Wall clock time and date at job start Tue Mar 31 2020 15:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86807 * 119.99519 * 2 1 4 4 H 1.48499 * 109.46970 * 90.00487 * 3 2 1 5 5 H 1.48491 * 109.46809 * 210.00121 * 3 2 1 6 6 H 1.48500 * 109.47129 * 330.00111 * 3 2 1 7 7 C 1.39999 * 120.00328 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99985 * 18.47112 * 7 2 1 9 9 C 1.40951 * 119.99796 * 198.48363 * 7 2 1 10 10 C 1.40939 * 120.14089 * 29.82032 * 9 7 2 11 11 C 1.36197 * 119.90240 * 180.02562 * 10 9 7 12 12 C 1.40014 * 120.18576 * 0.02562 * 11 10 9 13 13 C 1.48006 * 119.86183 * 179.97438 * 12 11 10 14 14 C 1.39577 * 120.12906 * 238.70181 * 13 12 11 15 15 C 1.38151 * 119.82565 * 179.97438 * 14 13 12 16 16 F 1.35102 * 119.95336 * 179.97438 * 15 14 13 17 17 C 1.38631 * 120.09367 * 0.02601 * 15 14 13 18 18 C 1.38324 * 120.26192 * 359.97438 * 17 15 14 19 19 C 1.37977 * 120.17258 * 359.73889 * 18 17 15 20 20 C 1.50706 * 120.04760 * 180.28008 * 19 18 17 21 21 F 1.39900 * 109.46953 * 353.98426 * 20 19 18 22 22 F 1.39899 * 109.47057 * 113.98826 * 20 19 18 23 23 F 1.39899 * 109.46683 * 233.98763 * 20 19 18 24 24 C 1.39787 * 120.27624 * 359.95888 * 12 11 10 25 25 C 1.36578 * 120.09423 * 359.75929 * 24 12 11 26 26 F 1.35101 * 120.09166 * 180.25229 * 25 24 12 27 27 H 0.97001 * 119.99645 * 174.88075 * 1 2 3 28 28 H 1.07999 * 120.04580 * 0.02562 * 10 9 7 29 29 H 1.08000 * 119.90822 * 179.97438 * 11 10 9 30 30 H 1.07998 * 120.08836 * 359.95796 * 14 13 12 31 31 H 1.07993 * 119.86970 * 179.97438 * 17 15 14 32 32 H 1.08003 * 119.91388 * 180.02562 * 18 17 15 33 33 H 1.07998 * 119.95073 * 180.02562 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6179 0.0000 4 1 2.4896 2.0465 1.4001 5 1 3.5396 1.4404 -0.7000 6 1 1.4395 2.6527 -0.7000 7 6 2.0083 -1.2124 -0.0005 8 1 1.5100 -2.1235 -0.2973 9 6 3.3632 -1.2439 0.3864 10 6 3.8534 -0.3124 1.3236 11 6 5.1637 -0.3469 1.6937 12 6 6.0251 -1.3049 1.1454 13 6 7.4478 -1.3355 1.5522 14 6 8.4534 -1.1884 0.5955 15 6 9.7794 -1.2175 0.9823 16 9 10.7548 -1.0759 0.0584 17 6 10.1104 -1.3929 2.3170 18 6 9.1169 -1.5390 3.2683 19 6 7.7890 -1.5058 2.8949 20 6 6.7087 -1.6590 3.9345 21 9 7.2907 -1.9571 5.1713 22 9 5.9855 -0.4657 4.0348 23 9 5.8473 -2.6966 3.5623 24 6 5.5470 -2.2326 0.2155 25 6 4.2338 -2.2120 -0.1594 26 9 3.7706 -3.1119 -1.0542 27 1 -0.4850 -0.8367 -0.0750 28 1 3.1910 0.4278 1.7476 29 1 5.5395 0.3672 2.4115 30 1 8.1957 -1.0525 -0.4444 31 1 11.1481 -1.4155 2.6153 32 1 9.3811 -1.6749 4.3066 33 1 6.2159 -2.9695 -0.2038 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240532328.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:16 Heat of formation + Delta-G solvation = -200.489296 kcal Electronic energy + Delta-G solvation = -27826.530192 eV Core-core repulsion = 23037.672835 eV Total energy + Delta-G solvation = -4788.857357 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.89610 -49.04561 -47.54217 -47.48128 -47.24524 -39.39842 -37.54133 -34.24740 -32.18042 -31.54930 -29.80015 -29.43074 -25.97807 -25.01355 -22.94280 -22.01827 -21.68851 -20.44219 -18.53915 -18.34590 -18.22645 -18.11663 -17.54347 -16.22485 -15.91896 -15.72640 -15.26707 -15.22287 -14.71658 -14.40738 -14.24807 -14.13330 -14.11789 -13.74689 -13.61601 -13.49166 -13.44783 -13.30475 -13.28568 -13.05160 -12.68286 -12.51251 -11.98285 -11.59142 -11.44419 -11.25704 -10.95765 -10.77817 -10.37003 -10.07020 -9.72201 -9.36509 -9.09887 -8.93131 -8.00844 -7.84504 -7.49049 -4.82063 0.75801 1.04344 2.20423 2.39280 2.91302 3.04769 3.18879 3.32319 3.39469 3.81108 3.92677 4.08423 4.18846 4.29776 4.69162 4.70082 4.76968 4.99137 5.04882 5.27406 5.56344 5.63629 5.69857 5.82184 5.93573 5.95986 6.10300 6.23006 6.39298 6.61505 6.67000 7.00354 7.13667 7.23293 7.35986 7.41484 7.61342 8.06395 8.19378 8.39640 9.68279 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.014459 B = 0.004717 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.987700 B = 5934.223473 C = 6555.938015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.042 3.958 3 Si 1.071 2.929 4 H -0.270 1.270 5 H -0.259 1.259 6 H -0.284 1.284 7 C -0.482 4.482 8 H 0.085 0.915 9 C 0.081 3.919 10 C -0.231 4.231 11 C -0.053 4.053 12 C -0.221 4.221 13 C 0.095 3.905 14 C -0.161 4.161 15 C 0.132 3.868 16 F -0.137 7.137 17 C -0.181 4.181 18 C -0.041 4.041 19 C -0.205 4.205 20 C 0.515 3.485 21 F -0.187 7.187 22 F -0.170 7.170 23 F -0.165 7.165 24 C -0.070 4.070 25 C -0.020 4.020 26 F -0.158 7.158 27 H 0.292 0.708 28 H 0.117 0.883 29 H 0.119 0.881 30 H 0.145 0.855 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.797 -0.088 5.464 15.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.181 4.181 3 Si 0.895 3.105 4 H -0.196 1.196 5 H -0.183 1.183 6 H -0.211 1.211 7 C -0.508 4.508 8 H 0.103 0.897 9 C 0.077 3.923 10 C -0.250 4.250 11 C -0.071 4.071 12 C -0.223 4.223 13 C 0.094 3.906 14 C -0.180 4.180 15 C 0.113 3.887 16 F -0.115 7.115 17 C -0.199 4.199 18 C -0.059 4.059 19 C -0.207 4.207 20 C 0.461 3.539 21 F -0.169 7.169 22 F -0.151 7.151 23 F -0.146 7.146 24 C -0.089 4.089 25 C -0.039 4.039 26 F -0.137 7.137 27 H 0.104 0.896 28 H 0.135 0.865 29 H 0.137 0.863 30 H 0.163 0.837 31 H 0.158 0.842 32 H 0.160 0.840 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 14.422 1.460 5.460 15.490 hybrid contribution -0.059 -2.075 -0.199 2.085 sum 14.363 -0.615 5.261 15.308 Atomic orbital electron populations 1.70520 1.08104 1.33712 1.28696 1.27518 0.95603 1.04729 0.90216 0.83616 0.75796 0.72593 0.78457 1.19624 1.18318 1.21102 1.20772 0.95111 0.97419 1.37545 0.89666 1.17855 0.93124 0.90788 0.90580 1.20635 0.95869 1.05033 1.03435 1.20886 0.93193 0.96416 0.96588 1.17563 0.90341 1.05032 1.09318 1.18374 0.93697 0.88761 0.89720 1.21368 0.89919 1.05167 1.01536 1.17789 0.85254 0.99277 0.86404 1.91512 1.61690 1.92864 1.65453 1.20977 1.00655 1.07242 0.91057 1.20705 0.90348 0.94654 1.00217 1.20211 0.93303 1.13245 0.93934 1.18062 0.81600 0.74562 0.79719 1.93121 1.84289 1.93401 1.46065 1.93162 1.79378 1.46653 1.95950 1.93261 1.71701 1.58508 1.91113 1.20208 0.93879 0.98098 0.96757 1.17317 0.92289 0.96637 0.97692 1.91317 1.89661 1.66322 1.66406 0.89648 0.86535 0.86346 0.83678 0.84208 0.83953 0.87400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.01 13.65 55.55 0.76 -19.25 16 2 C 0.04 1.04 5.40 -17.32 -0.09 0.95 16 3 Si 1.07 22.72 24.97 -169.99 -4.24 18.47 16 4 H -0.27 -5.37 6.44 56.52 0.36 -5.01 16 5 H -0.26 -5.44 7.08 56.52 0.40 -5.04 16 6 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.48 -12.48 9.10 -37.90 -0.34 -12.82 16 8 H 0.09 2.32 7.96 -52.49 -0.42 1.90 16 9 C 0.08 1.99 5.11 -106.73 -0.55 1.44 16 10 C -0.23 -5.22 7.24 -39.29 -0.28 -5.51 16 11 C -0.05 -1.07 7.66 -39.65 -0.30 -1.37 16 12 C -0.22 -4.26 4.01 -104.65 -0.42 -4.68 16 13 C 0.09 1.53 5.34 -104.89 -0.56 0.97 16 14 C -0.16 -2.30 9.64 -39.11 -0.38 -2.68 16 15 C 0.13 1.67 7.29 -39.47 -0.29 1.38 16 16 F -0.14 -1.72 17.26 2.25 0.04 -1.68 16 17 C -0.18 -1.97 10.02 -39.40 -0.39 -2.36 16 18 C -0.04 -0.48 9.42 -39.65 -0.37 -0.85 16 19 C -0.21 -3.01 5.41 -104.22 -0.56 -3.57 16 20 C 0.51 8.05 2.80 36.01 0.10 8.15 16 21 F -0.19 -2.59 15.99 2.25 0.04 -2.55 16 22 F -0.17 -2.81 13.31 2.25 0.03 -2.78 16 23 F -0.16 -2.96 16.01 2.25 0.04 -2.93 16 24 C -0.07 -1.44 9.55 -39.60 -0.38 -1.82 16 25 C -0.02 -0.46 7.26 -39.07 -0.28 -0.74 16 26 F -0.16 -3.79 16.75 2.25 0.04 -3.75 16 27 H 0.29 7.18 8.73 -40.82 -0.36 6.83 16 28 H 0.12 2.59 4.58 -52.49 -0.24 2.35 16 29 H 0.12 2.18 5.80 -52.49 -0.30 1.87 16 30 H 0.15 1.99 8.06 -52.49 -0.42 1.56 16 31 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 32 H 0.14 1.31 7.17 -52.48 -0.38 0.93 16 33 H 0.11 1.97 8.06 -52.49 -0.42 1.55 16 LS Contribution 302.21 15.07 4.55 4.55 Total: -1.00 -25.53 302.21 -5.66 -31.19 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -1.80 Total: 2.23 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: -5.11 Total: -23.51 kcal Atomic # 7 Polarization: -20.01 SS G_CDS: 0.76 Total: -19.25 kcal Atomic # 9 Polarization: -13.86 SS G_CDS: 0.18 Total: -13.69 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -4.24 Total: 18.47 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -25.53 -5.66 -31.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240532328.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.296 kcal (2) G-P(sol) polarization free energy of solvation -25.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds