Wall clock time and date at job start Tue Mar 31 2020 15:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86802 * 120.00087 * 2 1 4 4 H 1.48499 * 109.46938 * 239.99952 * 3 2 1 5 5 H 1.48501 * 109.46833 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47210 * 120.00059 * 3 2 1 7 7 C 1.39928 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00087 * 197.89834 * 7 2 1 9 9 C 1.41421 * 119.99900 * 17.89949 * 7 2 1 10 10 C 1.40754 * 120.17203 * 24.51795 * 9 7 2 11 11 C 1.37904 * 119.96710 * 179.97438 * 10 9 7 12 12 F 1.35098 * 119.83368 * 179.72301 * 11 10 9 13 13 C 1.38663 * 120.32869 * 0.02562 * 11 10 9 14 14 C 1.39665 * 120.35213 * 359.97438 * 13 11 10 15 15 C 1.48380 * 119.98857 * 179.97438 * 14 13 11 16 16 C 1.39325 * 120.13456 * 129.74331 * 15 14 13 17 17 C 1.38003 * 119.90663 * 179.76490 * 16 15 14 18 18 C 1.38356 * 120.16902 * 0.52028 * 17 16 15 19 19 C 1.50705 * 119.86204 * 179.76703 * 18 17 16 20 20 F 1.39905 * 109.46622 * 269.96810 * 19 18 17 21 21 F 1.39892 * 109.47475 * 29.96806 * 19 18 17 22 22 F 1.39894 * 109.47022 * 149.97472 * 19 18 17 23 23 C 1.38248 * 120.27354 * 359.73444 * 18 17 16 24 24 C 1.38286 * 120.09139 * 0.02562 * 23 18 17 25 25 F 1.35100 * 120.08830 * 179.97438 * 24 23 18 26 26 C 1.38787 * 120.01883 * 0.02562 * 14 13 11 27 27 H 0.96993 * 119.99844 * 0.02562 * 1 2 3 28 28 H 1.07993 * 120.01524 * 0.02562 * 10 9 7 29 29 H 1.07995 * 119.82153 * 179.97438 * 13 11 10 30 30 H 1.08008 * 120.04541 * 0.02562 * 16 15 14 31 31 H 1.08000 * 119.91308 * 180.22994 * 17 16 15 32 32 H 1.07994 * 119.95736 * 180.02562 * 23 18 17 33 33 H 1.08005 * 120.15455 * 179.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0961 1.6963 -1.2125 5 1 1.2773 2.7464 0.0006 6 1 3.0962 1.6964 1.2125 7 6 2.0080 -1.2118 0.0005 8 1 3.0488 -1.2343 0.2880 9 6 1.3522 -2.4071 -0.3753 10 6 0.2230 -2.3607 -1.2143 11 6 -0.4129 -3.5289 -1.5787 12 9 -1.4999 -3.4808 -2.3795 13 6 0.0541 -4.7521 -1.1220 14 6 1.1734 -4.8138 -0.2890 15 6 1.6659 -6.1270 0.1954 16 6 3.0125 -6.4600 0.0661 17 6 3.4664 -7.6807 0.5226 18 6 2.5856 -8.5789 1.0985 19 6 3.0877 -9.9121 1.5899 20 9 3.0042 -10.8515 0.5565 21 9 4.4194 -9.7867 1.9997 22 9 2.3055 -10.3359 2.6696 23 6 1.2468 -8.2581 1.2257 24 6 0.7810 -7.0360 0.7765 25 9 -0.5273 -6.7228 0.9003 26 6 1.8245 -3.6472 0.0867 27 1 -0.4849 0.8400 -0.0004 28 1 -0.1447 -1.4108 -1.5732 29 1 -0.4504 -5.6618 -1.4121 30 1 3.7011 -5.7621 -0.3870 31 1 4.5109 -7.9374 0.4258 32 1 0.5639 -8.9628 1.6764 33 1 2.6900 -3.6923 0.7312 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240399991.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:44 Heat of formation + Delta-G solvation = -217.958490 kcal Electronic energy + Delta-G solvation = -26494.962100 eV Core-core repulsion = 21705.347221 eV Total energy + Delta-G solvation = -4789.614878 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.19400 -49.98958 -49.63760 -48.70277 -48.65103 -40.53796 -39.03868 -35.85803 -33.76674 -31.97076 -31.54719 -30.43039 -27.46943 -26.94706 -24.14400 -23.86301 -22.63995 -22.14794 -19.83210 -19.51892 -19.48306 -19.40682 -17.90208 -17.49428 -17.25432 -16.95347 -16.81229 -16.63070 -16.37756 -16.28218 -16.11247 -15.53000 -15.49572 -15.13830 -15.01453 -14.80133 -14.75417 -14.69051 -14.36860 -14.07640 -13.86553 -13.56774 -13.46939 -13.17446 -12.92504 -12.76813 -12.58336 -12.42648 -12.14374 -11.96113 -11.59189 -11.10077 -10.46462 -9.99520 -9.50263 -9.19372 -8.73361 -6.49823 -0.49572 -0.00319 0.72059 0.80044 1.40209 1.49676 1.53778 1.55243 2.17574 2.20903 2.56692 2.59084 2.90206 3.24463 3.37225 3.40385 3.46219 3.70544 3.84071 3.92793 4.09212 4.37803 4.42690 4.60942 4.73003 4.80440 4.87387 4.96496 5.00643 5.14994 5.22369 5.47778 5.58716 5.66220 5.72823 5.88434 6.14532 6.49441 6.77510 6.79253 8.22397 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.018644 B = 0.003083 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.475866 B = 9079.023812 C =10028.880212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.034 3.966 3 Si 0.987 3.013 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.254 1.254 7 C -0.482 4.482 8 H 0.095 0.905 9 C 0.103 3.897 10 C -0.219 4.219 11 C 0.095 3.905 12 F -0.166 7.166 13 C -0.256 4.256 14 C -0.015 4.015 15 C -0.040 4.040 16 C -0.078 4.078 17 C -0.065 4.065 18 C -0.168 4.168 19 C 0.522 3.478 20 F -0.176 7.176 21 F -0.171 7.171 22 F -0.178 7.178 23 C -0.100 4.100 24 C 0.086 3.914 25 F -0.140 7.140 26 C -0.206 4.206 27 H 0.292 0.708 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.162 0.838 31 H 0.175 0.825 32 H 0.163 0.837 33 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.062 -13.611 2.751 16.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.182 4.182 3 Si 0.807 3.193 4 H -0.181 1.181 5 H -0.197 1.197 6 H -0.177 1.177 7 C -0.510 4.510 8 H 0.113 0.887 9 C 0.101 3.899 10 C -0.240 4.240 11 C 0.076 3.924 12 F -0.145 7.145 13 C -0.276 4.276 14 C -0.016 4.016 15 C -0.041 4.041 16 C -0.096 4.096 17 C -0.082 4.082 18 C -0.169 4.169 19 C 0.468 3.532 20 F -0.157 7.157 21 F -0.152 7.152 22 F -0.159 7.159 23 C -0.119 4.119 24 C 0.067 3.933 25 F -0.118 7.118 26 C -0.226 4.226 27 H 0.103 0.897 28 H 0.130 0.870 29 H 0.131 0.869 30 H 0.180 0.820 31 H 0.192 0.808 32 H 0.181 0.819 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 7.760 -13.491 2.764 15.807 hybrid contribution -0.862 0.786 -0.141 1.175 sum 6.897 -12.705 2.623 14.692 Atomic orbital electron populations 1.69871 1.09438 1.31241 1.33839 1.26908 0.95395 1.05097 0.90846 0.85168 0.78698 0.74995 0.80462 1.18118 1.19704 1.17741 1.19930 0.99019 0.91625 1.40414 0.88653 1.17610 0.90405 0.93598 0.88324 1.21315 1.02226 0.95701 1.04741 1.17722 0.85445 0.95415 0.93825 1.91331 1.53319 1.97583 1.72244 1.20393 1.02539 0.94964 1.09706 1.18108 0.94933 0.91558 0.96972 1.19312 0.94696 0.92682 0.97416 1.21364 0.92955 0.97096 0.98179 1.21222 1.01181 0.91704 0.94133 1.19829 0.94900 0.94903 1.07280 1.17956 0.75336 0.84758 0.75195 1.93240 1.95970 1.67742 1.58773 1.93205 1.35365 1.96036 1.90626 1.93199 1.74691 1.91326 1.56670 1.20842 0.95836 0.95435 0.99802 1.17728 0.78390 0.94735 1.02462 1.91512 1.33131 1.93236 1.93965 1.21261 1.04165 0.90909 1.06234 0.89740 0.87046 0.86927 0.82022 0.80776 0.81908 0.85859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.47 10.96 21.82 0.24 -41.23 16 2 C 0.03 1.61 5.14 85.25 0.44 2.05 16 3 Si 0.99 35.42 29.60 68.60 2.03 37.45 16 4 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 5 H -0.27 -9.48 7.11 99.48 0.71 -8.78 16 6 H -0.25 -8.65 7.11 99.48 0.71 -7.94 16 7 C -0.48 -23.75 9.05 23.46 0.21 -23.54 16 8 H 0.10 4.33 7.91 -2.91 -0.02 4.31 16 9 C 0.10 5.23 5.57 -21.33 -0.12 5.11 16 10 C -0.22 -11.54 8.66 22.81 0.20 -11.34 16 11 C 0.09 4.70 7.28 22.29 0.16 4.87 16 12 F -0.17 -8.00 17.26 44.97 0.78 -7.22 16 13 C -0.26 -11.46 8.85 22.72 0.20 -11.26 16 14 C -0.02 -0.63 5.31 -20.10 -0.11 -0.74 16 15 C -0.04 -1.30 5.47 -20.00 -0.11 -1.41 16 16 C -0.08 -1.91 9.51 22.48 0.21 -1.70 16 17 C -0.06 -1.25 9.38 22.24 0.21 -1.04 16 18 C -0.17 -3.49 5.46 -19.83 -0.11 -3.60 16 19 C 0.52 9.82 3.36 71.24 0.24 10.06 16 20 F -0.18 -3.43 17.30 44.97 0.78 -2.66 16 21 F -0.17 -3.08 16.45 44.97 0.74 -2.34 16 22 F -0.18 -3.50 16.45 44.97 0.74 -2.76 16 23 C -0.10 -2.39 9.36 22.28 0.21 -2.19 16 24 C 0.09 2.65 7.15 22.59 0.16 2.82 16 25 F -0.14 -4.97 15.88 44.97 0.71 -4.26 16 26 C -0.21 -9.10 9.25 22.96 0.21 -8.89 16 27 H 0.29 13.42 8.30 -92.71 -0.77 12.65 16 28 H 0.11 6.19 6.15 -2.91 -0.02 6.17 16 29 H 0.11 4.72 7.76 -2.91 -0.02 4.69 16 30 H 0.16 3.48 8.04 -2.91 -0.02 3.46 16 31 H 0.17 2.23 7.59 -2.91 -0.02 2.20 16 32 H 0.16 3.22 7.59 -2.91 -0.02 3.20 16 33 H 0.12 4.84 8.04 -2.91 -0.02 4.82 16 Total: -1.00 -56.53 315.39 9.23 -47.31 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 1.20 Total: 16.50 kcal Atomic # 6 Polarization: -42.81 SS G_CDS: 2.01 Total: -40.80 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: 0.24 Total: -41.23 kcal Atomic # 9 Polarization: -22.98 SS G_CDS: 3.75 Total: -19.23 kcal Atomic # 14 Polarization: 35.42 SS G_CDS: 2.03 Total: 37.45 kcal Total: -56.53 9.23 -47.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240399991.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.652 kcal (2) G-P(sol) polarization free energy of solvation -56.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds