Wall clock time and date at job start Tue Mar 31 2020 15:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30782 * 1 3 3 Si 1.86803 * 119.99806 * 2 1 4 4 H 1.48494 * 109.47295 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47109 * 300.00491 * 3 2 1 6 6 H 1.48499 * 109.46862 * 60.00202 * 3 2 1 7 7 C 1.40062 * 120.00190 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00063 * 164.26505 * 7 2 1 9 9 C 1.40888 * 119.99632 * 344.25755 * 7 2 1 10 10 C 1.40708 * 120.31812 * 334.03983 * 9 7 2 11 11 C 1.37644 * 119.84260 * 179.97438 * 10 9 7 12 12 F 1.35110 * 119.74791 * 179.97438 * 11 10 9 13 13 C 1.39177 * 120.50408 * 359.97438 * 11 10 9 14 14 C 1.38026 * 120.64373 * 359.71924 * 13 11 10 15 15 C 1.39133 * 120.13960 * 0.56067 * 14 13 11 16 16 C 1.47858 * 120.25342 * 179.71796 * 15 14 13 17 17 C 1.39643 * 120.13431 * 129.72401 * 16 15 14 18 18 C 1.38133 * 119.81902 * 179.97438 * 17 16 15 19 19 F 1.35101 * 119.94797 * 180.28078 * 18 17 16 20 20 C 1.38638 * 120.09647 * 0.02562 * 18 17 16 21 21 C 1.38333 * 120.28387 * 0.02562 * 20 18 17 22 22 C 1.50696 * 119.91612 * 180.02562 * 21 20 18 23 23 F 1.39901 * 109.46910 * 0.02562 * 22 21 20 24 24 F 1.39898 * 109.46865 * 120.00055 * 22 21 20 25 25 F 1.39899 * 109.47053 * 240.00036 * 22 21 20 26 26 C 1.37956 * 120.17120 * 359.97438 * 21 20 18 27 27 H 0.96996 * 120.00466 * 359.97438 * 1 2 3 28 28 H 1.07995 * 120.08138 * 359.95344 * 10 9 7 29 29 H 1.08002 * 119.67787 * 180.02562 * 13 11 10 30 30 H 1.08005 * 119.93118 * 180.28442 * 14 13 11 31 31 H 1.07998 * 120.09182 * 359.95792 * 17 16 15 32 32 H 1.08004 * 119.85716 * 179.97438 * 20 18 17 33 33 H 1.08003 * 120.05047 * 180.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2418 1.6178 0.0000 4 1 3.7017 1.3465 -0.0006 5 1 1.8829 2.3965 -1.2124 6 1 1.8830 2.3964 1.2125 7 6 2.0082 -1.2130 -0.0005 8 1 3.0578 -1.2303 -0.2542 9 6 1.3433 -2.4103 0.3300 10 6 0.2051 -2.3858 1.1568 11 6 -0.4372 -3.5614 1.4730 12 9 -1.5297 -3.5358 2.2675 13 6 0.0302 -4.7764 0.9806 14 6 1.1411 -4.8235 0.1629 15 6 1.8144 -3.6520 -0.1691 16 6 3.0084 -3.7003 -1.0399 17 6 3.1018 -2.8569 -2.1489 18 6 4.2204 -2.9070 -2.9577 19 9 4.3160 -2.0883 -4.0281 20 6 5.2475 -3.7926 -2.6696 21 6 5.1588 -4.6306 -1.5726 22 6 6.2804 -5.5896 -1.2668 23 9 7.2901 -5.4469 -2.2246 24 9 6.7992 -5.3108 0.0022 25 9 5.7932 -6.9007 -1.2938 26 6 4.0468 -4.5901 -0.7572 27 1 -0.4850 0.8400 0.0004 28 1 -0.1636 -1.4469 1.5426 29 1 -0.4843 -5.6907 1.2369 30 1 1.4912 -5.7722 -0.2165 31 1 2.3014 -2.1675 -2.3739 32 1 6.1202 -3.8288 -3.3048 33 1 3.9798 -5.2450 0.0990 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241082403.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:19 Heat of formation + Delta-G solvation = -217.899769 kcal Electronic energy + Delta-G solvation = -27137.297614 eV Core-core repulsion = 22347.685282 eV Total energy + Delta-G solvation = -4789.612332 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.17263 -49.94001 -49.58951 -48.68421 -48.62405 -40.58688 -38.80968 -35.69827 -33.74030 -32.23325 -31.68432 -29.67886 -27.53568 -27.04461 -24.35587 -23.44842 -22.85700 -21.80574 -19.64874 -19.48830 -19.44118 -19.33563 -17.86819 -17.42774 -17.24734 -17.13487 -16.71822 -16.60579 -16.35806 -16.24605 -16.17596 -15.52472 -15.36327 -15.06480 -14.85740 -14.78356 -14.76403 -14.46148 -14.33845 -14.16483 -13.71281 -13.45447 -13.35629 -13.27319 -12.88589 -12.77300 -12.73076 -12.37232 -12.14135 -11.80119 -11.54556 -11.15624 -10.26320 -9.91775 -9.54531 -9.07509 -8.73366 -6.49024 -0.22141 -0.03444 0.76361 0.90440 1.37098 1.44755 1.50341 1.58736 2.13106 2.32967 2.58001 2.61941 2.95001 3.28402 3.40723 3.54074 3.73807 3.79106 3.94412 4.02066 4.21491 4.39531 4.48363 4.53814 4.87498 4.93397 4.94608 5.00243 5.06384 5.19997 5.43648 5.56046 5.62253 5.73455 5.85116 5.93892 6.18454 6.49877 6.75867 6.79602 8.16849 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.011087 B = 0.004892 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.982436 B = 5722.387088 C = 7366.555517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.041 3.959 3 Si 0.969 3.031 4 H -0.255 1.255 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.462 4.462 8 H 0.089 0.911 9 C 0.126 3.874 10 C -0.222 4.222 11 C 0.098 3.902 12 F -0.167 7.167 13 C -0.274 4.274 14 C -0.035 4.035 15 C -0.203 4.203 16 C 0.033 3.967 17 C -0.111 4.111 18 C 0.091 3.909 19 F -0.139 7.139 20 C -0.119 4.119 21 C -0.157 4.157 22 C 0.523 3.477 23 F -0.173 7.173 24 F -0.177 7.177 25 F -0.174 7.174 26 C -0.083 4.083 27 H 0.293 0.707 28 H 0.112 0.888 29 H 0.129 0.871 30 H 0.139 0.861 31 H 0.132 0.868 32 H 0.167 0.833 33 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.639 -5.992 -3.919 12.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.177 4.177 3 Si 0.789 3.211 4 H -0.178 1.178 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.490 4.490 8 H 0.107 0.893 9 C 0.123 3.877 10 C -0.242 4.242 11 C 0.079 3.921 12 F -0.146 7.146 13 C -0.294 4.294 14 C -0.053 4.053 15 C -0.205 4.205 16 C 0.033 3.967 17 C -0.129 4.129 18 C 0.072 3.928 19 F -0.117 7.117 20 C -0.137 4.137 21 C -0.159 4.159 22 C 0.468 3.532 23 F -0.155 7.155 24 F -0.158 7.158 25 F -0.155 7.155 26 C -0.101 4.101 27 H 0.104 0.896 28 H 0.130 0.870 29 H 0.147 0.853 30 H 0.157 0.843 31 H 0.150 0.850 32 H 0.184 0.816 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 9.418 -5.828 -3.939 11.755 hybrid contribution -0.329 1.048 0.175 1.112 sum 9.089 -4.780 -3.764 10.938 Atomic orbital electron populations 1.69822 1.09047 1.31140 1.33270 1.26735 0.95309 1.04454 0.91160 0.85324 0.79864 0.76743 0.79121 1.17818 1.18959 1.18960 1.19796 0.97827 0.91183 1.40181 0.89332 1.17524 0.89796 0.92578 0.87754 1.21208 1.01824 0.95880 1.05302 1.18042 0.84837 0.95867 0.93327 1.91339 1.52997 1.97660 1.72581 1.20537 1.03651 0.95366 1.09836 1.20759 0.93183 0.97011 0.94391 1.18678 1.00831 0.93776 1.07210 1.18357 0.93104 0.93059 0.92210 1.21594 0.97573 0.99680 0.94103 1.17370 0.95930 0.92899 0.86596 1.91494 1.96375 1.70672 1.53204 1.20939 0.99612 0.95190 0.97978 1.19577 0.95923 1.00685 0.99675 1.17939 0.81446 0.79545 0.74239 1.93166 1.62640 1.95618 1.64033 1.93226 1.87960 1.93534 1.41110 1.93222 1.87790 1.38378 1.96155 1.21171 0.91139 0.98761 0.99048 0.89603 0.87044 0.85296 0.84336 0.85038 0.81566 0.83407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.96 10.93 21.85 0.24 -38.72 16 2 C 0.04 1.89 5.17 85.29 0.44 2.33 16 3 Si 0.97 35.24 29.59 68.60 2.03 37.27 16 4 H -0.25 -9.13 7.11 99.48 0.71 -8.42 16 5 H -0.26 -9.34 7.11 99.48 0.71 -8.64 16 6 H -0.26 -9.42 7.11 99.48 0.71 -8.72 16 7 C -0.46 -21.73 7.13 23.36 0.17 -21.56 16 8 H 0.09 4.04 6.58 -2.91 -0.02 4.02 16 9 C 0.13 6.03 5.56 -21.13 -0.12 5.91 16 10 C -0.22 -11.02 8.64 22.73 0.20 -10.83 16 11 C 0.10 4.52 7.28 22.35 0.16 4.68 16 12 F -0.17 -7.51 17.26 44.97 0.78 -6.73 16 13 C -0.27 -10.96 10.01 22.45 0.22 -10.73 16 14 C -0.04 -1.33 9.50 22.43 0.21 -1.12 16 15 C -0.20 -8.40 5.52 -19.62 -0.11 -8.51 16 16 C 0.03 1.18 4.92 -20.05 -0.10 1.08 16 17 C -0.11 -3.93 7.95 22.58 0.18 -3.75 16 18 C 0.09 2.81 7.29 22.34 0.16 2.97 16 19 F -0.14 -4.28 17.26 44.97 0.78 -3.50 16 20 C -0.12 -3.10 9.41 22.39 0.21 -2.89 16 21 C -0.16 -4.17 5.37 -19.91 -0.11 -4.28 16 22 C 0.52 12.38 3.31 71.23 0.24 12.61 16 23 F -0.17 -3.84 15.96 44.97 0.72 -3.12 16 24 F -0.18 -4.42 17.23 44.97 0.77 -3.64 16 25 F -0.17 -4.11 17.23 44.97 0.78 -3.34 16 26 C -0.08 -2.47 9.06 22.54 0.20 -2.27 16 27 H 0.29 12.81 8.29 -92.71 -0.77 12.05 16 28 H 0.11 5.90 6.19 -2.91 -0.02 5.89 16 29 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 30 H 0.14 4.18 8.04 -2.91 -0.02 4.15 16 31 H 0.13 5.18 7.30 -2.91 -0.02 5.16 16 32 H 0.17 3.48 7.14 -2.91 -0.02 3.46 16 33 H 0.15 3.98 8.05 -2.91 -0.02 3.96 16 Total: -1.00 -50.04 312.57 9.26 -40.79 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 1.20 Total: 17.34 kcal Atomic # 6 Polarization: -38.31 SS G_CDS: 1.97 Total: -36.34 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.24 Total: -38.72 kcal Atomic # 9 Polarization: -24.15 SS G_CDS: 3.82 Total: -20.33 kcal Atomic # 14 Polarization: 35.24 SS G_CDS: 2.03 Total: 37.27 kcal Total: -50.04 9.26 -40.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241082403.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.114 kcal (2) G-P(sol) polarization free energy of solvation -50.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds