Wall clock time and date at job start Tue Mar 31 2020 15:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30782 * 1 3 3 Si 1.86803 * 119.99806 * 2 1 4 4 H 1.48494 * 109.47295 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47109 * 300.00491 * 3 2 1 6 6 H 1.48499 * 109.46862 * 60.00202 * 3 2 1 7 7 C 1.40062 * 120.00190 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00063 * 164.26505 * 7 2 1 9 9 C 1.40888 * 119.99632 * 344.25755 * 7 2 1 10 10 C 1.40708 * 120.31812 * 334.03983 * 9 7 2 11 11 C 1.37644 * 119.84260 * 179.97438 * 10 9 7 12 12 F 1.35110 * 119.74791 * 179.97438 * 11 10 9 13 13 C 1.39177 * 120.50408 * 359.97438 * 11 10 9 14 14 C 1.38026 * 120.64373 * 359.71924 * 13 11 10 15 15 C 1.39133 * 120.13960 * 0.56067 * 14 13 11 16 16 C 1.47858 * 120.25342 * 179.71796 * 15 14 13 17 17 C 1.39643 * 120.13431 * 129.72401 * 16 15 14 18 18 C 1.38133 * 119.81902 * 179.97438 * 17 16 15 19 19 F 1.35101 * 119.94797 * 180.28078 * 18 17 16 20 20 C 1.38638 * 120.09647 * 0.02562 * 18 17 16 21 21 C 1.38333 * 120.28387 * 0.02562 * 20 18 17 22 22 C 1.50696 * 119.91612 * 180.02562 * 21 20 18 23 23 F 1.39901 * 109.46910 * 0.02562 * 22 21 20 24 24 F 1.39898 * 109.46865 * 120.00055 * 22 21 20 25 25 F 1.39899 * 109.47053 * 240.00036 * 22 21 20 26 26 C 1.37956 * 120.17120 * 359.97438 * 21 20 18 27 27 H 0.96996 * 120.00466 * 359.97438 * 1 2 3 28 28 H 1.07995 * 120.08138 * 359.95344 * 10 9 7 29 29 H 1.08002 * 119.67787 * 180.02562 * 13 11 10 30 30 H 1.08005 * 119.93118 * 180.28442 * 14 13 11 31 31 H 1.07998 * 120.09182 * 359.95792 * 17 16 15 32 32 H 1.08004 * 119.85716 * 179.97438 * 20 18 17 33 33 H 1.08003 * 120.05047 * 180.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2418 1.6178 0.0000 4 1 3.7017 1.3465 -0.0006 5 1 1.8829 2.3965 -1.2124 6 1 1.8830 2.3964 1.2125 7 6 2.0082 -1.2130 -0.0005 8 1 3.0578 -1.2303 -0.2542 9 6 1.3433 -2.4103 0.3300 10 6 0.2051 -2.3858 1.1568 11 6 -0.4372 -3.5614 1.4730 12 9 -1.5297 -3.5358 2.2675 13 6 0.0302 -4.7764 0.9806 14 6 1.1411 -4.8235 0.1629 15 6 1.8144 -3.6520 -0.1691 16 6 3.0084 -3.7003 -1.0399 17 6 3.1018 -2.8569 -2.1489 18 6 4.2204 -2.9070 -2.9577 19 9 4.3160 -2.0883 -4.0281 20 6 5.2475 -3.7926 -2.6696 21 6 5.1588 -4.6306 -1.5726 22 6 6.2804 -5.5896 -1.2668 23 9 7.2901 -5.4469 -2.2246 24 9 6.7992 -5.3108 0.0022 25 9 5.7932 -6.9007 -1.2938 26 6 4.0468 -4.5901 -0.7572 27 1 -0.4850 0.8400 0.0004 28 1 -0.1636 -1.4469 1.5426 29 1 -0.4843 -5.6907 1.2369 30 1 1.4912 -5.7722 -0.2165 31 1 2.3014 -2.1675 -2.3739 32 1 6.1202 -3.8288 -3.3048 33 1 3.9798 -5.2450 0.0990 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241082403.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:20 Heat of formation + Delta-G solvation = -211.385706 kcal Electronic energy + Delta-G solvation = -27137.015143 eV Core-core repulsion = 22347.685282 eV Total energy + Delta-G solvation = -4789.329861 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.09684 -48.64506 -47.83093 -47.62550 -47.54072 -39.17764 -37.25836 -34.03678 -32.33511 -30.87685 -30.02752 -28.13376 -26.07735 -25.65032 -22.90861 -22.05377 -21.31908 -20.31225 -18.41402 -18.34702 -18.22632 -17.79195 -16.20523 -16.13502 -15.96380 -15.74654 -15.34519 -15.07001 -14.72663 -14.71633 -14.48539 -14.45150 -14.23998 -14.00244 -13.73296 -13.71827 -13.21203 -13.02390 -12.88352 -12.56307 -12.47275 -11.96537 -11.86742 -11.82472 -11.46334 -11.29277 -11.16900 -10.85705 -10.59525 -10.21706 -9.91582 -9.50628 -8.86817 -8.58525 -7.85230 -7.43208 -7.08668 -4.76879 1.09510 1.29572 2.38831 2.55406 2.72025 2.91794 2.95692 2.97808 3.67426 3.69104 3.75497 4.07912 4.24247 4.51243 4.58671 4.99873 5.20121 5.22268 5.33781 5.46009 5.56121 5.82431 5.96121 6.13536 6.22056 6.23477 6.38782 6.60368 6.69116 6.78229 6.94068 7.04199 7.20995 7.39772 7.49653 7.61858 7.87335 8.20938 8.45348 8.49379 9.79204 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.011087 B = 0.004892 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.982436 B = 5722.387088 C = 7366.555517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.076 3.924 3 Si 0.908 3.092 4 H -0.256 1.256 5 H -0.270 1.270 6 H -0.268 1.268 7 C -0.443 4.443 8 H 0.089 0.911 9 C 0.151 3.849 10 C -0.194 4.194 11 C 0.114 3.886 12 F -0.165 7.165 13 C -0.276 4.276 14 C -0.037 4.037 15 C -0.208 4.208 16 C 0.054 3.946 17 C -0.103 4.103 18 C 0.094 3.906 19 F -0.139 7.139 20 C -0.137 4.137 21 C -0.160 4.160 22 C 0.512 3.488 23 F -0.180 7.180 24 F -0.176 7.176 25 F -0.177 7.177 26 C -0.092 4.092 27 H 0.288 0.712 28 H 0.133 0.867 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.153 0.847 32 H 0.140 0.860 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.524 -4.685 -3.122 9.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.146 4.146 3 Si 0.731 3.269 4 H -0.179 1.179 5 H -0.195 1.195 6 H -0.193 1.193 7 C -0.471 4.471 8 H 0.107 0.893 9 C 0.148 3.852 10 C -0.214 4.214 11 C 0.095 3.905 12 F -0.144 7.144 13 C -0.296 4.296 14 C -0.055 4.055 15 C -0.210 4.210 16 C 0.053 3.947 17 C -0.121 4.121 18 C 0.075 3.925 19 F -0.118 7.118 20 C -0.156 4.156 21 C -0.161 4.161 22 C 0.458 3.542 23 F -0.162 7.162 24 F -0.157 7.157 25 F -0.159 7.159 26 C -0.110 4.110 27 H 0.099 0.901 28 H 0.151 0.849 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.170 0.830 32 H 0.158 0.842 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 7.305 -4.508 -3.141 9.141 hybrid contribution 0.273 0.769 -0.012 0.816 sum 7.577 -3.739 -3.153 9.019 Atomic orbital electron populations 1.69767 1.07777 1.30211 1.31903 1.26041 0.94804 1.01842 0.91872 0.86222 0.81237 0.80332 0.79081 1.17894 1.19467 1.19262 1.19701 0.97826 0.90542 1.39000 0.89258 1.17225 0.89539 0.91141 0.87341 1.21279 1.00381 0.96107 1.03630 1.17801 0.84671 0.95242 0.92809 1.91356 1.52910 1.97606 1.72484 1.20219 1.03515 0.95421 1.10460 1.20384 0.93971 0.95944 0.95196 1.18384 1.00311 0.94226 1.08032 1.18482 0.92868 0.91376 0.91927 1.21746 0.97216 0.99835 0.93345 1.17393 0.95995 0.92424 0.86725 1.91492 1.96406 1.70563 1.53304 1.20674 0.99716 0.96918 0.98333 1.19474 0.95922 1.00614 1.00102 1.18248 0.81848 0.79862 0.74211 1.93145 1.63042 1.95662 1.64326 1.93218 1.88009 1.93517 1.40975 1.93208 1.87797 1.38681 1.96171 1.21108 0.91577 0.99660 0.98699 0.90065 0.84925 0.87764 0.87836 0.82979 0.84242 0.84753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.84 10.93 55.55 0.61 -17.23 16 2 C 0.08 1.68 5.17 -17.31 -0.09 1.59 16 3 Si 0.91 16.91 29.59 -169.99 -5.03 11.88 16 4 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 5 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 6 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 7 C -0.44 -10.10 7.13 -37.90 -0.27 -10.37 16 8 H 0.09 1.99 6.58 -52.49 -0.35 1.64 16 9 C 0.15 3.49 5.56 -106.57 -0.59 2.90 16 10 C -0.19 -4.62 8.64 -38.87 -0.34 -4.96 16 11 C 0.11 2.58 7.28 -39.45 -0.29 2.29 16 12 F -0.16 -3.64 17.26 2.25 0.04 -3.60 16 13 C -0.28 -5.68 10.01 -39.31 -0.39 -6.07 16 14 C -0.04 -0.72 9.50 -39.33 -0.37 -1.09 16 15 C -0.21 -4.32 5.52 -104.24 -0.58 -4.90 16 16 C 0.05 0.99 4.92 -104.91 -0.52 0.47 16 17 C -0.10 -1.85 7.95 -39.10 -0.31 -2.16 16 18 C 0.09 1.53 7.29 -39.47 -0.29 1.24 16 19 F -0.14 -2.25 17.26 2.25 0.04 -2.21 16 20 C -0.14 -2.02 9.41 -39.40 -0.37 -2.39 16 21 C -0.16 -2.38 5.37 -104.69 -0.56 -2.94 16 22 C 0.51 6.99 3.31 36.00 0.12 7.11 16 23 F -0.18 -2.35 15.96 2.25 0.04 -2.32 16 24 F -0.18 -2.48 17.23 2.25 0.04 -2.44 16 25 F -0.18 -2.41 17.23 2.25 0.04 -2.37 16 26 C -0.09 -1.49 9.06 -39.16 -0.35 -1.84 16 27 H 0.29 6.03 8.29 -40.82 -0.34 5.70 16 28 H 0.13 3.30 6.19 -52.49 -0.32 2.97 16 29 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 30 H 0.10 1.74 8.04 -52.48 -0.42 1.31 16 31 H 0.15 2.90 7.30 -52.49 -0.38 2.52 16 32 H 0.14 1.77 7.14 -52.48 -0.37 1.39 16 33 H 0.13 2.02 8.05 -52.48 -0.42 1.60 16 LS Contribution 312.57 15.07 4.71 4.71 Total: -1.00 -23.03 312.57 -6.55 -29.58 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -1.83 Total: 5.13 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: -5.20 Total: -21.13 kcal Atomic # 7 Polarization: -17.84 SS G_CDS: 0.61 Total: -17.23 kcal Atomic # 9 Polarization: -13.13 SS G_CDS: 0.19 Total: -12.94 kcal Atomic # 14 Polarization: 16.91 SS G_CDS: -5.03 Total: 11.88 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -23.03 -6.55 -29.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241082403.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.804 kcal (2) G-P(sol) polarization free energy of solvation -23.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds