Wall clock time and date at job start Tue Mar 31 2020 15:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30801 * 1 3 3 Si 1.86800 * 120.00114 * 2 1 4 4 H 1.48499 * 109.47192 * 239.99743 * 3 2 1 5 5 H 1.48509 * 109.47092 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47040 * 119.99293 * 3 2 1 7 7 C 1.39999 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99557 * 197.96700 * 7 2 1 9 9 C 1.41035 * 120.00360 * 17.96792 * 7 2 1 10 10 C 1.40971 * 120.10073 * 24.71236 * 9 7 2 11 11 C 1.36238 * 119.92181 * 180.23445 * 10 9 7 12 12 C 1.39927 * 120.14404 * 359.49314 * 11 10 9 13 13 C 1.47956 * 119.89519 * 180.23202 * 12 11 10 14 14 C 1.39608 * 120.13010 * 65.27638 * 13 12 11 15 15 C 1.38138 * 119.82408 * 180.02562 * 14 13 12 16 16 F 1.35108 * 119.94842 * 179.97438 * 15 14 13 17 17 C 1.38633 * 120.09780 * 359.97438 * 15 14 13 18 18 C 1.38327 * 120.26722 * 359.97438 * 17 15 14 19 19 C 1.37959 * 120.17373 * 359.76374 * 18 17 15 20 20 C 1.50707 * 120.05165 * 180.25471 * 19 18 17 21 21 F 1.39901 * 109.46835 * 0.23602 * 20 19 18 22 22 F 1.39904 * 109.46903 * 120.23279 * 20 19 18 23 23 F 1.39898 * 109.47316 * 240.23504 * 20 19 18 24 24 C 1.40139 * 120.21079 * 0.50850 * 12 11 10 25 25 F 1.35096 * 119.96841 * 179.72422 * 24 12 11 26 26 C 1.36490 * 120.07271 * 359.75192 * 24 12 11 27 27 H 0.96998 * 120.00168 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.03888 * 359.95586 * 10 9 7 29 29 H 1.07995 * 119.92325 * 179.72469 * 11 10 9 30 30 H 1.08000 * 120.08274 * 359.97438 * 14 13 12 31 31 H 1.07997 * 119.86728 * 180.02562 * 17 15 14 32 32 H 1.08001 * 119.91230 * 180.02562 * 18 17 15 33 33 H 1.07999 * 120.07668 * 180.02562 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 3.0958 1.6964 -1.2125 5 1 1.2770 2.7465 -0.0006 6 1 3.0957 1.6964 1.2126 7 6 2.0080 -1.2125 0.0005 8 1 3.0485 -1.2351 0.2891 9 6 1.3544 -2.4043 -0.3757 10 6 0.2269 -2.3559 -1.2205 11 6 -0.4045 -3.5090 -1.5778 12 6 0.0700 -4.7420 -1.1166 13 6 -0.6169 -5.9913 -1.5122 14 6 -0.6244 -6.3937 -2.8490 15 6 -1.2681 -7.5610 -3.2114 16 9 -1.2775 -7.9526 -4.5045 17 6 -1.9045 -8.3312 -2.2503 18 6 -1.8986 -7.9367 -0.9245 19 6 -1.2545 -6.7757 -0.5494 20 6 -1.2448 -6.3515 0.8967 21 9 -1.9438 -7.2905 1.6628 22 9 0.0762 -6.2702 1.3499 23 9 -1.8579 -5.1000 1.0196 24 6 1.1904 -4.7968 -0.2765 25 9 1.6410 -5.9894 0.1703 26 6 1.8265 -3.6466 0.0912 27 1 -0.4850 0.8400 -0.0004 28 1 -0.1386 -1.4055 -1.5804 29 1 -1.2709 -3.4717 -2.2214 30 1 -0.1290 -5.7936 -3.5979 31 1 -2.4063 -9.2433 -2.5377 32 1 -2.3958 -8.5413 -0.1805 33 1 2.6901 -3.6888 0.7383 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240531802.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:38 Heat of formation + Delta-G solvation = -207.012261 kcal Electronic energy + Delta-G solvation = -28103.845292 eV Core-core repulsion = 23314.705078 eV Total energy + Delta-G solvation = -4789.140214 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.11830 -50.03775 -49.63836 -48.60843 -48.49002 -40.45866 -39.01768 -35.77384 -33.42731 -32.61250 -31.22652 -30.54241 -27.62477 -26.52744 -24.30347 -23.35165 -22.83326 -22.17404 -19.64427 -19.50383 -19.41502 -19.36131 -18.62016 -17.45971 -17.30362 -16.99276 -16.74044 -16.66828 -16.48062 -16.24184 -15.62399 -15.41077 -15.30692 -14.92783 -14.89067 -14.72402 -14.61204 -14.33751 -14.33005 -14.16864 -14.04771 -13.60938 -13.48427 -12.92607 -12.81433 -12.70255 -12.67335 -12.39543 -12.07938 -11.91354 -11.47337 -11.08936 -10.20817 -10.05190 -9.54781 -9.20864 -8.80616 -6.52259 -0.30777 0.01187 0.71769 0.92834 1.39182 1.48711 1.52814 1.73423 2.15890 2.24558 2.53805 2.77640 3.05255 3.11964 3.47271 3.48553 3.62672 3.72775 3.82217 4.01892 4.22822 4.29735 4.54096 4.74690 4.85570 4.88189 4.93897 4.98812 5.01598 5.13386 5.20207 5.57021 5.57477 5.69040 5.90433 5.94389 6.14855 6.50000 6.73238 6.79981 8.15181 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.016824 B = 0.004280 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.903912 B = 6540.590318 C = 7284.164415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.040 3.960 3 Si 0.988 3.012 4 H -0.257 1.257 5 H -0.264 1.264 6 H -0.259 1.259 7 C -0.474 4.474 8 H 0.085 0.915 9 C 0.115 3.885 10 C -0.195 4.195 11 C -0.042 4.042 12 C -0.261 4.261 13 C 0.065 3.935 14 C -0.160 4.160 15 C 0.131 3.869 16 F -0.132 7.132 17 C -0.153 4.153 18 C -0.036 4.036 19 C -0.207 4.207 20 C 0.501 3.499 21 F -0.176 7.176 22 F -0.176 7.176 23 F -0.185 7.185 24 C 0.151 3.849 25 F -0.151 7.151 26 C -0.288 4.288 27 H 0.297 0.703 28 H 0.116 0.884 29 H 0.121 0.879 30 H 0.146 0.854 31 H 0.182 0.818 32 H 0.173 0.827 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.003 -10.176 -3.583 11.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.179 4.179 3 Si 0.808 3.192 4 H -0.181 1.181 5 H -0.188 1.188 6 H -0.183 1.183 7 C -0.501 4.501 8 H 0.104 0.896 9 C 0.112 3.888 10 C -0.214 4.214 11 C -0.060 4.060 12 C -0.263 4.263 13 C 0.065 3.935 14 C -0.179 4.179 15 C 0.112 3.888 16 F -0.111 7.111 17 C -0.171 4.171 18 C -0.054 4.054 19 C -0.209 4.209 20 C 0.447 3.553 21 F -0.157 7.157 22 F -0.157 7.157 23 F -0.166 7.166 24 C 0.131 3.869 25 F -0.130 7.130 26 C -0.308 4.308 27 H 0.108 0.892 28 H 0.134 0.866 29 H 0.139 0.861 30 H 0.164 0.836 31 H 0.199 0.801 32 H 0.190 0.810 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.208 -10.072 -3.552 11.882 hybrid contribution 0.595 0.781 0.424 1.069 sum -4.614 -9.291 -3.128 10.835 Atomic orbital electron populations 1.69831 1.09194 1.31710 1.31629 1.26886 0.95515 1.04797 0.90744 0.85151 0.78831 0.74928 0.80330 1.18069 1.18795 1.18335 1.19960 0.98844 0.92120 1.39203 0.89644 1.17766 0.91122 0.91923 0.87980 1.21016 1.00197 0.97567 1.02608 1.20418 0.97684 0.90583 0.97353 1.18026 1.02328 0.92975 1.13000 1.18200 0.91618 0.91668 0.92025 1.21345 1.03115 0.97417 0.96029 1.17797 0.98087 0.94035 0.78919 1.91526 1.94608 1.90465 1.34486 1.21405 1.02341 1.02304 0.91038 1.21043 0.94392 0.92703 0.97269 1.20315 1.08485 1.01236 0.90867 1.18467 0.73903 0.74686 0.88223 1.93118 1.79367 1.65035 1.78202 1.93334 1.35366 1.95942 1.91075 1.93212 1.83184 1.43539 1.96692 1.17229 0.94479 0.79797 0.95346 1.91394 1.88815 1.45112 1.87652 1.20710 1.06975 0.92132 1.10989 0.89167 0.86624 0.86115 0.83624 0.80052 0.80991 0.87647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.73 10.96 21.84 0.24 -38.49 16 2 C 0.04 1.84 5.13 85.27 0.44 2.28 16 3 Si 0.99 34.99 29.60 68.60 2.03 37.02 16 4 H -0.26 -8.88 7.11 99.48 0.71 -8.17 16 5 H -0.26 -8.77 7.11 99.48 0.71 -8.07 16 6 H -0.26 -8.99 7.11 99.48 0.71 -8.29 16 7 C -0.47 -24.06 9.03 23.38 0.21 -23.84 16 8 H 0.09 4.15 7.91 -2.91 -0.02 4.13 16 9 C 0.12 6.00 5.57 -21.28 -0.12 5.88 16 10 C -0.19 -9.65 8.63 22.47 0.19 -9.45 16 11 C -0.04 -1.86 9.66 22.21 0.21 -1.64 16 12 C -0.26 -11.28 4.10 -19.83 -0.08 -11.36 16 13 C 0.07 2.34 4.98 -20.04 -0.10 2.24 16 14 C -0.16 -4.86 9.72 22.58 0.22 -4.64 16 15 C 0.13 3.26 7.29 22.34 0.16 3.43 16 16 F -0.13 -3.17 17.26 44.97 0.78 -2.40 16 17 C -0.15 -3.09 10.02 22.39 0.22 -2.86 16 18 C -0.04 -0.85 9.42 22.22 0.21 -0.64 16 19 C -0.21 -6.74 5.33 -19.60 -0.10 -6.85 16 20 C 0.50 18.12 2.88 71.24 0.21 18.32 16 21 F -0.18 -5.35 15.97 44.97 0.72 -4.63 16 22 F -0.18 -7.24 11.85 44.97 0.53 -6.71 16 23 F -0.18 -7.58 16.52 44.97 0.74 -6.84 16 24 C 0.15 7.06 5.73 22.32 0.13 7.19 16 25 F -0.15 -6.78 13.40 44.97 0.60 -6.18 16 26 C -0.29 -14.45 9.70 22.50 0.22 -14.23 16 27 H 0.30 12.84 8.30 -92.71 -0.77 12.07 16 28 H 0.12 5.84 6.16 -2.91 -0.02 5.82 16 29 H 0.12 4.70 8.06 -2.91 -0.02 4.67 16 30 H 0.15 4.27 8.06 -2.91 -0.02 4.25 16 31 H 0.18 2.22 8.06 -2.91 -0.02 2.20 16 32 H 0.17 2.98 7.15 -2.91 -0.02 2.96 16 33 H 0.11 5.14 8.06 -2.91 -0.02 5.11 16 Total: -1.00 -56.58 305.83 8.86 -47.72 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: 1.20 Total: 16.68 kcal Atomic # 6 Polarization: -38.20 SS G_CDS: 2.02 Total: -36.18 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 0.24 Total: -38.49 kcal Atomic # 9 Polarization: -30.12 SS G_CDS: 3.37 Total: -26.75 kcal Atomic # 14 Polarization: 34.99 SS G_CDS: 2.03 Total: 37.02 kcal Total: -56.58 8.86 -47.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240531802.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.289 kcal (2) G-P(sol) polarization free energy of solvation -56.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds