Wall clock time and date at job start Tue Mar 31 2020 15:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30787 * 1 3 3 Si 1.86802 * 120.00305 * 2 1 4 4 H 1.48499 * 109.46941 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47034 * 300.00000 * 3 2 1 6 6 H 1.48504 * 109.46869 * 59.99986 * 3 2 1 7 7 C 1.40051 * 119.99738 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00038 * 195.28539 * 7 2 1 9 9 C 1.40872 * 120.00042 * 15.28814 * 7 2 1 10 10 C 1.40725 * 120.31581 * 25.47618 * 9 7 2 11 11 C 1.37633 * 119.84692 * 180.27637 * 10 9 7 12 12 F 1.35099 * 119.74938 * 179.72441 * 11 10 9 13 13 C 1.39195 * 120.50223 * 359.74230 * 11 10 9 14 14 C 1.37996 * 120.65810 * 359.97438 * 13 11 10 15 15 C 1.39166 * 120.12985 * 0.02562 * 14 13 11 16 16 C 1.47809 * 120.25345 * 179.97438 * 15 14 13 17 17 C 1.39673 * 120.16541 * 64.99676 * 16 15 14 18 18 C 1.37883 * 119.87139 * 180.02562 * 17 16 15 19 19 C 1.38463 * 120.20912 * 0.24847 * 18 17 16 20 20 C 1.50694 * 119.83238 * 179.72232 * 19 18 17 21 21 F 1.39907 * 109.46870 * 90.00152 * 20 19 18 22 22 F 1.39894 * 109.47385 * 210.00321 * 20 19 18 23 23 F 1.39902 * 109.47294 * 330.00586 * 20 19 18 24 24 C 1.38305 * 120.33313 * 359.49403 * 19 18 17 25 25 C 1.38213 * 120.12414 * 0.51111 * 24 19 18 26 26 F 1.35100 * 120.10298 * 179.72376 * 25 24 19 27 27 H 0.97004 * 119.99521 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.07733 * 0.02562 * 10 9 7 29 29 H 1.08005 * 119.66992 * 179.97438 * 13 11 10 30 30 H 1.08006 * 119.93432 * 179.97438 * 14 13 11 31 31 H 1.07993 * 120.06605 * 0.04647 * 17 16 15 32 32 H 1.07997 * 119.89922 * 179.97438 * 18 17 16 33 33 H 1.08001 * 119.93903 * 180.27308 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 3.7019 1.3462 0.0006 5 1 1.8832 2.3964 -1.2125 6 1 1.8832 2.3964 1.2125 7 6 2.0081 -1.2129 0.0005 8 1 3.0594 -1.2294 0.2471 9 6 1.3411 -2.4114 -0.3206 10 6 0.1911 -2.3891 -1.1314 11 6 -0.4563 -3.5652 -1.4345 12 9 -1.5633 -3.5409 -2.2085 13 6 0.0206 -4.7796 -0.9493 14 6 1.1497 -4.8262 -0.1573 15 6 1.8253 -3.6532 0.1658 16 6 3.0347 -3.6999 1.0144 17 6 4.1880 -4.3420 0.5579 18 6 5.3126 -4.3825 1.3547 19 6 5.3002 -3.7931 2.6076 20 6 6.5320 -3.8478 3.4740 21 9 7.3351 -2.7322 3.2135 22 9 6.1551 -3.8468 4.8212 23 9 7.2495 -5.0151 3.1913 24 6 4.1646 -3.1505 3.0660 25 6 3.0296 -3.1018 2.2788 26 9 1.9187 -2.4787 2.7293 27 1 -0.4850 0.8401 0.0004 28 1 -0.1849 -1.4508 -1.5117 29 1 -0.4982 -5.6944 -1.1951 30 1 1.5093 -5.7748 0.2133 31 1 4.1991 -4.8057 -0.4174 32 1 6.2044 -4.8792 1.0024 33 1 4.1634 -2.6891 4.0425 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240398026.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:27 Heat of formation + Delta-G solvation = -216.322916 kcal Electronic energy + Delta-G solvation = -27294.098742 eV Core-core repulsion = 22504.554788 eV Total energy + Delta-G solvation = -4789.543955 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.15748 -49.68631 -49.59675 -48.66606 -48.61719 -40.38566 -38.90433 -35.69072 -33.78886 -31.87684 -31.53738 -30.29752 -27.71035 -26.48237 -23.98007 -23.52346 -23.07827 -21.75877 -19.66739 -19.52959 -19.47908 -19.40159 -17.90701 -17.49779 -17.23955 -17.04172 -16.78598 -16.52513 -16.24958 -16.21647 -15.56172 -15.47079 -15.14170 -15.06925 -14.93664 -14.77496 -14.72362 -14.63422 -14.36738 -14.07721 -13.91267 -13.50196 -13.30546 -13.16446 -13.02814 -12.85762 -12.41358 -12.37006 -12.11627 -11.80596 -11.56757 -11.16498 -10.16311 -9.75920 -9.55157 -9.14918 -8.74015 -6.50265 -0.24557 0.17294 0.70032 0.88884 1.34149 1.43597 1.48340 1.62268 2.12365 2.35950 2.57777 2.65829 2.99381 3.40350 3.43585 3.51795 3.75147 3.83238 3.90272 4.03537 4.26717 4.41264 4.53122 4.59470 4.91604 4.96382 5.01547 5.02957 5.13566 5.21114 5.36156 5.56042 5.64267 5.73724 5.85285 5.92744 6.18154 6.49297 6.76071 6.80567 8.17746 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.013076 B = 0.004621 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.769285 B = 6058.114048 C = 7507.405597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.039 3.961 3 Si 0.971 3.029 4 H -0.253 1.253 5 H -0.261 1.261 6 H -0.267 1.267 7 C -0.457 4.457 8 H 0.081 0.919 9 C 0.128 3.872 10 C -0.224 4.224 11 C 0.098 3.902 12 F -0.167 7.167 13 C -0.277 4.277 14 C -0.034 4.034 15 C -0.210 4.210 16 C -0.001 4.001 17 C -0.092 4.092 18 C -0.069 4.069 19 C -0.179 4.179 20 C 0.522 3.478 21 F -0.179 7.179 22 F -0.179 7.179 23 F -0.171 7.171 24 C -0.111 4.111 25 C 0.088 3.912 26 F -0.141 7.141 27 H 0.292 0.708 28 H 0.112 0.888 29 H 0.129 0.871 30 H 0.139 0.861 31 H 0.160 0.840 32 H 0.170 0.830 33 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.496 -5.889 4.213 13.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.179 4.179 3 Si 0.791 3.209 4 H -0.176 1.176 5 H -0.186 1.186 6 H -0.191 1.191 7 C -0.485 4.485 8 H 0.099 0.901 9 C 0.125 3.875 10 C -0.245 4.245 11 C 0.078 3.922 12 F -0.146 7.146 13 C -0.296 4.296 14 C -0.052 4.052 15 C -0.212 4.212 16 C -0.002 4.002 17 C -0.110 4.110 18 C -0.087 4.087 19 C -0.180 4.180 20 C 0.468 3.532 21 F -0.160 7.160 22 F -0.160 7.160 23 F -0.152 7.152 24 C -0.130 4.130 25 C 0.069 3.931 26 F -0.120 7.120 27 H 0.103 0.897 28 H 0.130 0.870 29 H 0.147 0.853 30 H 0.157 0.843 31 H 0.178 0.822 32 H 0.188 0.812 33 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 11.229 -5.706 4.246 13.292 hybrid contribution -0.655 1.205 0.095 1.375 sum 10.574 -4.501 4.340 12.284 Atomic orbital electron populations 1.69840 1.09133 1.30997 1.33453 1.26788 0.95378 1.04676 0.91044 0.85300 0.79879 0.76516 0.79162 1.17607 1.18559 1.19143 1.19671 0.97343 0.91385 1.40073 0.90096 1.17507 0.89896 0.92510 0.87581 1.21230 1.01686 0.95929 1.05621 1.18030 0.84368 0.95867 0.93891 1.91330 1.51882 1.97665 1.73701 1.20514 1.03191 0.95333 1.10596 1.20711 0.93115 0.96884 0.94531 1.18673 1.00636 0.93814 1.08045 1.19126 0.94983 0.94933 0.91125 1.21423 0.90020 0.98661 1.00880 1.21143 0.99709 0.96679 0.91134 1.19749 0.93158 1.07452 0.97686 1.17979 0.83258 0.73737 0.78211 1.93229 1.75642 1.53338 1.93838 1.93184 1.91278 1.96197 1.35379 1.93192 1.79896 1.48797 1.93324 1.20790 0.90918 1.00241 1.01075 1.17966 0.83715 0.97644 0.93825 1.91504 1.51342 1.80286 1.88840 0.89710 0.87000 0.85266 0.84314 0.82232 0.81218 0.82994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.08 10.87 21.85 0.24 -40.84 16 2 C 0.04 1.86 5.19 85.29 0.44 2.30 16 3 Si 0.97 36.74 29.59 68.60 2.03 38.77 16 4 H -0.25 -9.30 7.11 99.48 0.71 -8.60 16 5 H -0.26 -9.48 7.11 99.48 0.71 -8.78 16 6 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 7 C -0.46 -22.68 7.47 23.35 0.17 -22.51 16 8 H 0.08 3.91 7.06 -2.91 -0.02 3.89 16 9 C 0.13 6.40 5.46 -21.12 -0.12 6.28 16 10 C -0.22 -11.59 8.64 22.73 0.20 -11.39 16 11 C 0.10 4.64 7.28 22.36 0.16 4.80 16 12 F -0.17 -7.72 17.26 44.97 0.78 -6.94 16 13 C -0.28 -11.43 10.01 22.44 0.22 -11.20 16 14 C -0.03 -1.34 9.71 22.44 0.22 -1.12 16 15 C -0.21 -9.04 5.06 -19.62 -0.10 -9.14 16 16 C 0.00 -0.03 4.38 -20.00 -0.09 -0.12 16 17 C -0.09 -2.56 9.75 22.53 0.22 -2.34 16 18 C -0.07 -1.60 9.38 22.24 0.21 -1.39 16 19 C -0.18 -4.59 5.46 -19.80 -0.11 -4.70 16 20 C 0.52 11.98 3.36 71.23 0.24 12.22 16 21 F -0.18 -4.32 17.30 44.97 0.78 -3.54 16 22 F -0.18 -4.22 16.45 44.97 0.74 -3.48 16 23 F -0.17 -3.58 16.45 44.97 0.74 -2.84 16 24 C -0.11 -3.35 9.36 22.28 0.21 -3.14 16 25 C 0.09 3.28 6.48 22.66 0.15 3.43 16 26 F -0.14 -6.24 16.13 44.97 0.73 -5.52 16 27 H 0.29 13.41 8.30 -92.71 -0.77 12.64 16 28 H 0.11 6.15 6.13 -2.91 -0.02 6.13 16 29 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 30 H 0.14 4.31 8.06 -2.91 -0.02 4.29 16 31 H 0.16 3.76 8.06 -2.91 -0.02 3.73 16 32 H 0.17 2.77 7.59 -2.91 -0.02 2.75 16 33 H 0.15 4.06 7.60 -2.91 -0.02 4.04 16 Total: -1.00 -56.15 313.20 9.26 -46.90 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: 1.20 Total: 15.53 kcal Atomic # 6 Polarization: -40.07 SS G_CDS: 2.03 Total: -38.04 kcal Atomic # 7 Polarization: -41.08 SS G_CDS: 0.24 Total: -40.84 kcal Atomic # 9 Polarization: -26.08 SS G_CDS: 3.76 Total: -22.32 kcal Atomic # 14 Polarization: 36.74 SS G_CDS: 2.03 Total: 38.77 kcal Total: -56.15 9.26 -46.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240398026.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.424 kcal (2) G-P(sol) polarization free energy of solvation -56.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds