Wall clock time and date at job start Tue Mar 31 2020 15:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30865 * 1 3 3 Si 1.86800 * 119.99791 * 2 1 4 4 H 1.48502 * 109.47109 * 239.99842 * 3 2 1 5 5 H 1.48496 * 109.47177 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47085 * 119.99842 * 3 2 1 7 7 C 1.39900 * 119.99818 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99229 * 197.92458 * 7 2 1 9 9 C 1.41336 * 120.00005 * 17.92842 * 7 2 1 10 10 C 1.40849 * 120.15540 * 24.56893 * 9 7 2 11 11 C 1.37559 * 120.02138 * 180.02562 * 10 9 7 12 12 C 1.38766 * 120.34882 * 359.97438 * 11 10 9 13 13 F 1.35096 * 119.84279 * 180.02562 * 12 11 10 14 14 C 1.39997 * 120.31144 * 359.97438 * 12 11 10 15 15 C 1.48386 * 120.01048 * 180.02562 * 14 12 11 16 16 C 1.39327 * 120.10193 * 130.00238 * 15 14 12 17 17 C 1.38232 * 119.84822 * 180.30040 * 16 15 14 18 18 F 1.35099 * 119.96221 * 179.72298 * 17 16 15 19 19 C 1.38569 * 120.06453 * 359.44114 * 17 16 15 20 20 C 1.38253 * 120.22121 * 0.56057 * 19 17 16 21 21 C 1.50706 * 119.92359 * 179.74426 * 20 19 17 22 22 F 1.39903 * 109.47063 * 269.97575 * 21 20 19 23 23 F 1.39896 * 109.46984 * 29.97551 * 21 20 19 24 24 F 1.39902 * 109.47110 * 149.97633 * 21 20 19 25 25 C 1.38054 * 120.15165 * 359.72184 * 20 19 17 26 26 C 1.38669 * 119.96879 * 0.29908 * 14 12 11 27 27 H 0.97001 * 119.99880 * 359.97438 * 1 2 3 28 28 H 1.07994 * 119.99291 * 0.02562 * 10 9 7 29 29 H 1.08000 * 119.82621 * 179.97438 * 11 10 9 30 30 H 1.08003 * 120.07818 * 0.02562 * 16 15 14 31 31 H 1.07996 * 119.88290 * 180.30511 * 19 17 16 32 32 H 1.08001 * 120.03406 * 179.97438 * 25 20 19 33 33 H 1.07998 * 120.16691 * 179.72344 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 3.0964 1.6965 -1.2125 5 1 1.2776 2.7464 0.0006 6 1 3.0963 1.6965 1.2125 7 6 2.0081 -1.2116 0.0005 8 1 3.0488 -1.2340 0.2884 9 6 1.3529 -2.4060 -0.3757 10 6 0.2239 -2.3591 -1.2166 11 6 -0.4120 -3.5232 -1.5807 12 6 0.0528 -4.7484 -1.1240 13 9 -0.5792 -5.8854 -1.4884 14 6 1.1743 -4.8118 -0.2885 15 6 1.6660 -6.1255 0.1954 16 6 3.0138 -6.4561 0.0711 17 6 3.4650 -7.6839 0.5181 18 9 4.7704 -8.0091 0.3936 19 6 2.5809 -8.5790 1.0989 20 6 1.2430 -8.2538 1.2236 21 6 0.2863 -9.2347 1.8511 22 9 -0.2486 -10.0639 0.8594 23 9 0.9677 -10.0134 2.7926 24 9 -0.7484 -8.5372 2.4838 25 6 0.7814 -7.0325 0.7751 26 6 1.8220 -3.6459 0.0912 27 1 -0.4850 0.8401 0.0004 28 1 -0.1426 -1.4088 -1.5757 29 1 -1.2776 -3.4835 -2.2253 30 1 3.7036 -5.7565 -0.3774 31 1 2.9376 -9.5354 1.4515 32 1 -0.2642 -6.7806 0.8731 33 1 2.6847 -3.6907 0.7393 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241083869.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:28 Heat of formation + Delta-G solvation = -215.806511 kcal Electronic energy + Delta-G solvation = -26776.396830 eV Core-core repulsion = 21986.875269 eV Total energy + Delta-G solvation = -4789.521562 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.26323 -50.06000 -49.38455 -48.76863 -48.71923 -40.60242 -39.01399 -35.67671 -33.87813 -32.38804 -31.64331 -29.97033 -27.40317 -26.93540 -24.63814 -23.62464 -22.62081 -22.18577 -19.94658 -19.58812 -19.53609 -18.75928 -18.04255 -17.58103 -17.39720 -17.35272 -17.07192 -16.76956 -16.37447 -16.03478 -15.83810 -15.59572 -15.48198 -15.15575 -14.91691 -14.86972 -14.75758 -14.49299 -14.29753 -13.93113 -13.83567 -13.79881 -13.59527 -13.26346 -13.02267 -12.83013 -12.62399 -12.48659 -12.22878 -11.78377 -11.44707 -11.02690 -10.56823 -10.09735 -9.49056 -9.16466 -8.71395 -6.39584 -0.43060 -0.22350 0.73790 0.84174 1.42207 1.47537 1.50031 1.54279 2.14299 2.20006 2.49243 2.59231 2.82581 3.08440 3.29940 3.48274 3.57446 3.72038 3.80577 3.83185 3.99705 4.22557 4.27753 4.55473 4.73428 4.81000 4.86999 4.92019 4.99196 5.16153 5.27059 5.42520 5.53443 5.66915 5.83646 5.95670 6.17436 6.53064 6.82705 6.84803 8.25538 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.016811 B = 0.003370 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.153829 B = 8307.587358 C = 9010.796424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.039 3.961 3 Si 0.982 3.018 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.259 1.259 7 C -0.484 4.484 8 H 0.086 0.914 9 C 0.078 3.922 10 C -0.154 4.154 11 C -0.129 4.129 12 C -0.036 4.036 13 F -0.162 7.162 14 C -0.061 4.061 15 C -0.009 4.009 16 C -0.110 4.110 17 C 0.103 3.897 18 F -0.129 7.129 19 C -0.102 4.102 20 C -0.157 4.157 21 C 0.520 3.480 22 F -0.175 7.175 23 F -0.169 7.169 24 F -0.177 7.177 25 C -0.071 4.071 26 C -0.190 4.190 27 H 0.292 0.708 28 H 0.117 0.883 29 H 0.122 0.878 30 H 0.153 0.847 31 H 0.174 0.826 32 H 0.135 0.865 33 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.472 -11.517 2.308 12.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.178 4.178 3 Si 0.802 3.198 4 H -0.183 1.183 5 H -0.194 1.194 6 H -0.183 1.183 7 C -0.513 4.513 8 H 0.104 0.896 9 C 0.076 3.924 10 C -0.173 4.173 11 C -0.148 4.148 12 C -0.056 4.056 13 F -0.142 7.142 14 C -0.062 4.062 15 C -0.009 4.009 16 C -0.128 4.128 17 C 0.084 3.916 18 F -0.107 7.107 19 C -0.121 4.121 20 C -0.158 4.158 21 C 0.466 3.534 22 F -0.156 7.156 23 F -0.150 7.150 24 F -0.159 7.159 25 C -0.090 4.090 26 C -0.209 4.209 27 H 0.103 0.897 28 H 0.135 0.865 29 H 0.140 0.860 30 H 0.171 0.829 31 H 0.192 0.808 32 H 0.153 0.847 33 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.255 -11.451 2.329 12.130 hybrid contribution -0.132 0.545 -0.057 0.563 sum 3.122 -10.906 2.273 11.570 Atomic orbital electron populations 1.69841 1.09025 1.31161 1.34169 1.26750 0.95435 1.04569 0.91028 0.85241 0.78801 0.75551 0.80177 1.18348 1.19430 1.18348 1.19849 0.98780 0.91935 1.40714 0.89576 1.17895 0.91915 0.93038 0.89568 1.21269 0.99144 0.96618 1.00274 1.20832 1.00805 0.91341 1.01830 1.17351 0.97979 0.81542 1.08756 1.91308 1.81892 1.49606 1.91349 1.18330 0.95969 0.92218 0.99659 1.18514 0.92656 0.93004 0.96703 1.21547 0.95725 0.96089 0.99485 1.17202 0.78743 0.94109 1.01531 1.91538 1.32478 1.92714 1.94004 1.21010 0.90883 1.01328 0.98852 1.19610 0.94324 0.95465 1.06448 1.17957 0.79449 0.79697 0.76289 1.93236 1.87196 1.73549 1.61626 1.93201 1.79443 1.76304 1.66101 1.93211 1.60796 1.78971 1.82902 1.21085 1.00758 0.91722 0.95398 1.21049 1.03642 0.90728 1.05481 0.89682 0.86505 0.85998 0.82883 0.80832 0.84724 0.86407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -39.17 10.96 21.82 0.24 -38.93 16 2 C 0.04 1.78 5.13 85.24 0.44 2.21 16 3 Si 0.98 34.74 29.60 68.60 2.03 36.77 16 4 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 5 H -0.27 -9.15 7.11 99.48 0.71 -8.44 16 6 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 7 C -0.48 -23.48 9.04 23.43 0.21 -23.27 16 8 H 0.09 3.95 7.91 -2.91 -0.02 3.93 16 9 C 0.08 3.83 5.57 -21.32 -0.12 3.71 16 10 C -0.15 -7.42 8.68 22.75 0.20 -7.22 16 11 C -0.13 -5.72 9.99 22.24 0.22 -5.50 16 12 C -0.04 -1.57 7.18 22.82 0.16 -1.41 16 13 F -0.16 -6.66 15.86 44.97 0.71 -5.94 16 14 C -0.06 -2.50 5.47 -20.04 -0.11 -2.61 16 15 C -0.01 -0.29 5.31 -20.05 -0.11 -0.40 16 16 C -0.11 -3.21 9.48 22.53 0.21 -3.00 16 17 C 0.10 2.62 7.29 22.35 0.16 2.78 16 18 F -0.13 -3.13 17.26 44.97 0.78 -2.36 16 19 C -0.10 -2.34 9.37 22.35 0.21 -2.13 16 20 C -0.16 -4.09 5.45 -19.90 -0.11 -4.20 16 21 C 0.52 12.59 3.36 71.24 0.24 12.83 16 22 F -0.17 -4.32 17.30 44.97 0.78 -3.54 16 23 F -0.17 -3.69 16.45 44.97 0.74 -2.95 16 24 F -0.18 -4.67 16.46 44.97 0.74 -3.93 16 25 C -0.07 -2.23 8.20 22.49 0.18 -2.05 16 26 C -0.19 -8.33 9.24 22.94 0.21 -8.11 16 27 H 0.29 12.69 8.30 -92.71 -0.77 11.92 16 28 H 0.12 5.84 6.15 -2.91 -0.02 5.82 16 29 H 0.12 4.84 8.06 -2.91 -0.02 4.82 16 30 H 0.15 4.24 8.04 -2.91 -0.02 4.22 16 31 H 0.17 2.96 7.59 -2.91 -0.02 2.93 16 32 H 0.13 4.39 7.31 -2.91 -0.02 4.37 16 33 H 0.12 4.78 8.04 -2.91 -0.02 4.75 16 Total: -1.00 -50.67 315.39 9.23 -41.45 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 1.20 Total: 17.81 kcal Atomic # 6 Polarization: -40.39 SS G_CDS: 2.01 Total: -38.37 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: 0.24 Total: -38.93 kcal Atomic # 9 Polarization: -22.47 SS G_CDS: 3.75 Total: -18.72 kcal Atomic # 14 Polarization: 34.74 SS G_CDS: 2.03 Total: 36.77 kcal Total: -50.67 9.23 -41.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241083869.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.358 kcal (2) G-P(sol) polarization free energy of solvation -50.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds