Wall clock time and date at job start Tue Mar 31 2020 15:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86807 * 119.99519 * 2 1 4 4 H 1.48499 * 109.46970 * 90.00487 * 3 2 1 5 5 H 1.48491 * 109.46809 * 210.00121 * 3 2 1 6 6 H 1.48500 * 109.47129 * 330.00111 * 3 2 1 7 7 C 1.39999 * 120.00328 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99985 * 18.47112 * 7 2 1 9 9 C 1.40951 * 119.99796 * 198.48363 * 7 2 1 10 10 C 1.40939 * 120.14089 * 29.82032 * 9 7 2 11 11 C 1.36197 * 119.90240 * 180.02562 * 10 9 7 12 12 C 1.40014 * 120.18576 * 0.02562 * 11 10 9 13 13 C 1.48006 * 119.86183 * 179.97438 * 12 11 10 14 14 C 1.39577 * 120.12906 * 238.70181 * 13 12 11 15 15 C 1.38151 * 119.82565 * 179.97438 * 14 13 12 16 16 F 1.35102 * 119.95336 * 179.97438 * 15 14 13 17 17 C 1.38631 * 120.09367 * 0.02601 * 15 14 13 18 18 C 1.38324 * 120.26192 * 359.97438 * 17 15 14 19 19 C 1.37977 * 120.17258 * 359.73889 * 18 17 15 20 20 C 1.50706 * 120.04760 * 180.28008 * 19 18 17 21 21 F 1.39900 * 109.46953 * 353.98426 * 20 19 18 22 22 F 1.39899 * 109.47057 * 113.98826 * 20 19 18 23 23 F 1.39899 * 109.46683 * 233.98763 * 20 19 18 24 24 C 1.39787 * 120.27624 * 359.95888 * 12 11 10 25 25 C 1.36578 * 120.09423 * 359.75929 * 24 12 11 26 26 F 1.35101 * 120.09166 * 180.25229 * 25 24 12 27 27 H 0.97001 * 119.99645 * 174.88075 * 1 2 3 28 28 H 1.07999 * 120.04580 * 0.02562 * 10 9 7 29 29 H 1.08000 * 119.90822 * 179.97438 * 11 10 9 30 30 H 1.07998 * 120.08836 * 359.95796 * 14 13 12 31 31 H 1.07993 * 119.86970 * 179.97438 * 17 15 14 32 32 H 1.08003 * 119.91388 * 180.02562 * 18 17 15 33 33 H 1.07998 * 119.95073 * 180.02562 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6179 0.0000 4 1 2.4896 2.0465 1.4001 5 1 3.5396 1.4404 -0.7000 6 1 1.4395 2.6527 -0.7000 7 6 2.0083 -1.2124 -0.0005 8 1 1.5100 -2.1235 -0.2973 9 6 3.3632 -1.2439 0.3864 10 6 3.8534 -0.3124 1.3236 11 6 5.1637 -0.3469 1.6937 12 6 6.0251 -1.3049 1.1454 13 6 7.4478 -1.3355 1.5522 14 6 8.4534 -1.1884 0.5955 15 6 9.7794 -1.2175 0.9823 16 9 10.7548 -1.0759 0.0584 17 6 10.1104 -1.3929 2.3170 18 6 9.1169 -1.5390 3.2683 19 6 7.7890 -1.5058 2.8949 20 6 6.7087 -1.6590 3.9345 21 9 7.2907 -1.9571 5.1713 22 9 5.9855 -0.4657 4.0348 23 9 5.8473 -2.6966 3.5623 24 6 5.5470 -2.2326 0.2155 25 6 4.2338 -2.2120 -0.1594 26 9 3.7706 -3.1119 -1.0542 27 1 -0.4850 -0.8367 -0.0750 28 1 3.1910 0.4278 1.7476 29 1 5.5395 0.3672 2.4115 30 1 8.1957 -1.0525 -0.4444 31 1 11.1481 -1.4155 2.6153 32 1 9.3811 -1.6749 4.3066 33 1 6.2159 -2.9695 -0.2038 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240532328.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:15 Heat of formation + Delta-G solvation = -211.708159 kcal Electronic energy + Delta-G solvation = -27827.016679 eV Core-core repulsion = 23037.672835 eV Total energy + Delta-G solvation = -4789.343844 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.13734 -50.02764 -49.41842 -48.68084 -48.56175 -40.65478 -39.12309 -35.98508 -33.62666 -32.65286 -31.44547 -30.99294 -27.38008 -26.37048 -24.37431 -23.38897 -23.13792 -22.01305 -20.33781 -19.55139 -19.44465 -19.39245 -18.78630 -17.42186 -17.33599 -16.99847 -16.86556 -16.65058 -16.27317 -15.87220 -15.80749 -15.47778 -15.38442 -15.14710 -15.05809 -14.88765 -14.74402 -14.60790 -14.47705 -14.32930 -14.27807 -13.97732 -13.43448 -13.00888 -12.87043 -12.76515 -12.48150 -12.28495 -12.00561 -11.77960 -11.51044 -11.04043 -10.26405 -10.07955 -9.70409 -9.63105 -9.29342 -6.73420 -0.34725 -0.03279 0.55621 0.61634 1.33532 1.50185 1.71181 1.72982 2.09931 2.22694 2.44560 2.75544 3.04389 3.08667 3.19234 3.44516 3.51741 3.77513 3.87113 4.02385 4.06914 4.21906 4.31668 4.56533 4.63716 4.75389 4.83581 4.96030 4.96822 5.14291 5.21981 5.33992 5.36967 5.62936 5.65269 5.69377 5.81581 6.14722 6.39342 6.57516 7.80739 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.014459 B = 0.004717 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.987700 B = 5934.223473 C = 6555.938015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.015 3.985 3 Si 1.097 2.903 4 H -0.246 1.246 5 H -0.258 1.258 6 H -0.274 1.274 7 C -0.530 4.530 8 H 0.047 0.953 9 C 0.063 3.937 10 C -0.232 4.232 11 C -0.058 4.058 12 C -0.184 4.184 13 C 0.063 3.937 14 C -0.160 4.160 15 C 0.132 3.868 16 F -0.134 7.134 17 C -0.152 4.152 18 C -0.032 4.032 19 C -0.205 4.205 20 C 0.510 3.490 21 F -0.174 7.174 22 F -0.177 7.177 23 F -0.184 7.184 24 C -0.070 4.070 25 C -0.046 4.046 26 F -0.168 7.168 27 H 0.282 0.718 28 H 0.120 0.880 29 H 0.144 0.856 30 H 0.146 0.854 31 H 0.179 0.821 32 H 0.174 0.826 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.894 0.797 7.299 21.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.201 4.201 3 Si 0.916 3.084 4 H -0.170 1.170 5 H -0.182 1.182 6 H -0.200 1.200 7 C -0.558 4.558 8 H 0.066 0.934 9 C 0.059 3.941 10 C -0.251 4.251 11 C -0.076 4.076 12 C -0.185 4.185 13 C 0.062 3.938 14 C -0.179 4.179 15 C 0.113 3.887 16 F -0.113 7.113 17 C -0.170 4.170 18 C -0.049 4.049 19 C -0.207 4.207 20 C 0.456 3.544 21 F -0.155 7.155 22 F -0.159 7.159 23 F -0.165 7.165 24 C -0.089 4.089 25 C -0.066 4.066 26 F -0.148 7.148 27 H 0.093 0.907 28 H 0.137 0.863 29 H 0.162 0.838 30 H 0.164 0.836 31 H 0.197 0.803 32 H 0.192 0.808 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 19.529 2.328 7.306 20.981 hybrid contribution -1.128 -2.490 -0.638 2.807 sum 18.401 -0.162 6.668 19.573 Atomic orbital electron populations 1.70586 1.08552 1.32977 1.32181 1.28512 0.95704 1.06753 0.89086 0.83346 0.75011 0.70131 0.79917 1.17047 1.18239 1.20035 1.20581 0.96438 0.96782 1.42017 0.93433 1.18037 0.92826 0.91974 0.91238 1.20788 0.97074 1.04508 1.02744 1.21228 0.92439 0.97077 0.96833 1.17970 0.92247 1.02273 1.06000 1.18138 0.91908 0.92686 0.91053 1.21325 0.90515 1.04836 1.01213 1.17833 0.84566 0.99084 0.87244 1.91533 1.61340 1.92782 1.65610 1.21423 1.02444 1.03441 0.89707 1.21050 0.88768 0.93111 1.02007 1.20201 0.94331 1.13518 0.92605 1.18282 0.81605 0.73854 0.80640 1.93145 1.83879 1.93250 1.45252 1.93134 1.79719 1.46987 1.96011 1.93232 1.72524 1.59415 1.91373 1.20505 0.92837 0.98746 0.96837 1.17703 0.93540 0.96959 0.98387 1.91279 1.89989 1.66633 1.66863 0.90750 0.86259 0.83819 0.83627 0.80318 0.80828 0.84964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.40 13.65 21.84 0.30 -44.10 16 2 C 0.02 0.82 5.40 85.27 0.46 1.28 16 3 Si 1.10 46.40 24.97 68.60 1.71 48.11 16 4 H -0.25 -9.33 6.44 99.48 0.64 -8.69 16 5 H -0.26 -10.72 7.08 99.48 0.70 -10.01 16 6 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 7 C -0.53 -29.58 9.10 23.36 0.21 -29.37 16 8 H 0.05 2.88 7.96 -2.91 -0.02 2.86 16 9 C 0.06 3.21 5.11 -21.23 -0.11 3.10 16 10 C -0.23 -10.50 7.24 22.46 0.16 -10.34 16 11 C -0.06 -2.25 7.66 22.23 0.17 -2.08 16 12 C -0.18 -6.70 4.01 -19.88 -0.08 -6.78 16 13 C 0.06 1.80 5.34 -20.04 -0.11 1.69 16 14 C -0.16 -3.94 9.64 22.57 0.22 -3.73 16 15 C 0.13 2.66 7.29 22.34 0.16 2.82 16 16 F -0.13 -2.75 17.26 44.97 0.78 -1.97 16 17 C -0.15 -2.31 10.02 22.38 0.22 -2.09 16 18 C -0.03 -0.54 9.42 22.23 0.21 -0.33 16 19 C -0.20 -5.12 5.41 -19.60 -0.11 -5.23 16 20 C 0.51 14.34 2.80 71.24 0.20 14.54 16 21 F -0.17 -4.13 15.99 44.97 0.72 -3.41 16 22 F -0.18 -5.35 13.31 44.97 0.60 -4.75 16 23 F -0.18 -6.29 16.01 44.97 0.72 -5.57 16 24 C -0.07 -2.83 9.55 22.26 0.21 -2.61 16 25 C -0.05 -2.23 7.26 22.60 0.16 -2.06 16 26 F -0.17 -8.47 16.75 44.97 0.75 -7.72 16 27 H 0.28 15.18 8.73 -92.71 -0.81 14.37 16 28 H 0.12 5.27 4.58 -2.91 -0.01 5.26 16 29 H 0.14 4.87 5.80 -2.91 -0.02 4.86 16 30 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 31 H 0.18 1.47 8.06 -2.91 -0.02 1.44 16 32 H 0.17 1.99 7.17 -2.91 -0.02 1.96 16 33 H 0.13 4.61 8.06 -2.91 -0.02 4.58 16 Total: -1.00 -59.46 302.21 8.67 -50.79 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: 1.10 Total: 9.82 kcal Atomic # 6 Polarization: -43.17 SS G_CDS: 1.99 Total: -41.18 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: 0.30 Total: -44.10 kcal Atomic # 9 Polarization: -27.00 SS G_CDS: 3.57 Total: -23.43 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.71 Total: 48.11 kcal Total: -59.46 8.67 -50.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240532328.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.918 kcal (2) G-P(sol) polarization free energy of solvation -59.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds