Wall clock time and date at job start Tue Mar 31 2020 15:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30793 * 1 3 3 Si 1.86803 * 120.00061 * 2 1 4 4 H 1.48499 * 109.46915 * 275.27065 * 3 2 1 5 5 H 1.48501 * 109.46884 * 35.27084 * 3 2 1 6 6 H 1.48497 * 109.47052 * 155.27238 * 3 2 1 7 7 C 1.40077 * 120.00030 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99867 * 340.87267 * 7 2 1 9 9 C 1.40799 * 120.00022 * 160.87123 * 7 2 1 10 10 C 1.41034 * 120.34171 * 316.24291 * 9 7 2 11 11 F 1.35100 * 120.10556 * 0.02562 * 10 9 7 12 12 C 1.37746 * 119.79185 * 180.02562 * 10 9 7 13 13 C 1.38805 * 120.52107 * 359.97438 * 12 10 9 14 14 C 1.38143 * 120.71407 * 0.03677 * 13 12 10 15 15 C 1.39048 * 120.18094 * 0.23714 * 14 13 12 16 16 C 1.47903 * 120.26163 * 179.71719 * 15 14 13 17 17 C 1.39621 * 120.13261 * 129.72617 * 16 15 14 18 18 C 1.38133 * 119.82610 * 179.72216 * 17 16 15 19 19 F 1.35096 * 119.95598 * 180.25209 * 18 17 16 20 20 C 1.38640 * 120.09180 * 0.55607 * 18 17 16 21 21 C 1.38328 * 120.27370 * 359.71622 * 20 18 17 22 22 C 1.50698 * 119.91316 * 180.02562 * 21 20 18 23 23 F 1.39893 * 109.47679 * 269.98249 * 22 21 20 24 24 F 1.39899 * 109.46854 * 29.98623 * 22 21 20 25 25 F 1.39903 * 109.47148 * 149.97873 * 22 21 20 26 26 C 1.37961 * 120.17665 * 0.02562 * 21 20 18 27 27 H 0.96991 * 119.99687 * 0.02562 * 1 2 3 28 28 H 1.08007 * 119.74017 * 179.97438 * 12 10 9 29 29 H 1.08005 * 119.63934 * 180.02562 * 13 12 10 30 30 H 1.08001 * 119.91235 * 179.97438 * 14 13 12 31 31 H 1.08006 * 120.08523 * 359.97438 * 17 16 15 32 32 H 1.08002 * 119.86261 * 179.74132 * 20 18 17 33 33 H 1.08005 * 120.05300 * 180.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2420 1.6178 0.0000 4 1 2.3781 2.1107 -1.3942 5 1 1.4995 2.6179 0.8085 6 1 3.5908 1.4106 0.5856 7 6 2.0083 -1.2131 -0.0005 8 1 1.5130 -2.1227 0.3055 9 6 3.3580 -1.2466 -0.4001 10 6 3.7810 -0.5340 -1.5413 11 9 2.8914 0.1866 -2.2586 12 6 5.1041 -0.5751 -1.9224 13 6 6.0256 -1.3123 -1.1915 14 6 5.6344 -2.0183 -0.0704 15 6 4.3052 -2.0020 0.3374 16 6 3.8832 -2.7623 1.5339 17 6 3.1299 -2.1392 2.5306 18 6 2.7343 -2.8568 3.6427 19 9 2.0010 -2.2578 4.6063 20 6 3.0941 -4.1892 3.7743 21 6 3.8452 -4.8090 2.7919 22 6 4.2313 -6.2578 2.9430 23 9 5.4583 -6.3466 3.6090 24 9 3.2501 -6.9273 3.6820 25 9 4.3439 -6.8448 1.6780 26 6 4.2419 -4.1044 1.6741 27 1 -0.4849 0.8400 -0.0004 28 1 5.4271 -0.0295 -2.7967 29 1 7.0595 -1.3342 -1.5028 30 1 6.3622 -2.5879 0.4885 31 1 2.8537 -1.0998 2.4305 32 1 2.7864 -4.7456 4.6473 33 1 4.8279 -4.5904 0.9080 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241083375.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:22 Heat of formation + Delta-G solvation = -208.417691 kcal Electronic energy + Delta-G solvation = -27516.492794 eV Core-core repulsion = 22727.291636 eV Total energy + Delta-G solvation = -4789.201158 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.18694 -49.98626 -49.59179 -48.69572 -48.63782 -40.65360 -38.87049 -35.59760 -33.91472 -32.33893 -32.10569 -29.96883 -27.35719 -27.03741 -24.56327 -23.35973 -22.69151 -21.93467 -19.84587 -19.52048 -19.49150 -19.39468 -17.74050 -17.55075 -17.35249 -17.32155 -17.06645 -16.72362 -16.50478 -16.25096 -15.82105 -15.52343 -15.46414 -15.09962 -14.96351 -14.94668 -14.79364 -14.74654 -14.35489 -14.15523 -13.76039 -13.64388 -13.43194 -13.30373 -12.99900 -12.92043 -12.57086 -12.43768 -12.06397 -12.00712 -11.47787 -11.14253 -10.39094 -10.00257 -9.40933 -9.21587 -8.90702 -6.55004 -0.29544 -0.09503 0.61371 0.65877 1.25798 1.30137 1.35280 1.56095 2.06770 2.27044 2.53978 2.59299 2.90725 3.16605 3.30097 3.39418 3.64385 3.84840 3.89488 3.96579 4.15521 4.23177 4.39652 4.50186 4.63590 4.81993 4.83104 4.90747 4.96664 5.24244 5.32209 5.40817 5.55088 5.64587 5.78561 5.81949 6.07461 6.26856 6.58944 6.72045 8.15673 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.014861 B = 0.004794 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.717198 B = 5838.702668 C = 6960.574390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.062 3.938 3 Si 0.937 3.063 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.250 1.250 7 C -0.479 4.479 8 H 0.066 0.934 9 C 0.063 3.937 10 C -0.043 4.043 11 F -0.160 7.160 12 C -0.114 4.114 13 C -0.181 4.181 14 C -0.070 4.070 15 C -0.144 4.144 16 C 0.020 3.980 17 C -0.103 4.103 18 C 0.086 3.914 19 F -0.141 7.141 20 C -0.111 4.111 21 C -0.160 4.160 22 C 0.524 3.476 23 F -0.172 7.172 24 F -0.176 7.176 25 F -0.175 7.175 26 C -0.077 4.077 27 H 0.290 0.710 28 H 0.137 0.863 29 H 0.155 0.845 30 H 0.147 0.853 31 H 0.127 0.873 32 H 0.166 0.834 33 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.989 -7.265 5.253 14.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.153 4.153 3 Si 0.760 3.240 4 H -0.187 1.187 5 H -0.206 1.206 6 H -0.173 1.173 7 C -0.509 4.509 8 H 0.084 0.916 9 C 0.060 3.940 10 C -0.063 4.063 11 F -0.139 7.139 12 C -0.133 4.133 13 C -0.199 4.199 14 C -0.088 4.088 15 C -0.145 4.145 16 C 0.020 3.980 17 C -0.122 4.122 18 C 0.067 3.933 19 F -0.119 7.119 20 C -0.130 4.130 21 C -0.161 4.161 22 C 0.470 3.530 23 F -0.153 7.153 24 F -0.157 7.157 25 F -0.156 7.156 26 C -0.095 4.095 27 H 0.101 0.899 28 H 0.155 0.845 29 H 0.172 0.828 30 H 0.164 0.836 31 H 0.145 0.855 32 H 0.183 0.817 33 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 10.652 -7.166 5.283 13.883 hybrid contribution -0.931 0.995 -0.103 1.367 sum 9.721 -6.171 5.180 12.626 Atomic orbital electron populations 1.69699 1.09052 1.31064 1.36984 1.26550 0.95052 1.03273 0.90461 0.86021 0.80309 0.78515 0.79107 1.18669 1.20580 1.17312 1.18962 0.94144 0.95568 1.42203 0.91594 1.17798 0.93639 0.92108 0.90499 1.18374 0.88361 1.04884 0.94699 1.91197 1.69100 1.76235 1.77356 1.21177 0.90732 1.00331 1.01042 1.20840 0.99869 1.01744 0.97483 1.21251 0.93752 0.97630 0.96122 1.18695 0.93398 1.06373 0.96063 1.18374 0.94896 0.92465 0.92276 1.21564 0.96966 1.01513 0.92174 1.17411 0.96465 0.91797 0.87615 1.91489 1.74986 1.83815 1.61631 1.20910 0.98571 0.92904 1.00614 1.19597 1.05348 0.92780 0.98413 1.17886 0.74753 0.86555 0.73806 1.93230 1.44473 1.96786 1.80855 1.93194 1.62526 1.82536 1.77424 1.93206 1.95860 1.85905 1.40627 1.21226 0.98998 0.92624 0.96635 0.89902 0.84549 0.82765 0.83576 0.85535 0.81658 0.82461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.15 13.93 21.85 0.30 -45.85 16 2 C 0.06 3.29 4.99 85.29 0.43 3.72 16 3 Si 0.94 42.96 24.72 68.60 1.70 44.65 16 4 H -0.26 -12.06 6.29 99.48 0.63 -11.43 16 5 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 6 H -0.25 -11.19 7.11 99.48 0.71 -10.49 16 7 C -0.48 -25.16 6.91 23.34 0.16 -24.99 16 8 H 0.07 3.77 7.75 -2.91 -0.02 3.75 16 9 C 0.06 2.91 4.68 -21.08 -0.10 2.81 16 10 C -0.04 -1.94 5.65 22.84 0.13 -1.81 16 11 F -0.16 -7.79 12.91 44.97 0.58 -7.21 16 12 C -0.11 -4.08 9.99 22.29 0.22 -3.85 16 13 C -0.18 -5.41 10.03 22.38 0.22 -5.19 16 14 C -0.07 -2.18 9.49 22.44 0.21 -1.96 16 15 C -0.14 -5.58 5.52 -19.63 -0.11 -5.69 16 16 C 0.02 0.72 5.02 -20.05 -0.10 0.62 16 17 C -0.10 -3.88 8.35 22.58 0.19 -3.69 16 18 C 0.09 2.87 7.29 22.34 0.16 3.03 16 19 F -0.14 -4.78 17.26 44.97 0.78 -4.00 16 20 C -0.11 -3.07 9.37 22.39 0.21 -2.86 16 21 C -0.16 -4.30 5.45 -19.91 -0.11 -4.41 16 22 C 0.52 12.39 3.36 71.24 0.24 12.63 16 23 F -0.17 -3.90 17.30 44.97 0.78 -3.12 16 24 F -0.18 -4.12 16.45 44.97 0.74 -3.38 16 25 F -0.17 -4.25 16.45 44.97 0.74 -3.51 16 26 C -0.08 -2.25 8.86 22.54 0.20 -2.05 16 27 H 0.29 14.60 8.29 -92.72 -0.77 13.83 16 28 H 0.14 4.11 8.06 -2.91 -0.02 4.09 16 29 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 30 H 0.15 3.47 8.04 -2.91 -0.02 3.45 16 31 H 0.13 5.31 7.31 -2.91 -0.02 5.29 16 32 H 0.17 3.66 7.59 -2.91 -0.02 3.64 16 33 H 0.16 3.95 7.58 -2.91 -0.02 3.92 16 Total: -1.00 -56.87 307.17 8.69 -48.19 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: 1.11 Total: 7.93 kcal Atomic # 6 Polarization: -35.66 SS G_CDS: 1.96 Total: -33.71 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: 0.30 Total: -45.85 kcal Atomic # 9 Polarization: -24.83 SS G_CDS: 3.61 Total: -21.21 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 1.70 Total: 44.65 kcal Total: -56.87 8.69 -48.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241083375.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.232 kcal (2) G-P(sol) polarization free energy of solvation -56.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds