Wall clock time and date at job start Tue Mar 31 2020 15:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30851 * 1 3 3 Si 1.86804 * 119.99957 * 2 1 4 4 H 1.48499 * 109.46797 * 239.99783 * 3 2 1 5 5 H 1.48497 * 109.46937 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47137 * 119.99626 * 3 2 1 7 7 C 1.39931 * 119.99972 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99570 * 197.80403 * 7 2 1 9 9 C 1.41314 * 120.00033 * 17.80016 * 7 2 1 10 10 C 1.40777 * 120.20897 * 24.65652 * 9 7 2 11 11 C 1.37624 * 120.01979 * 179.97438 * 10 9 7 12 12 C 1.38504 * 120.45169 * 359.74653 * 11 10 9 13 13 C 1.39547 * 120.42229 * 0.51625 * 12 11 10 14 14 C 1.48389 * 120.01739 * 179.76410 * 13 12 11 15 15 C 1.39319 * 120.10911 * 64.71680 * 14 13 12 16 16 C 1.38230 * 119.85510 * 179.97438 * 15 14 13 17 17 F 1.35096 * 119.96582 * 179.72710 * 16 15 14 18 18 C 1.38563 * 120.06406 * 0.02562 * 16 15 14 19 19 C 1.38258 * 120.22180 * 359.97438 * 18 16 15 20 20 C 1.38046 * 120.14664 * 359.97438 * 19 18 16 21 21 C 1.50704 * 120.03410 * 180.02562 * 20 19 18 22 22 F 1.39899 * 109.47376 * 359.97438 * 21 20 19 23 23 F 1.39900 * 109.47115 * 119.98468 * 21 20 19 24 24 F 1.39907 * 109.46883 * 239.98210 * 21 20 19 25 25 C 1.39103 * 119.97034 * 359.48412 * 13 12 11 26 26 F 1.35099 * 120.22629 * 180.23247 * 25 13 12 27 27 H 0.96993 * 119.99841 * 0.02562 * 1 2 3 28 28 H 1.08004 * 119.98728 * 359.95875 * 10 9 7 29 29 H 1.07998 * 119.77243 * 180.02562 * 11 10 9 30 30 H 1.08005 * 119.78974 * 180.25410 * 12 11 10 31 31 H 1.08006 * 120.07542 * 0.02562 * 15 14 13 32 32 H 1.07998 * 119.88467 * 179.97438 * 18 16 15 33 33 H 1.08001 * 119.92639 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.0963 1.6963 -1.2125 5 1 1.2775 2.7464 -0.0006 6 1 3.0962 1.6965 1.2125 7 6 2.0082 -1.2118 0.0005 8 1 3.0494 -1.2340 0.2866 9 6 1.3523 -2.4065 -0.3730 10 6 0.2233 -2.3620 -1.2128 11 6 -0.4121 -3.5279 -1.5746 12 6 0.0543 -4.7511 -1.1222 13 6 1.1686 -4.8166 -0.2846 14 6 1.6575 -6.1315 0.1991 15 6 2.1612 -7.0651 -0.7040 16 6 2.6157 -8.2881 -0.2477 17 9 3.0995 -9.1972 -1.1221 18 6 2.5698 -8.5850 1.1050 19 6 2.0705 -7.6607 2.0038 20 6 1.6152 -6.4361 1.5579 21 6 1.0720 -5.4302 2.5399 22 9 1.1309 -5.9617 3.8327 23 9 1.8374 -4.2607 2.4810 24 9 -0.2569 -5.1346 2.2175 25 6 1.8243 -3.6490 0.0921 26 9 2.9063 -3.7067 0.8990 27 1 -0.4849 0.8400 -0.0004 28 1 -0.1444 -1.4125 -1.5730 29 1 -1.2776 -3.4892 -2.2194 30 1 -0.4501 -5.6598 -1.4161 31 1 2.1973 -6.8334 -1.7584 32 1 2.9253 -9.5416 1.4583 33 1 2.0374 -7.8969 3.0571 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240532149.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:11 Heat of formation + Delta-G solvation = -205.845844 kcal Electronic energy + Delta-G solvation = -28421.419665 eV Core-core repulsion = 23632.330030 eV Total energy + Delta-G solvation = -4789.089635 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.11799 -50.07007 -49.26290 -48.62375 -48.44722 -40.54310 -38.89818 -35.80392 -33.45864 -32.66773 -31.55472 -29.94468 -27.32759 -26.76763 -24.74584 -23.29743 -22.68347 -22.14935 -19.70933 -19.49877 -19.40018 -19.14122 -18.23295 -17.88828 -17.40989 -17.10072 -16.72307 -16.51254 -16.38523 -16.03885 -15.65723 -15.43120 -15.30097 -14.95032 -14.75491 -14.67581 -14.63986 -14.54482 -14.37533 -14.13325 -13.80061 -13.54349 -13.48569 -13.08002 -12.80583 -12.74792 -12.54357 -12.37872 -12.18666 -11.76109 -11.48109 -11.13064 -10.27476 -10.10036 -9.45737 -9.19339 -8.72524 -6.43239 -0.37917 -0.05699 0.75792 0.80714 1.35893 1.46119 1.49478 1.70313 2.16787 2.19868 2.58934 2.74621 2.98836 3.07485 3.42819 3.45895 3.50400 3.75706 3.91510 3.98469 4.17500 4.40590 4.46712 4.68256 4.73448 4.87159 4.89622 4.93368 5.03406 5.16205 5.24424 5.51479 5.61952 5.64929 5.96021 5.97897 6.11544 6.51959 6.74927 6.83565 8.23806 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.016781 B = 0.004728 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.137918 B = 5920.557776 C = 6469.905145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.041 3.959 3 Si 0.982 3.018 4 H -0.258 1.258 5 H -0.260 1.260 6 H -0.265 1.265 7 C -0.492 4.492 8 H 0.069 0.931 9 C 0.054 3.946 10 C -0.157 4.157 11 C -0.110 4.110 12 C -0.182 4.182 13 C -0.091 4.091 14 C 0.038 3.962 15 C -0.150 4.150 16 C 0.132 3.868 17 F -0.129 7.129 18 C -0.144 4.144 19 C -0.037 4.037 20 C -0.198 4.198 21 C 0.496 3.504 22 F -0.176 7.176 23 F -0.173 7.173 24 F -0.185 7.185 25 C -0.019 4.019 26 F -0.156 7.156 27 H 0.293 0.707 28 H 0.116 0.884 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.152 0.848 32 H 0.186 0.814 33 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.714 -13.042 1.442 13.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.175 4.175 3 Si 0.802 3.198 4 H -0.182 1.182 5 H -0.184 1.184 6 H -0.190 1.190 7 C -0.520 4.520 8 H 0.087 0.913 9 C 0.051 3.949 10 C -0.176 4.176 11 C -0.128 4.128 12 C -0.201 4.201 13 C -0.092 4.092 14 C 0.037 3.963 15 C -0.169 4.169 16 C 0.113 3.887 17 F -0.108 7.108 18 C -0.162 4.162 19 C -0.055 4.055 20 C -0.200 4.200 21 C 0.442 3.558 22 F -0.157 7.157 23 F -0.154 7.154 24 F -0.166 7.166 25 C -0.039 4.039 26 F -0.135 7.135 27 H 0.104 0.896 28 H 0.134 0.866 29 H 0.148 0.852 30 H 0.150 0.850 31 H 0.169 0.831 32 H 0.203 0.797 33 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 1.540 -12.893 1.482 13.069 hybrid contribution 0.348 1.215 0.210 1.282 sum 1.888 -11.678 1.692 11.950 Atomic orbital electron populations 1.69825 1.08772 1.31112 1.34318 1.26682 0.95551 1.04279 0.91037 0.85253 0.78922 0.75575 0.80035 1.18173 1.18421 1.18966 1.19607 0.98206 0.92469 1.41754 0.91313 1.17894 0.93728 0.91381 0.91853 1.21292 0.98311 0.98168 0.99849 1.20987 0.99593 0.92078 1.00138 1.20576 0.98255 0.97879 1.03409 1.18469 0.98720 0.89410 1.02588 1.18337 0.93786 0.92724 0.91412 1.21233 1.01809 0.92453 1.01394 1.17742 0.96325 0.86543 0.88080 1.91536 1.85211 1.65221 1.68787 1.21446 1.02319 1.02535 0.89904 1.21079 0.92767 0.89332 1.02337 1.20212 1.09782 0.97092 0.92868 1.18554 0.75867 0.81387 0.79964 1.93115 1.96210 1.86049 1.40352 1.93404 1.75035 1.50977 1.95974 1.93195 1.36719 1.94077 1.92622 1.17965 0.91212 0.94221 1.00512 1.91291 1.53648 1.97192 1.71385 0.89588 0.86630 0.85197 0.85008 0.83074 0.79664 0.80797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.80 10.96 21.83 0.24 -41.56 16 2 C 0.04 2.05 5.14 85.25 0.44 2.49 16 3 Si 0.98 38.38 29.60 68.60 2.03 40.41 16 4 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 5 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 6 H -0.27 -10.33 7.11 99.48 0.71 -9.63 16 7 C -0.49 -27.19 8.78 23.44 0.21 -26.99 16 8 H 0.07 3.83 7.74 -2.91 -0.02 3.81 16 9 C 0.05 2.96 5.57 -21.27 -0.12 2.84 16 10 C -0.16 -7.91 8.69 22.75 0.20 -7.71 16 11 C -0.11 -4.71 10.01 22.19 0.22 -4.49 16 12 C -0.18 -7.38 9.73 22.65 0.22 -7.16 16 13 C -0.09 -3.94 4.06 -20.05 -0.08 -4.02 16 14 C 0.04 1.35 4.99 -20.05 -0.10 1.25 16 15 C -0.15 -4.40 9.71 22.53 0.22 -4.18 16 16 C 0.13 3.15 7.29 22.35 0.16 3.32 16 17 F -0.13 -2.92 17.26 44.97 0.78 -2.14 16 18 C -0.14 -2.79 10.02 22.35 0.22 -2.56 16 19 C -0.04 -0.87 9.42 22.23 0.21 -0.66 16 20 C -0.20 -6.53 5.33 -19.65 -0.10 -6.63 16 21 C 0.50 18.77 2.88 71.24 0.21 18.98 16 22 F -0.18 -5.61 15.97 44.97 0.72 -4.89 16 23 F -0.17 -7.90 11.89 44.97 0.53 -7.37 16 24 F -0.18 -7.64 16.51 44.97 0.74 -6.90 16 25 C -0.02 -0.96 5.80 23.11 0.13 -0.83 16 26 F -0.16 -8.05 12.89 44.97 0.58 -7.47 16 27 H 0.29 13.48 8.30 -92.71 -0.77 12.71 16 28 H 0.12 6.01 6.16 -2.91 -0.02 5.99 16 29 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 30 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16 31 H 0.15 4.17 8.06 -2.91 -0.02 4.15 16 32 H 0.19 2.06 8.06 -2.91 -0.02 2.04 16 33 H 0.17 3.01 7.15 -2.91 -0.02 2.99 16 Total: -1.00 -61.74 305.38 8.85 -52.89 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 1.20 Total: 13.38 kcal Atomic # 6 Polarization: -38.38 SS G_CDS: 2.03 Total: -36.35 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: 0.24 Total: -41.56 kcal Atomic # 9 Polarization: -32.12 SS G_CDS: 3.35 Total: -28.77 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 2.03 Total: 40.41 kcal Total: -61.74 8.85 -52.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240532149.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.954 kcal (2) G-P(sol) polarization free energy of solvation -61.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds