Wall clock time and date at job start Tue Mar 31 2020 15:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30801 * 1 3 3 Si 1.86800 * 120.00114 * 2 1 4 4 H 1.48499 * 109.47192 * 239.99743 * 3 2 1 5 5 H 1.48509 * 109.47092 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47040 * 119.99293 * 3 2 1 7 7 C 1.39999 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99557 * 197.96700 * 7 2 1 9 9 C 1.41035 * 120.00360 * 17.96792 * 7 2 1 10 10 C 1.40971 * 120.10073 * 24.71236 * 9 7 2 11 11 C 1.36238 * 119.92181 * 180.23445 * 10 9 7 12 12 C 1.39927 * 120.14404 * 359.49314 * 11 10 9 13 13 C 1.47956 * 119.89519 * 180.23202 * 12 11 10 14 14 C 1.39608 * 120.13010 * 65.27638 * 13 12 11 15 15 C 1.38138 * 119.82408 * 180.02562 * 14 13 12 16 16 F 1.35108 * 119.94842 * 179.97438 * 15 14 13 17 17 C 1.38633 * 120.09780 * 359.97438 * 15 14 13 18 18 C 1.38327 * 120.26722 * 359.97438 * 17 15 14 19 19 C 1.37959 * 120.17373 * 359.76374 * 18 17 15 20 20 C 1.50707 * 120.05165 * 180.25471 * 19 18 17 21 21 F 1.39901 * 109.46835 * 0.23602 * 20 19 18 22 22 F 1.39904 * 109.46903 * 120.23279 * 20 19 18 23 23 F 1.39898 * 109.47316 * 240.23504 * 20 19 18 24 24 C 1.40139 * 120.21079 * 0.50850 * 12 11 10 25 25 F 1.35096 * 119.96841 * 179.72422 * 24 12 11 26 26 C 1.36490 * 120.07271 * 359.75192 * 24 12 11 27 27 H 0.96998 * 120.00168 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.03888 * 359.95586 * 10 9 7 29 29 H 1.07995 * 119.92325 * 179.72469 * 11 10 9 30 30 H 1.08000 * 120.08274 * 359.97438 * 14 13 12 31 31 H 1.07997 * 119.86728 * 180.02562 * 17 15 14 32 32 H 1.08001 * 119.91230 * 180.02562 * 18 17 15 33 33 H 1.07999 * 120.07668 * 180.02562 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 3.0958 1.6964 -1.2125 5 1 1.2770 2.7465 -0.0006 6 1 3.0957 1.6964 1.2126 7 6 2.0080 -1.2125 0.0005 8 1 3.0485 -1.2351 0.2891 9 6 1.3544 -2.4043 -0.3757 10 6 0.2269 -2.3559 -1.2205 11 6 -0.4045 -3.5090 -1.5778 12 6 0.0700 -4.7420 -1.1166 13 6 -0.6169 -5.9913 -1.5122 14 6 -0.6244 -6.3937 -2.8490 15 6 -1.2681 -7.5610 -3.2114 16 9 -1.2775 -7.9526 -4.5045 17 6 -1.9045 -8.3312 -2.2503 18 6 -1.8986 -7.9367 -0.9245 19 6 -1.2545 -6.7757 -0.5494 20 6 -1.2448 -6.3515 0.8967 21 9 -1.9438 -7.2905 1.6628 22 9 0.0762 -6.2702 1.3499 23 9 -1.8579 -5.1000 1.0196 24 6 1.1904 -4.7968 -0.2765 25 9 1.6410 -5.9894 0.1703 26 6 1.8265 -3.6466 0.0912 27 1 -0.4850 0.8400 -0.0004 28 1 -0.1386 -1.4055 -1.5804 29 1 -1.2709 -3.4717 -2.2214 30 1 -0.1290 -5.7936 -3.5979 31 1 -2.4063 -9.2433 -2.5377 32 1 -2.3958 -8.5413 -0.1805 33 1 2.6901 -3.6888 0.7383 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240531802.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:39 Heat of formation + Delta-G solvation = -197.841120 kcal Electronic energy + Delta-G solvation = -28103.447602 eV Core-core repulsion = 23314.705078 eV Total energy + Delta-G solvation = -4788.742524 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.64419 -48.92288 -47.89635 -47.15770 -46.92938 -39.12704 -37.34751 -34.08688 -31.95452 -31.36105 -29.54556 -28.85410 -26.04236 -25.10329 -22.89833 -21.89781 -21.14765 -20.61325 -18.12358 -17.98492 -17.92969 -17.82197 -17.34624 -16.06812 -15.74432 -15.56656 -15.29339 -15.04464 -14.89413 -14.74741 -14.23616 -13.98562 -13.84802 -13.43775 -13.39985 -13.27924 -13.20634 -13.12897 -12.65503 -12.57061 -12.44843 -12.13131 -11.98285 -11.41106 -11.32871 -11.25718 -11.07417 -10.73523 -10.61125 -10.25783 -9.75189 -9.38393 -8.96887 -8.79647 -7.78260 -7.43907 -7.10057 -4.70060 0.93377 1.21728 2.39647 2.77113 2.91562 2.93069 2.98779 3.14202 3.47522 3.70023 4.11788 4.24141 4.28326 4.48876 4.86483 4.91786 4.95275 5.17104 5.34568 5.41254 5.52593 5.82011 5.91900 6.06006 6.09058 6.15474 6.41800 6.67492 6.69912 6.74335 6.86607 6.91133 7.35494 7.38658 7.69693 7.76598 7.93101 8.30500 8.52729 8.60885 9.82359 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.016824 B = 0.004280 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.903912 B = 6540.590318 C = 7284.164415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.075 3.925 3 Si 0.916 3.084 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.438 4.438 8 H 0.086 0.914 9 C 0.141 3.859 10 C -0.178 4.178 11 C -0.041 4.041 12 C -0.277 4.277 13 C 0.098 3.902 14 C -0.157 4.157 15 C 0.127 3.873 16 F -0.138 7.138 17 C -0.179 4.179 18 C -0.045 4.045 19 C -0.197 4.197 20 C 0.506 3.494 21 F -0.191 7.191 22 F -0.159 7.159 23 F -0.168 7.168 24 C 0.161 3.839 25 F -0.154 7.154 26 C -0.266 4.266 27 H 0.289 0.711 28 H 0.125 0.875 29 H 0.099 0.901 30 H 0.145 0.855 31 H 0.139 0.861 32 H 0.142 0.858 33 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.739 -8.500 -2.594 9.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.147 4.147 3 Si 0.739 3.261 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.466 4.466 8 H 0.104 0.896 9 C 0.137 3.863 10 C -0.197 4.197 11 C -0.060 4.060 12 C -0.279 4.279 13 C 0.098 3.902 14 C -0.176 4.176 15 C 0.108 3.892 16 F -0.117 7.117 17 C -0.198 4.198 18 C -0.063 4.063 19 C -0.199 4.199 20 C 0.452 3.548 21 F -0.172 7.172 22 F -0.140 7.140 23 F -0.149 7.149 24 C 0.142 3.858 25 F -0.133 7.133 26 C -0.287 4.287 27 H 0.100 0.900 28 H 0.142 0.858 29 H 0.117 0.883 30 H 0.162 0.838 31 H 0.157 0.843 32 H 0.159 0.841 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.937 -8.372 -2.561 9.599 hybrid contribution 0.315 0.511 0.160 0.621 sum -3.622 -7.861 -2.401 8.982 Atomic orbital electron populations 1.69800 1.07852 1.30360 1.31090 1.26080 0.94844 1.01949 0.91858 0.86222 0.80181 0.79280 0.80403 1.18401 1.19970 1.18605 1.19721 0.98521 0.91057 1.37259 0.89572 1.17477 0.90284 0.91314 0.87204 1.21008 0.99674 0.97141 1.01920 1.20165 0.97416 0.90920 0.97490 1.17788 1.03505 0.91540 1.15066 1.18337 0.89437 0.91906 0.90566 1.21375 1.02769 0.96396 0.97076 1.17777 0.98486 0.94614 0.78334 1.91501 1.94720 1.90695 1.34766 1.20956 1.04626 1.01931 0.92290 1.20696 0.95591 0.94065 0.95964 1.20297 1.07264 0.99956 0.92344 1.18207 0.74582 0.74975 0.87038 1.93099 1.79857 1.65887 1.78403 1.93372 1.34016 1.95866 1.90780 1.93247 1.82973 1.42167 1.96520 1.17101 0.93960 0.80006 0.94774 1.91401 1.88765 1.45471 1.87617 1.20603 1.06387 0.91547 1.10136 0.90005 0.85750 0.88300 0.83766 0.84309 0.84059 0.87388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.08 10.96 55.55 0.61 -17.47 16 2 C 0.07 1.70 5.13 -17.33 -0.09 1.61 16 3 Si 0.92 16.90 29.60 -169.99 -5.03 11.87 16 4 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 5 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 6 H -0.26 -4.81 7.11 56.52 0.40 -4.40 16 7 C -0.44 -10.62 9.03 -37.86 -0.34 -10.97 16 8 H 0.09 1.99 7.91 -52.48 -0.42 1.57 16 9 C 0.14 3.48 5.57 -106.81 -0.60 2.89 16 10 C -0.18 -4.24 8.63 -39.27 -0.34 -4.58 16 11 C -0.04 -0.89 9.66 -39.67 -0.38 -1.28 16 12 C -0.28 -5.91 4.10 -104.57 -0.43 -6.34 16 13 C 0.10 1.81 4.98 -104.89 -0.52 1.29 16 14 C -0.16 -2.54 9.72 -39.11 -0.38 -2.92 16 15 C 0.13 1.82 7.29 -39.47 -0.29 1.53 16 16 F -0.14 -1.92 17.26 2.25 0.04 -1.88 16 17 C -0.18 -2.27 10.02 -39.40 -0.39 -2.67 16 18 C -0.05 -0.62 9.42 -39.65 -0.37 -0.99 16 19 C -0.20 -3.40 5.33 -104.21 -0.56 -3.95 16 20 C 0.51 9.35 2.88 36.01 0.10 9.46 16 21 F -0.19 -3.09 15.97 2.25 0.04 -3.05 16 22 F -0.16 -3.26 11.85 2.25 0.03 -3.23 16 23 F -0.17 -3.42 16.52 2.25 0.04 -3.39 16 24 C 0.16 3.66 5.73 -39.50 -0.23 3.44 16 25 F -0.15 -3.39 13.40 2.25 0.03 -3.36 16 26 C -0.27 -6.36 9.70 -39.22 -0.38 -6.74 16 27 H 0.29 6.13 8.30 -40.82 -0.34 5.79 16 28 H 0.12 3.00 6.16 -52.49 -0.32 2.68 16 29 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 30 H 0.14 2.20 8.06 -52.49 -0.42 1.78 16 31 H 0.14 1.34 8.06 -52.49 -0.42 0.91 16 32 H 0.14 1.59 7.15 -52.49 -0.38 1.22 16 33 H 0.11 2.47 8.06 -52.49 -0.42 2.04 16 LS Contribution 305.83 15.07 4.61 4.61 Total: -1.00 -25.17 305.83 -6.78 -31.95 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -1.94 Total: 4.19 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: -5.19 Total: -20.24 kcal Atomic # 7 Polarization: -18.08 SS G_CDS: 0.61 Total: -17.47 kcal Atomic # 9 Polarization: -15.08 SS G_CDS: 0.17 Total: -14.91 kcal Atomic # 14 Polarization: 16.90 SS G_CDS: -5.03 Total: 11.87 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -25.17 -6.78 -31.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240531802.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.892 kcal (2) G-P(sol) polarization free energy of solvation -25.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds