Wall clock time and date at job start Tue Mar 31 2020 15:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86802 * 120.00087 * 2 1 4 4 H 1.48499 * 109.46938 * 239.99952 * 3 2 1 5 5 H 1.48501 * 109.46833 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47210 * 120.00059 * 3 2 1 7 7 C 1.39928 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00087 * 197.89834 * 7 2 1 9 9 C 1.41421 * 119.99900 * 17.89949 * 7 2 1 10 10 C 1.40754 * 120.17203 * 24.51795 * 9 7 2 11 11 C 1.37904 * 119.96710 * 179.97438 * 10 9 7 12 12 F 1.35098 * 119.83368 * 179.72301 * 11 10 9 13 13 C 1.38663 * 120.32869 * 0.02562 * 11 10 9 14 14 C 1.39665 * 120.35213 * 359.97438 * 13 11 10 15 15 C 1.48380 * 119.98857 * 179.97438 * 14 13 11 16 16 C 1.39325 * 120.13456 * 129.74331 * 15 14 13 17 17 C 1.38003 * 119.90663 * 179.76490 * 16 15 14 18 18 C 1.38356 * 120.16902 * 0.52028 * 17 16 15 19 19 C 1.50705 * 119.86204 * 179.76703 * 18 17 16 20 20 F 1.39905 * 109.46622 * 269.96810 * 19 18 17 21 21 F 1.39892 * 109.47475 * 29.96806 * 19 18 17 22 22 F 1.39894 * 109.47022 * 149.97472 * 19 18 17 23 23 C 1.38248 * 120.27354 * 359.73444 * 18 17 16 24 24 C 1.38286 * 120.09139 * 0.02562 * 23 18 17 25 25 F 1.35100 * 120.08830 * 179.97438 * 24 23 18 26 26 C 1.38787 * 120.01883 * 0.02562 * 14 13 11 27 27 H 0.96993 * 119.99844 * 0.02562 * 1 2 3 28 28 H 1.07993 * 120.01524 * 0.02562 * 10 9 7 29 29 H 1.07995 * 119.82153 * 179.97438 * 13 11 10 30 30 H 1.08008 * 120.04541 * 0.02562 * 16 15 14 31 31 H 1.08000 * 119.91308 * 180.22994 * 17 16 15 32 32 H 1.07994 * 119.95736 * 180.02562 * 23 18 17 33 33 H 1.08005 * 120.15455 * 179.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0961 1.6963 -1.2125 5 1 1.2773 2.7464 0.0006 6 1 3.0962 1.6964 1.2125 7 6 2.0080 -1.2118 0.0005 8 1 3.0488 -1.2343 0.2880 9 6 1.3522 -2.4071 -0.3753 10 6 0.2230 -2.3607 -1.2143 11 6 -0.4129 -3.5289 -1.5787 12 9 -1.4999 -3.4808 -2.3795 13 6 0.0541 -4.7521 -1.1220 14 6 1.1734 -4.8138 -0.2890 15 6 1.6659 -6.1270 0.1954 16 6 3.0125 -6.4600 0.0661 17 6 3.4664 -7.6807 0.5226 18 6 2.5856 -8.5789 1.0985 19 6 3.0877 -9.9121 1.5899 20 9 3.0042 -10.8515 0.5565 21 9 4.4194 -9.7867 1.9997 22 9 2.3055 -10.3359 2.6696 23 6 1.2468 -8.2581 1.2257 24 6 0.7810 -7.0360 0.7765 25 9 -0.5273 -6.7228 0.9003 26 6 1.8245 -3.6472 0.0867 27 1 -0.4849 0.8400 -0.0004 28 1 -0.1447 -1.4108 -1.5732 29 1 -0.4504 -5.6618 -1.4121 30 1 3.7011 -5.7621 -0.3870 31 1 4.5109 -7.9374 0.4258 32 1 0.5639 -8.9628 1.6764 33 1 2.6900 -3.6923 0.7312 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240399991.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:45 Heat of formation + Delta-G solvation = -208.986553 kcal Electronic energy + Delta-G solvation = -26494.573047 eV Core-core repulsion = 21705.347221 eV Total energy + Delta-G solvation = -4789.225826 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.30175 -48.69969 -47.81748 -47.76627 -47.75921 -39.32908 -37.40916 -34.18327 -32.38447 -30.80479 -29.86492 -28.92284 -25.86483 -25.60204 -23.00966 -22.57647 -20.92744 -20.63118 -18.77361 -18.62465 -18.53641 -17.81002 -16.29762 -16.17781 -16.10334 -15.55927 -15.27244 -14.94608 -14.81362 -14.64999 -14.60263 -14.43887 -14.42222 -14.23202 -14.06578 -13.92021 -13.78974 -13.17576 -12.98491 -12.66620 -12.58035 -12.20148 -11.97427 -11.77620 -11.43856 -11.19601 -11.10461 -10.94458 -10.60847 -10.21287 -9.88572 -9.41867 -9.18733 -8.84063 -7.70743 -7.47772 -6.98576 -4.65274 0.66351 1.07048 2.45643 2.49304 2.51293 2.95826 2.97146 3.02208 3.37405 3.52740 3.76451 3.84911 4.27049 4.28658 4.38002 4.70202 4.82042 4.83809 5.15553 5.32198 5.46214 5.62719 5.84639 5.88259 6.06420 6.13043 6.24890 6.37478 6.61209 6.76921 6.78264 6.97750 7.22604 7.44521 7.50953 7.68759 7.95636 8.31368 8.58439 8.59977 9.94719 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.018644 B = 0.003083 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.475866 B = 9079.023812 C =10028.880212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.075 3.925 3 Si 0.913 3.087 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.454 4.454 8 H 0.085 0.915 9 C 0.126 3.874 10 C -0.189 4.189 11 C 0.108 3.892 12 F -0.164 7.164 13 C -0.249 4.249 14 C -0.029 4.029 15 C -0.010 4.010 16 C -0.086 4.086 17 C -0.080 4.080 18 C -0.175 4.175 19 C 0.513 3.487 20 F -0.177 7.177 21 F -0.176 7.176 22 F -0.178 7.178 23 C -0.108 4.108 24 C 0.104 3.896 25 F -0.122 7.122 26 C -0.201 4.201 27 H 0.286 0.714 28 H 0.132 0.868 29 H 0.103 0.897 30 H 0.148 0.852 31 H 0.140 0.860 32 H 0.145 0.855 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.752 -12.198 1.935 13.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.145 4.145 3 Si 0.737 3.263 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.483 4.483 8 H 0.103 0.897 9 C 0.123 3.877 10 C -0.209 4.209 11 C 0.089 3.911 12 F -0.143 7.143 13 C -0.269 4.269 14 C -0.029 4.029 15 C -0.011 4.011 16 C -0.104 4.104 17 C -0.098 4.098 18 C -0.177 4.177 19 C 0.459 3.541 20 F -0.158 7.158 21 F -0.158 7.158 22 F -0.159 7.159 23 C -0.127 4.127 24 C 0.085 3.915 25 F -0.101 7.101 26 C -0.221 4.221 27 H 0.098 0.902 28 H 0.149 0.851 29 H 0.121 0.879 30 H 0.166 0.834 31 H 0.158 0.842 32 H 0.162 0.838 33 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 5.451 -12.054 1.948 13.372 hybrid contribution -0.174 0.543 0.077 0.576 sum 5.276 -11.511 2.025 12.824 Atomic orbital electron populations 1.69793 1.07761 1.30060 1.33046 1.25994 0.94787 1.01748 0.91961 0.86272 0.80137 0.79683 0.80204 1.18555 1.20142 1.18756 1.19577 0.98375 0.90868 1.39455 0.89681 1.17259 0.90246 0.92098 0.88083 1.21415 1.00671 0.96111 1.02747 1.17498 0.85328 0.94836 0.93475 1.91352 1.53231 1.97520 1.72174 1.20186 1.01758 0.95481 1.09504 1.17847 0.96346 0.89845 0.98890 1.19409 0.92978 0.93894 0.94845 1.21211 0.94344 0.96061 0.98749 1.20891 0.99669 0.93111 0.96175 1.19619 0.95245 0.94392 1.08415 1.18195 0.75228 0.85393 0.75273 1.93228 1.95961 1.67872 1.58766 1.93187 1.35785 1.96093 1.90691 1.93189 1.74635 1.91391 1.56676 1.20699 0.94965 0.96381 1.00673 1.17528 0.79124 0.93690 1.01165 1.91558 1.31880 1.92950 1.93662 1.21046 1.03512 0.91322 1.06220 0.90245 0.85054 0.87932 0.83406 0.84191 0.83759 0.87714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.14 10.96 55.55 0.61 -18.53 16 2 C 0.08 1.75 5.14 -17.34 -0.09 1.66 16 3 Si 0.91 17.30 29.60 -169.99 -5.03 12.27 16 4 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 5 H -0.28 -5.16 7.11 56.52 0.40 -4.75 16 6 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 7 C -0.45 -11.00 9.05 -37.74 -0.34 -11.34 16 8 H 0.09 1.93 7.91 -52.49 -0.41 1.51 16 9 C 0.13 3.09 5.57 -106.88 -0.60 2.50 16 10 C -0.19 -4.74 8.66 -38.75 -0.34 -5.07 16 11 C 0.11 2.56 7.28 -39.55 -0.29 2.27 16 12 F -0.16 -3.79 17.26 2.25 0.04 -3.75 16 13 C -0.25 -5.46 8.85 -38.89 -0.34 -5.81 16 14 C -0.03 -0.60 5.31 -104.99 -0.56 -1.15 16 15 C -0.01 -0.17 5.47 -104.84 -0.57 -0.75 16 16 C -0.09 -1.17 9.51 -39.26 -0.37 -1.54 16 17 C -0.08 -0.94 9.38 -39.62 -0.37 -1.31 16 18 C -0.18 -2.14 5.46 -104.57 -0.57 -2.71 16 19 C 0.51 5.78 3.36 36.01 0.12 5.90 16 20 F -0.18 -2.03 17.30 2.25 0.04 -1.99 16 21 F -0.18 -1.94 16.45 2.25 0.04 -1.91 16 22 F -0.18 -2.04 16.45 2.25 0.04 -2.00 16 23 C -0.11 -1.43 9.36 -39.56 -0.37 -1.80 16 24 C 0.10 1.67 7.15 -39.08 -0.28 1.39 16 25 F -0.12 -2.17 15.88 2.25 0.04 -2.14 16 26 C -0.20 -4.42 9.25 -38.52 -0.36 -4.77 16 27 H 0.29 6.38 8.30 -40.82 -0.34 6.04 16 28 H 0.13 3.42 6.15 -52.49 -0.32 3.09 16 29 H 0.10 2.12 7.76 -52.49 -0.41 1.71 16 30 H 0.15 1.82 8.04 -52.48 -0.42 1.39 16 31 H 0.14 1.27 7.59 -52.49 -0.40 0.87 16 32 H 0.14 1.62 7.59 -52.49 -0.40 1.22 16 33 H 0.10 2.10 8.04 -52.48 -0.42 1.67 16 LS Contribution 315.39 15.07 4.75 4.75 Total: -1.00 -25.35 315.39 -6.73 -32.08 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -1.92 Total: 3.76 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: -5.33 Total: -22.53 kcal Atomic # 7 Polarization: -19.14 SS G_CDS: 0.61 Total: -18.53 kcal Atomic # 9 Polarization: -11.98 SS G_CDS: 0.19 Total: -11.79 kcal Atomic # 14 Polarization: 17.30 SS G_CDS: -5.03 Total: 12.27 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -25.35 -6.73 -32.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240399991.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.909 kcal (2) G-P(sol) polarization free energy of solvation -25.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds