Wall clock time and date at job start Tue Mar 31 2020 15:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86800 * 120.00119 * 2 1 4 4 H 1.48499 * 109.47146 * 89.99609 * 3 2 1 5 5 H 1.48503 * 109.46975 * 209.99499 * 3 2 1 6 6 H 1.48495 * 109.46994 * 329.99500 * 3 2 1 7 7 C 1.40006 * 119.99806 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99999 * 17.83064 * 7 2 1 9 9 C 1.40943 * 120.00080 * 197.81821 * 7 2 1 10 10 C 1.40945 * 120.13666 * 28.82802 * 9 7 2 11 11 C 1.36190 * 119.90196 * 180.02562 * 10 9 7 12 12 C 1.40026 * 120.18749 * 0.02562 * 11 10 9 13 13 C 1.47996 * 119.86180 * 179.97438 * 12 11 10 14 14 C 1.39573 * 120.13449 * 0.02562 * 13 12 11 15 15 C 1.38151 * 119.83149 * 179.97438 * 14 13 12 16 16 F 1.35099 * 119.95374 * 179.97438 * 15 14 13 17 17 C 1.38623 * 120.09079 * 0.02562 * 15 14 13 18 18 C 1.38326 * 120.26727 * 359.97438 * 17 15 14 19 19 C 1.50692 * 119.91510 * 180.02562 * 18 17 15 20 20 F 1.39894 * 109.47492 * 0.02562 * 19 18 17 21 21 F 1.39905 * 109.47392 * 120.00582 * 19 18 17 22 22 F 1.39909 * 109.47003 * 240.00262 * 19 18 17 23 23 C 1.37970 * 120.16615 * 359.74817 * 18 17 15 24 24 C 1.39774 * 120.27276 * 359.95960 * 12 11 10 25 25 C 1.36577 * 120.10063 * 359.75373 * 24 12 11 26 26 F 1.35097 * 120.09547 * 180.25439 * 25 24 12 27 27 H 0.96998 * 119.99845 * 175.44437 * 1 2 3 28 28 H 1.08002 * 120.04579 * 0.02562 * 10 9 7 29 29 H 1.08001 * 119.90758 * 180.02562 * 11 10 9 30 30 H 1.07998 * 120.08545 * 359.97438 * 14 13 12 31 31 H 1.08006 * 119.86917 * 179.97438 * 17 15 14 32 32 H 1.08005 * 120.04715 * 180.27430 * 23 18 17 33 33 H 1.07999 * 119.95223 * 180.02562 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4897 2.0464 1.4001 5 1 3.5399 1.4400 -0.7000 6 1 1.4398 2.6526 -0.7001 7 6 2.0082 -1.2125 0.0005 8 1 1.5071 -2.1255 -0.2855 9 6 3.3669 -1.2417 0.3741 10 6 3.8712 -0.2909 1.2841 11 6 5.1851 -0.3231 1.6413 12 6 6.0363 -1.2979 1.1066 13 6 7.4630 -1.3260 1.4993 14 6 7.9602 -0.3838 2.4011 15 6 9.2928 -0.4161 2.7638 16 9 9.7768 0.4950 3.6360 17 6 10.1343 -1.3815 2.2331 18 6 9.6457 -2.3171 1.3391 19 6 10.5674 -3.3634 0.7675 20 9 11.8542 -3.1852 1.2867 21 9 10.0985 -4.6359 1.1111 22 9 10.6051 -3.2408 -0.6257 23 6 8.3154 -2.2984 0.9738 24 6 5.5442 -2.2447 0.2038 25 6 4.2273 -2.2265 -0.1579 26 9 3.7506 -3.1448 -1.0265 27 1 -0.4850 -0.8374 -0.0667 28 1 3.2167 0.4622 1.6975 29 1 5.5715 0.4051 2.3389 30 1 7.3048 0.3686 2.8143 31 1 11.1757 -1.4032 2.5188 32 1 7.9350 -3.0326 0.2790 33 1 6.2053 -2.9945 -0.2051 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241083334.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:44 Heat of formation + Delta-G solvation = -219.634278 kcal Electronic energy + Delta-G solvation = -26637.624751 eV Core-core repulsion = 21847.937205 eV Total energy + Delta-G solvation = -4789.687546 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.22792 -49.98202 -49.41623 -48.73922 -48.68631 -40.73546 -39.13361 -36.04650 -33.89225 -32.70606 -31.29456 -30.83734 -27.27980 -26.94216 -24.43892 -23.56756 -22.80368 -21.94031 -20.35328 -19.74050 -19.54548 -19.47803 -17.92157 -17.73033 -17.50283 -17.12214 -16.67773 -16.63785 -16.31083 -16.24045 -15.87873 -15.58639 -15.47984 -15.12078 -15.04804 -15.00671 -14.84108 -14.81989 -14.43218 -14.40440 -13.95603 -13.74280 -13.71962 -13.08900 -13.00862 -12.75147 -12.50154 -12.40836 -12.00418 -11.81851 -11.48429 -11.08741 -10.60834 -10.06928 -9.64765 -9.61203 -9.12554 -6.70566 -0.45401 -0.17390 0.62056 0.74145 1.35509 1.53098 1.53666 1.75969 2.09366 2.19267 2.55864 2.63150 2.87599 3.15764 3.24960 3.35832 3.59651 3.75599 3.79607 3.97035 4.04769 4.07499 4.24469 4.42285 4.60806 4.75400 4.82642 4.87105 4.93959 5.08452 5.23802 5.34512 5.35491 5.61567 5.69893 5.76638 5.81294 6.13068 6.38186 6.56053 7.78820 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.017356 B = 0.003530 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.844197 B = 7929.293661 C = 9164.043081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.013 3.987 3 Si 1.101 2.899 4 H -0.239 1.239 5 H -0.257 1.257 6 H -0.279 1.279 7 C -0.524 4.524 8 H 0.048 0.952 9 C 0.060 3.940 10 C -0.236 4.236 11 C -0.046 4.046 12 C -0.171 4.171 13 C 0.028 3.972 14 C -0.135 4.135 15 C 0.109 3.891 16 F -0.133 7.133 17 C -0.128 4.128 18 C -0.148 4.148 19 C 0.517 3.483 20 F -0.172 7.172 21 F -0.177 7.177 22 F -0.177 7.177 23 C -0.099 4.099 24 C -0.080 4.080 25 C -0.048 4.048 26 F -0.169 7.169 27 H 0.282 0.718 28 H 0.125 0.875 29 H 0.150 0.850 30 H 0.161 0.839 31 H 0.165 0.835 32 H 0.142 0.858 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.038 0.416 4.803 19.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.203 4.203 3 Si 0.919 3.081 4 H -0.163 1.163 5 H -0.182 1.182 6 H -0.206 1.206 7 C -0.551 4.551 8 H 0.066 0.934 9 C 0.057 3.943 10 C -0.255 4.255 11 C -0.064 4.064 12 C -0.172 4.172 13 C 0.028 3.972 14 C -0.153 4.153 15 C 0.090 3.910 16 F -0.111 7.111 17 C -0.147 4.147 18 C -0.149 4.149 19 C 0.463 3.537 20 F -0.154 7.154 21 F -0.159 7.159 22 F -0.158 7.158 23 C -0.118 4.118 24 C -0.099 4.099 25 C -0.067 4.067 26 F -0.149 7.149 27 H 0.093 0.907 28 H 0.143 0.857 29 H 0.167 0.833 30 H 0.179 0.821 31 H 0.183 0.817 32 H 0.160 0.840 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 18.710 1.945 4.832 19.421 hybrid contribution -0.644 -2.617 -0.530 2.747 sum 18.066 -0.672 4.302 18.583 Atomic orbital electron populations 1.70591 1.08667 1.33024 1.31657 1.28630 0.95685 1.06955 0.89066 0.83313 0.74900 0.69740 0.80137 1.16336 1.18156 1.20567 1.20676 0.96255 0.96750 1.41450 0.93419 1.18085 0.92794 0.92138 0.91318 1.20859 0.97265 1.04034 1.03325 1.20917 0.92062 0.96413 0.97027 1.17912 0.92063 1.01275 1.05916 1.18346 0.91731 0.93194 0.93942 1.21558 0.94324 1.00751 0.98712 1.17252 0.92089 0.89556 0.92090 1.91530 1.88338 1.64669 1.66611 1.20977 1.01920 0.94198 0.97568 1.19544 0.94290 0.98357 1.02727 1.18084 0.79049 0.80756 0.75844 1.93170 1.40468 1.95190 1.86541 1.93230 1.88407 1.42274 1.91971 1.93232 1.96462 1.95905 1.30249 1.21087 0.91452 0.99155 1.00063 1.20683 0.92730 0.99059 0.97434 1.17731 0.93447 0.96076 0.99495 1.91284 1.89546 1.65444 1.68586 0.90679 0.85739 0.83262 0.82141 0.81736 0.84047 0.84639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.50 13.66 21.84 0.30 -42.20 16 2 C 0.01 0.65 5.41 85.27 0.46 1.11 16 3 Si 1.10 43.41 24.90 68.60 1.71 45.12 16 4 H -0.24 -8.13 6.43 99.48 0.64 -7.49 16 5 H -0.26 -9.98 7.03 99.48 0.70 -9.28 16 6 H -0.28 -10.69 7.11 99.48 0.71 -9.98 16 7 C -0.52 -27.84 9.12 23.36 0.21 -27.63 16 8 H 0.05 2.78 7.94 -2.91 -0.02 2.75 16 9 C 0.06 2.89 5.14 -21.23 -0.11 2.78 16 10 C -0.24 -9.62 7.20 22.46 0.16 -9.46 16 11 C -0.05 -1.56 9.36 22.23 0.21 -1.35 16 12 C -0.17 -5.66 5.90 -19.88 -0.12 -5.78 16 13 C 0.03 0.75 5.88 -20.04 -0.12 0.64 16 14 C -0.13 -3.09 9.40 22.57 0.21 -2.87 16 15 C 0.11 2.33 7.29 22.34 0.16 2.49 16 16 F -0.13 -2.81 17.26 44.97 0.78 -2.03 16 17 C -0.13 -2.54 9.41 22.38 0.21 -2.33 16 18 C -0.15 -3.24 5.37 -19.91 -0.11 -3.34 16 19 C 0.52 10.88 3.31 71.23 0.24 11.12 16 20 F -0.17 -3.36 15.96 44.97 0.72 -2.64 16 21 F -0.18 -3.98 17.23 44.97 0.77 -3.21 16 22 F -0.18 -3.97 17.24 44.97 0.78 -3.20 16 23 C -0.10 -2.46 8.97 22.53 0.20 -2.26 16 24 C -0.08 -3.00 9.33 22.25 0.21 -2.79 16 25 C -0.05 -2.18 7.26 22.60 0.16 -2.02 16 26 F -0.17 -8.18 16.74 44.97 0.75 -7.43 16 27 H 0.28 14.64 8.73 -92.71 -0.81 13.84 16 28 H 0.13 4.87 4.39 -2.91 -0.01 4.86 16 29 H 0.15 3.75 6.17 -2.91 -0.02 3.73 16 30 H 0.16 3.12 6.18 -2.91 -0.02 3.10 16 31 H 0.17 2.58 7.14 -2.91 -0.02 2.56 16 32 H 0.14 3.37 6.18 -2.91 -0.02 3.35 16 33 H 0.14 4.32 6.17 -2.91 -0.02 4.30 16 Total: -1.00 -54.45 304.80 8.90 -45.55 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: 1.11 Total: 11.73 kcal Atomic # 6 Polarization: -43.69 SS G_CDS: 1.99 Total: -41.70 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: 0.30 Total: -42.20 kcal Atomic # 9 Polarization: -22.30 SS G_CDS: 3.80 Total: -18.51 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.71 Total: 45.12 kcal Total: -54.45 8.90 -45.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241083334.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.080 kcal (2) G-P(sol) polarization free energy of solvation -54.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -228.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds