Wall clock time and date at job start Tue Mar 31 2020 15:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30851 * 1 3 3 Si 1.86804 * 119.99957 * 2 1 4 4 H 1.48499 * 109.46797 * 239.99783 * 3 2 1 5 5 H 1.48497 * 109.46937 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47137 * 119.99626 * 3 2 1 7 7 C 1.39931 * 119.99972 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99570 * 197.80403 * 7 2 1 9 9 C 1.41314 * 120.00033 * 17.80016 * 7 2 1 10 10 C 1.40777 * 120.20897 * 24.65652 * 9 7 2 11 11 C 1.37624 * 120.01979 * 179.97438 * 10 9 7 12 12 C 1.38504 * 120.45169 * 359.74653 * 11 10 9 13 13 C 1.39547 * 120.42229 * 0.51625 * 12 11 10 14 14 C 1.48389 * 120.01739 * 179.76410 * 13 12 11 15 15 C 1.39319 * 120.10911 * 64.71680 * 14 13 12 16 16 C 1.38230 * 119.85510 * 179.97438 * 15 14 13 17 17 F 1.35096 * 119.96582 * 179.72710 * 16 15 14 18 18 C 1.38563 * 120.06406 * 0.02562 * 16 15 14 19 19 C 1.38258 * 120.22180 * 359.97438 * 18 16 15 20 20 C 1.38046 * 120.14664 * 359.97438 * 19 18 16 21 21 C 1.50704 * 120.03410 * 180.02562 * 20 19 18 22 22 F 1.39899 * 109.47376 * 359.97438 * 21 20 19 23 23 F 1.39900 * 109.47115 * 119.98468 * 21 20 19 24 24 F 1.39907 * 109.46883 * 239.98210 * 21 20 19 25 25 C 1.39103 * 119.97034 * 359.48412 * 13 12 11 26 26 F 1.35099 * 120.22629 * 180.23247 * 25 13 12 27 27 H 0.96993 * 119.99841 * 0.02562 * 1 2 3 28 28 H 1.08004 * 119.98728 * 359.95875 * 10 9 7 29 29 H 1.07998 * 119.77243 * 180.02562 * 11 10 9 30 30 H 1.08005 * 119.78974 * 180.25410 * 12 11 10 31 31 H 1.08006 * 120.07542 * 0.02562 * 15 14 13 32 32 H 1.07998 * 119.88467 * 179.97438 * 18 16 15 33 33 H 1.08001 * 119.92639 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.0963 1.6963 -1.2125 5 1 1.2775 2.7464 -0.0006 6 1 3.0962 1.6965 1.2125 7 6 2.0082 -1.2118 0.0005 8 1 3.0494 -1.2340 0.2866 9 6 1.3523 -2.4065 -0.3730 10 6 0.2233 -2.3620 -1.2128 11 6 -0.4121 -3.5279 -1.5746 12 6 0.0543 -4.7511 -1.1222 13 6 1.1686 -4.8166 -0.2846 14 6 1.6575 -6.1315 0.1991 15 6 2.1612 -7.0651 -0.7040 16 6 2.6157 -8.2881 -0.2477 17 9 3.0995 -9.1972 -1.1221 18 6 2.5698 -8.5850 1.1050 19 6 2.0705 -7.6607 2.0038 20 6 1.6152 -6.4361 1.5579 21 6 1.0720 -5.4302 2.5399 22 9 1.1309 -5.9617 3.8327 23 9 1.8374 -4.2607 2.4810 24 9 -0.2569 -5.1346 2.2175 25 6 1.8243 -3.6490 0.0921 26 9 2.9063 -3.7067 0.8990 27 1 -0.4849 0.8400 -0.0004 28 1 -0.1444 -1.4125 -1.5730 29 1 -1.2776 -3.4892 -2.2194 30 1 -0.4501 -5.6598 -1.4161 31 1 2.1973 -6.8334 -1.7584 32 1 2.9253 -9.5416 1.4583 33 1 2.0374 -7.8969 3.0571 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240532149.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:12 Heat of formation + Delta-G solvation = -194.807507 kcal Electronic energy + Delta-G solvation = -28420.941007 eV Core-core repulsion = 23632.330030 eV Total energy + Delta-G solvation = -4788.610976 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.61024 -49.00213 -47.48816 -47.11813 -46.81281 -39.26372 -37.22202 -34.05738 -32.03030 -31.44602 -29.76740 -28.40930 -25.57729 -25.30959 -23.40900 -21.95348 -20.95509 -20.57386 -18.24861 -18.01242 -17.87643 -17.70685 -16.77506 -16.13265 -16.09675 -15.69314 -15.36720 -14.85964 -14.78104 -14.54328 -14.19203 -13.98928 -13.79946 -13.49575 -13.41859 -13.24463 -13.12492 -13.00360 -12.91859 -12.49359 -12.40851 -11.88178 -11.78481 -11.45282 -11.32702 -11.22534 -11.07321 -10.79792 -10.54798 -9.99661 -9.75671 -9.36631 -9.05486 -8.88795 -7.66705 -7.44716 -6.92512 -4.51570 0.83223 1.10785 2.46280 2.57961 3.00586 3.03397 3.09247 3.11957 3.37906 3.83658 4.07427 4.19075 4.38686 4.44398 4.74757 4.83618 4.96502 5.03317 5.32800 5.35790 5.64887 5.74145 5.78141 5.98652 6.03077 6.11208 6.30280 6.42576 6.65647 6.77155 6.92034 7.04104 7.28853 7.41824 7.74568 7.83447 7.92903 8.39155 8.61367 8.68546 10.01377 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.016781 B = 0.004728 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.137918 B = 5920.557776 C = 6469.905145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.077 3.923 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.449 4.449 8 H 0.084 0.916 9 C 0.085 3.915 10 C -0.135 4.135 11 C -0.112 4.112 12 C -0.188 4.188 13 C -0.100 4.100 14 C 0.070 3.930 15 C -0.148 4.148 16 C 0.127 3.873 17 F -0.136 7.136 18 C -0.170 4.170 19 C -0.046 4.046 20 C -0.185 4.185 21 C 0.502 3.498 22 F -0.190 7.190 23 F -0.148 7.148 24 F -0.170 7.170 25 C 0.007 3.993 26 F -0.148 7.148 27 H 0.285 0.715 28 H 0.128 0.872 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.147 0.853 32 H 0.142 0.858 33 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.496 -10.527 1.380 10.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.142 4.142 3 Si 0.737 3.263 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.478 4.478 8 H 0.102 0.898 9 C 0.082 3.918 10 C -0.154 4.154 11 C -0.130 4.130 12 C -0.208 4.208 13 C -0.101 4.101 14 C 0.070 3.930 15 C -0.167 4.167 16 C 0.107 3.893 17 F -0.114 7.114 18 C -0.189 4.189 19 C -0.064 4.064 20 C -0.186 4.186 21 C 0.448 3.552 22 F -0.172 7.172 23 F -0.129 7.129 24 F -0.152 7.152 25 C -0.013 4.013 26 F -0.127 7.127 27 H 0.096 0.904 28 H 0.146 0.854 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.165 0.835 32 H 0.160 0.840 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.332 -10.356 1.426 10.539 hybrid contribution 0.439 0.688 0.207 0.842 sum 1.771 -9.669 1.633 9.964 Atomic orbital electron populations 1.69796 1.07638 1.29855 1.33763 1.25917 0.94778 1.01537 0.92003 0.86264 0.80137 0.79607 0.80262 1.18605 1.20137 1.18754 1.19483 0.98459 0.90815 1.39019 0.89803 1.17523 0.92712 0.90543 0.91047 1.21303 0.97778 0.97496 0.98851 1.20635 0.99241 0.92667 1.00477 1.20129 0.98931 0.97023 1.04717 1.18185 0.99488 0.88470 1.03930 1.18478 0.90845 0.93412 0.90295 1.21238 1.01902 0.92043 1.01509 1.17731 0.96990 0.87259 0.87276 1.91508 1.85448 1.65710 1.68771 1.21002 1.05135 1.01563 0.91175 1.20740 0.94185 0.90953 1.00555 1.20213 1.08377 0.96109 0.93911 1.18228 0.76620 0.81579 0.78767 1.93102 1.96329 1.86494 1.41251 1.93456 1.74441 1.49218 1.95759 1.93234 1.35626 1.93885 1.92408 1.17708 0.90604 0.93369 0.99613 1.91334 1.53213 1.97133 1.70993 0.90399 0.85437 0.88240 0.88212 0.83509 0.84012 0.83712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.42 10.96 55.55 0.61 -18.81 16 2 C 0.08 1.86 5.14 -17.34 -0.09 1.77 16 3 Si 0.91 18.18 29.60 -169.99 -5.03 13.15 16 4 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 5 H -0.28 -5.31 7.11 56.52 0.40 -4.90 16 6 H -0.26 -5.26 7.11 56.52 0.40 -4.85 16 7 C -0.45 -11.70 8.78 -37.78 -0.33 -12.04 16 8 H 0.08 2.17 7.74 -52.48 -0.41 1.76 16 9 C 0.08 2.20 5.57 -106.79 -0.60 1.60 16 10 C -0.13 -3.28 8.69 -38.85 -0.34 -3.61 16 11 C -0.11 -2.40 10.01 -39.71 -0.40 -2.80 16 12 C -0.19 -3.90 9.73 -39.00 -0.38 -4.28 16 13 C -0.10 -2.15 4.06 -104.91 -0.43 -2.57 16 14 C 0.07 1.29 4.99 -104.91 -0.52 0.77 16 15 C -0.15 -2.33 9.71 -39.18 -0.38 -2.71 16 16 C 0.13 1.75 7.29 -39.46 -0.29 1.46 16 17 F -0.14 -1.81 17.26 2.25 0.04 -1.77 16 18 C -0.17 -2.07 10.02 -39.45 -0.40 -2.47 16 19 C -0.05 -0.62 9.42 -39.64 -0.37 -1.00 16 20 C -0.18 -3.18 5.33 -104.29 -0.56 -3.74 16 21 C 0.50 9.53 2.88 36.01 0.10 9.64 16 22 F -0.19 -3.15 15.97 2.25 0.04 -3.11 16 23 F -0.15 -3.26 11.89 2.25 0.03 -3.23 16 24 F -0.17 -3.49 16.51 2.25 0.04 -3.45 16 25 C 0.01 0.18 5.80 -38.29 -0.22 -0.04 16 26 F -0.15 -3.63 12.89 2.25 0.03 -3.60 16 27 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 28 H 0.13 3.15 6.16 -52.48 -0.32 2.83 16 29 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 30 H 0.10 1.81 8.06 -52.48 -0.42 1.39 16 31 H 0.15 2.15 8.06 -52.48 -0.42 1.73 16 32 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.15 1.59 7.15 -52.49 -0.38 1.21 16 LS Contribution 305.38 15.07 4.60 4.60 Total: -1.00 -26.70 305.38 -6.77 -33.47 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -1.93 Total: 2.76 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: -5.19 Total: -20.02 kcal Atomic # 7 Polarization: -19.42 SS G_CDS: 0.61 Total: -18.81 kcal Atomic # 9 Polarization: -15.33 SS G_CDS: 0.17 Total: -15.16 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.15 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -26.70 -6.77 -33.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240532149.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.336 kcal (2) G-P(sol) polarization free energy of solvation -26.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds