91785 -14.57876 -14.46567 -14.43886 -14.41111 -14.05091 -13.85964 -13.73975 -13.65137 -13.52340 -13.08044 -12.78414 -12.52554 -12.38815 -12.03321 -11.90200 -11.73566 -11.53267 -11.28197 -10.92546 -10.80700 -10.52892 -10.19118 -9.88670 -9.44902 -8.86386 -8.39905 -7.79721 -7.43823 -7.02862 -4.71412 1.04596 1.43241 2.40452 2.59787 2.72004 2.94382 2.98977 3.01259 3.64865 3.73126 3.77181 4.08111 4.29081 4.50042 4.74289 4.98860 5.09990 5.29505 5.31609 5.50751 5.53391 5.80844 6.02868 6.16759 6.18841 6.30652 6.39685 6.59343 6.72752 6.76617 6.95759 7.07127 7.26366 7.44130 7.54020 7.66571 7.93094 8.26589 8.51995 8.56143 9.86223 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.013076 B = 0.004621 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.769285 B = 6058.114048 C = 7507.405597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.077 3.923 3 Si 0.908 3.092 4 H -0.256 1.256 5 H -0.268 1.268 6 H -0.270 1.270 7 C -0.436 4.436 8 H 0.084 0.916 9 C 0.154 3.846 10 C -0.195 4.195 11 C 0.113 3.887 12 F -0.165 7.165 13 C -0.280 4.280 14 C -0.035 4.035 15 C -0.216 4.216 16 C 0.027 3.973 17 C -0.101 4.101 18 C -0.085 4.085 19 C -0.184 4.184 20 C 0.513 3.487 21 F -0.178 7.178 22 F -0.180 7.180 23 F -0.179 7.179 24 C -0.115 4.115 25 C 0.116 3.884 26 F -0.115 7.115 27 H 0.287 0.713 28 H 0.134 0.866 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.139 0.861 32 H 0.133 0.867 33 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.917 -4.462 3.717 10.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.144 4.144 3 Si 0.732 3.268 4 H -0.179 1.179 5 H -0.193 1.193 6 H -0.195 1.195 7 C -0.463 4.463 8 H 0.102 0.898 9 C 0.150 3.850 10 C -0.215 4.215 11 C 0.094 3.906 12 F -0.144 7.144 13 C -0.300 4.300 14 C -0.053 4.053 15 C -0.217 4.217 16 C 0.026 3.974 17 C -0.119 4.119 18 C -0.103 4.103 19 C -0.186 4.186 20 C 0.459 3.541 21 F -0.160 7.160 22 F -0.161 7.161 23 F -0.161 7.161 24 C -0.134 4.134 25 C 0.096 3.904 26 F -0.094 7.094 27 H 0.098 0.902 28 H 0.152 0.848 29 H 0.121 0.879 30 H 0.120 0.880 31 H 0.157 0.843 32 H 0.151 0.849 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 8.647 -4.263 3.751 10.344 hybrid contribution 0.063 0.929 0.200 0.952 sum 8.710 -3.334 3.951 10.129 Atomic orbital electron populations 1.69778 1.07774 1.30035 1.31902 1.26019 0.94800 1.01813 0.91787 0.86221 0.81184 0.80383 0.79026 1.17934 1.19265 1.19483 1.19587 0.97425 0.90628 1.38691 0.89836 1.17185 0.89626 0.90989 0.87169 1.21294 1.00218 0.96111 1.03851 1.17786 0.84205 0.95251 0.93351 1.91347 1.51838 1.97614 1.73630 1.20171 1.03046 0.95377 1.11366 1.20302 0.93883 0.95722 0.95381 1.18328 0.99937 0.94351 1.09130 1.19095 0.94594 0.92629 0.91126 1.21227 0.90876 0.99827 0.99956 1.20769 0.99253 0.98157 0.92123 1.19526 0.93257 1.08614 0.97188 1.18255 0.83819 0.73540 0.78476 1.93221 1.75735 1.53189 1.93835 1.93173 1.91277 1.96194 1.35460 1.93168 1.80196 1.49320 1.93397 1.20676 0.91462 1.00462 1.00850 1.17687 0.83403 0.96421 0.92852 1.91573 1.49843 1.79462 1.88475 0.90166 0.84838 0.87863 0.88004 0.84283 0.84877 0.84304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.64 10.87 55.55 0.60 -18.04 16 2 C 0.08 1.79 5.19 -17.32 -0.09 1.70 16 3 Si 0.91 17.57 29.59 -169.99 -5.03 12.54 16 4 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 5 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 6 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 7 C -0.44 -10.47 7.47 -37.91 -0.28 -10.76 16 8 H 0.08 1.97 7.06 -52.49 -0.37 1.60 16 9 C 0.15 3.72 5.46 -106.57 -0.58 3.14 16 10 C -0.19 -4.81 8.64 -38.86 -0.34 -5.15 16 11 C 0.11 2.64 7.28 -39.45 -0.29 2.35 16 12 F -0.17 -3.74 17.26 2.25 0.04 -3.71 16 13 C -0.28 -5.92 10.01 -39.31 -0.39 -6.32 16 14 C -0.03 -0.70 9.71 -39.33 -0.38 -1.08 16 15 C -0.22 -4.67 5.06 -104.24 -0.53 -5.20 16 16 C 0.03 0.50 4.38 -104.83 -0.46 0.04 16 17 C -0.10 -1.56 9.75 -39.18 -0.38 -1.94 16 18 C -0.08 -1.16 9.38 -39.63 -0.37 -1.53 16 19 C -0.18 -2.67 5.46 -104.52 -0.57 -3.24 16 20 C 0.51 6.79 3.36 36.00 0.12 6.91 16 21 F -0.18 -2.44 17.30 2.25 0.04 -2.40 16 22 F -0.18 -2.38 16.45 2.25 0.04 -2.35 16 23 F -0.18 -2.25 16.45 2.25 0.04 -2.22 16 24 C -0.12 -1.84 9.36 -39.57 -0.37 -2.21 16 25 C 0.12 2.19 6.48 -38.98 -0.25 1.94 16 26 F -0.12 -2.48 16.13 2.25 0.04 -2.44 16 27 H 0.29 6.27 8.30 -40.82 -0.34 5.94 16 28 H 0.13 3.43 6.13 -52.49 -0.32 3.11 16 29 H 0.10 1.96 8.06 -52.48 -0.42 1.53 16 30 H 0.10 1.76 8.06 -52.48 -0.42 1.33 16 31 H 0.14 1.90 8.06 -52.49 -0.42 1.48 16 32 H 0.13 1.47 7.59 -52.49 -0.40 1.07 16 33 H 0.14 1.96 7.60 -52.49 -0.40 1.56 16 LS Contribution 313.20 15.07 4.72 4.72 Total: -1.00 -25.01 313.20 -6.58 -31.59 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -1.89 Total: 3.64 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: -5.17 Total: -21.34 kcal Atomic # 7 Polarization: -18.64 SS G_CDS: 0.60 Total: -18.04 kcal Atomic # 9 Polarization: -13.30 SS G_CDS: 0.19 Total: -13.11 kcal Atomic # 14 Polarization: 17.57 SS G_CDS: -5.03 Total: 12.54 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -25.01 -6.58 -31.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240398026.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.936 kcal (2) G-P(sol) polarization free energy of solvation -25.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds