Wall clock time and date at job start Tue Mar 31 2020 15:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30865 * 1 3 3 Si 1.86800 * 119.99791 * 2 1 4 4 H 1.48502 * 109.47109 * 239.99842 * 3 2 1 5 5 H 1.48496 * 109.47177 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47085 * 119.99842 * 3 2 1 7 7 C 1.39900 * 119.99818 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99229 * 197.92458 * 7 2 1 9 9 C 1.41336 * 120.00005 * 17.92842 * 7 2 1 10 10 C 1.40849 * 120.15540 * 24.56893 * 9 7 2 11 11 C 1.37559 * 120.02138 * 180.02562 * 10 9 7 12 12 C 1.38766 * 120.34882 * 359.97438 * 11 10 9 13 13 F 1.35096 * 119.84279 * 180.02562 * 12 11 10 14 14 C 1.39997 * 120.31144 * 359.97438 * 12 11 10 15 15 C 1.48386 * 120.01048 * 180.02562 * 14 12 11 16 16 C 1.39327 * 120.10193 * 130.00238 * 15 14 12 17 17 C 1.38232 * 119.84822 * 180.30040 * 16 15 14 18 18 F 1.35099 * 119.96221 * 179.72298 * 17 16 15 19 19 C 1.38569 * 120.06453 * 359.44114 * 17 16 15 20 20 C 1.38253 * 120.22121 * 0.56057 * 19 17 16 21 21 C 1.50706 * 119.92359 * 179.74426 * 20 19 17 22 22 F 1.39903 * 109.47063 * 269.97575 * 21 20 19 23 23 F 1.39896 * 109.46984 * 29.97551 * 21 20 19 24 24 F 1.39902 * 109.47110 * 149.97633 * 21 20 19 25 25 C 1.38054 * 120.15165 * 359.72184 * 20 19 17 26 26 C 1.38669 * 119.96879 * 0.29908 * 14 12 11 27 27 H 0.97001 * 119.99880 * 359.97438 * 1 2 3 28 28 H 1.07994 * 119.99291 * 0.02562 * 10 9 7 29 29 H 1.08000 * 119.82621 * 179.97438 * 11 10 9 30 30 H 1.08003 * 120.07818 * 0.02562 * 16 15 14 31 31 H 1.07996 * 119.88290 * 180.30511 * 19 17 16 32 32 H 1.08001 * 120.03406 * 179.97438 * 25 20 19 33 33 H 1.07998 * 120.16691 * 179.72344 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 3.0964 1.6965 -1.2125 5 1 1.2776 2.7464 0.0006 6 1 3.0963 1.6965 1.2125 7 6 2.0081 -1.2116 0.0005 8 1 3.0488 -1.2340 0.2884 9 6 1.3529 -2.4060 -0.3757 10 6 0.2239 -2.3591 -1.2166 11 6 -0.4120 -3.5232 -1.5807 12 6 0.0528 -4.7484 -1.1240 13 9 -0.5792 -5.8854 -1.4884 14 6 1.1743 -4.8118 -0.2885 15 6 1.6660 -6.1255 0.1954 16 6 3.0138 -6.4561 0.0711 17 6 3.4650 -7.6839 0.5181 18 9 4.7704 -8.0091 0.3936 19 6 2.5809 -8.5790 1.0989 20 6 1.2430 -8.2538 1.2236 21 6 0.2863 -9.2347 1.8511 22 9 -0.2486 -10.0639 0.8594 23 9 0.9677 -10.0134 2.7926 24 9 -0.7484 -8.5372 2.4838 25 6 0.7814 -7.0325 0.7751 26 6 1.8220 -3.6459 0.0912 27 1 -0.4850 0.8401 0.0004 28 1 -0.1426 -1.4088 -1.5757 29 1 -1.2776 -3.4835 -2.2253 30 1 3.7036 -5.7565 -0.3774 31 1 2.9376 -9.5354 1.4515 32 1 -0.2642 -6.7806 0.8731 33 1 2.6847 -3.6907 0.7393 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241083869.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:29 Heat of formation + Delta-G solvation = -208.885662 kcal Electronic energy + Delta-G solvation = -26776.096720 eV Core-core repulsion = 21986.875269 eV Total energy + Delta-G solvation = -4789.221451 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.20277 -48.94683 -47.72701 -47.70130 -47.65236 -39.31531 -37.39245 -34.02512 -32.48486 -31.14233 -29.91163 -28.47293 -26.23617 -25.24330 -23.23803 -22.36751 -21.04302 -20.66720 -18.62778 -18.52929 -18.45628 -17.20209 -16.45543 -16.37766 -16.18154 -16.04156 -15.66087 -15.47298 -14.74063 -14.55395 -14.50673 -14.38748 -14.24891 -14.09035 -13.82710 -13.81401 -13.30331 -13.19314 -12.73179 -12.66857 -12.50315 -12.24277 -12.07283 -11.90138 -11.48332 -11.34151 -11.17099 -11.02003 -10.62620 -10.17681 -9.77141 -9.36466 -9.24515 -8.86462 -7.80148 -7.49316 -7.01692 -4.60383 0.77296 1.00941 2.38981 2.50460 2.58265 2.94992 2.95704 3.00709 3.40165 3.58419 3.75578 3.92110 4.23478 4.33396 4.37859 4.70311 4.90950 4.98095 5.19544 5.26920 5.48752 5.54815 5.83445 5.89919 5.96994 6.01017 6.33242 6.52791 6.62702 6.74004 6.81734 6.95731 7.14271 7.37098 7.59984 7.70687 7.89936 8.28798 8.57745 8.60523 9.93041 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.016811 B = 0.003370 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.153829 B = 8307.587358 C = 9010.796424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.076 3.924 3 Si 0.912 3.088 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.454 4.454 8 H 0.083 0.917 9 C 0.102 3.898 10 C -0.131 4.131 11 C -0.128 4.128 12 C -0.024 4.024 13 F -0.166 7.166 14 C -0.071 4.071 15 C 0.017 3.983 16 C -0.113 4.113 17 C 0.099 3.901 18 F -0.135 7.135 19 C -0.122 4.122 20 C -0.158 4.158 21 C 0.513 3.487 22 F -0.175 7.175 23 F -0.178 7.178 24 F -0.173 7.173 25 C -0.066 4.066 26 C -0.182 4.182 27 H 0.286 0.714 28 H 0.129 0.871 29 H 0.106 0.894 30 H 0.148 0.852 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.330 -10.360 1.739 10.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.144 4.144 3 Si 0.736 3.264 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.483 4.483 8 H 0.101 0.899 9 C 0.099 3.901 10 C -0.150 4.150 11 C -0.147 4.147 12 C -0.044 4.044 13 F -0.146 7.146 14 C -0.072 4.072 15 C 0.017 3.983 16 C -0.132 4.132 17 C 0.079 3.921 18 F -0.113 7.113 19 C -0.141 4.141 20 C -0.159 4.159 21 C 0.459 3.541 22 F -0.156 7.156 23 F -0.159 7.159 24 F -0.154 7.154 25 C -0.084 4.084 26 C -0.202 4.202 27 H 0.097 0.903 28 H 0.147 0.853 29 H 0.124 0.876 30 H 0.166 0.834 31 H 0.161 0.839 32 H 0.161 0.839 33 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.117 -10.272 1.761 10.635 hybrid contribution 0.216 0.357 0.096 0.428 sum 2.333 -9.916 1.857 10.354 Atomic orbital electron populations 1.69790 1.07679 1.29977 1.33686 1.25957 0.94794 1.01649 0.91980 0.86284 0.80151 0.79735 0.80210 1.18602 1.20158 1.18807 1.19563 0.98361 0.90975 1.39371 0.89902 1.17559 0.91421 0.91969 0.89147 1.21346 0.98178 0.96587 0.98903 1.20657 1.00546 0.91523 1.01957 1.17206 0.97331 0.81508 1.08369 1.91307 1.81932 1.49975 1.91353 1.18140 0.96979 0.90947 1.01109 1.18692 0.91477 0.93774 0.94339 1.21524 0.96551 0.95265 0.99821 1.17285 0.78405 0.94570 1.01792 1.91515 1.32873 1.92864 1.94084 1.20699 0.91735 1.00652 1.00990 1.19580 0.93603 0.96052 1.06708 1.18162 0.79768 0.79902 0.76291 1.93231 1.87207 1.73631 1.61558 1.93180 1.79678 1.76618 1.66467 1.93214 1.60566 1.78789 1.82831 1.21157 1.01231 0.91014 0.95024 1.20903 1.03116 0.90893 1.05270 0.90316 0.85293 0.87586 0.83415 0.83861 0.83903 0.87491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.47 10.96 55.54 0.61 -17.86 16 2 C 0.08 1.71 5.13 -17.34 -0.09 1.62 16 3 Si 0.91 16.99 29.60 -169.99 -5.03 11.95 16 4 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 5 H -0.28 -5.06 7.11 56.52 0.40 -4.65 16 6 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 7 C -0.45 -10.77 9.04 -37.78 -0.34 -11.11 16 8 H 0.08 1.87 7.91 -52.49 -0.41 1.45 16 9 C 0.10 2.42 5.57 -106.86 -0.60 1.82 16 10 C -0.13 -3.05 8.68 -38.84 -0.34 -3.39 16 11 C -0.13 -2.77 9.99 -39.63 -0.40 -3.17 16 12 C -0.02 -0.52 7.18 -38.73 -0.28 -0.80 16 13 F -0.17 -3.43 15.86 2.25 0.04 -3.40 16 14 C -0.07 -1.45 5.47 -104.90 -0.57 -2.02 16 15 C 0.02 0.30 5.31 -104.91 -0.56 -0.25 16 16 C -0.11 -1.74 9.48 -39.18 -0.37 -2.11 16 17 C 0.10 1.39 7.29 -39.46 -0.29 1.10 16 18 F -0.13 -1.84 17.26 2.25 0.04 -1.80 16 19 C -0.12 -1.60 9.37 -39.45 -0.37 -1.97 16 20 C -0.16 -2.24 5.45 -104.68 -0.57 -2.81 16 21 C 0.51 6.81 3.36 36.01 0.12 6.93 16 22 F -0.17 -2.36 17.30 2.25 0.04 -2.32 16 23 F -0.18 -2.22 16.45 2.25 0.04 -2.18 16 24 F -0.17 -2.41 16.46 2.25 0.04 -2.37 16 25 C -0.07 -1.07 8.20 -39.25 -0.32 -1.39 16 26 C -0.18 -3.94 9.24 -38.55 -0.36 -4.30 16 27 H 0.29 6.11 8.30 -40.82 -0.34 5.77 16 28 H 0.13 3.08 6.15 -52.49 -0.32 2.75 16 29 H 0.11 2.08 8.06 -52.49 -0.42 1.66 16 30 H 0.15 2.14 8.04 -52.48 -0.42 1.71 16 31 H 0.14 1.55 7.59 -52.49 -0.40 1.15 16 32 H 0.14 2.35 7.31 -52.49 -0.38 1.97 16 33 H 0.11 2.15 8.04 -52.49 -0.42 1.73 16 LS Contribution 315.39 15.07 4.75 4.75 Total: -1.00 -23.74 315.39 -6.73 -30.46 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -1.92 Total: 4.62 kcal Atomic # 6 Polarization: -16.54 SS G_CDS: -5.32 Total: -21.86 kcal Atomic # 7 Polarization: -18.47 SS G_CDS: 0.61 Total: -17.86 kcal Atomic # 9 Polarization: -12.26 SS G_CDS: 0.19 Total: -12.07 kcal Atomic # 14 Polarization: 16.99 SS G_CDS: -5.03 Total: 11.95 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -23.74 -6.73 -30.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241083869.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -178.421 kcal (2) G-P(sol) polarization free energy of solvation -23.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds