Wall clock time and date at job start Tue Mar 31 2020 15:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86798 * 120.00038 * 2 1 4 4 H 1.48498 * 109.47437 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47063 * 120.00053 * 3 2 1 6 6 H 1.48501 * 109.47193 * 239.99446 * 3 2 1 7 7 C 1.39991 * 120.00330 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00303 * 206.59525 * 7 2 1 9 9 C 1.40942 * 119.99771 * 26.58766 * 7 2 1 10 10 C 1.40949 * 120.13318 * 25.36825 * 9 7 2 11 11 C 1.36188 * 119.90138 * 180.02562 * 10 9 7 12 12 C 1.40039 * 120.17989 * 0.02562 * 11 10 9 13 13 C 1.47965 * 119.85896 * 180.02562 * 12 11 10 14 14 C 1.39646 * 120.11595 * 0.02562 * 13 12 11 15 15 C 1.37858 * 119.87771 * 179.97438 * 14 13 12 16 16 C 1.38657 * 120.11921 * 0.02562 * 15 14 13 17 17 F 1.35101 * 119.88239 * 179.97438 * 16 15 14 18 18 C 1.38619 * 120.23625 * 0.02562 * 16 15 14 19 19 C 1.50704 * 119.94140 * 179.97438 * 18 16 15 20 20 F 1.39897 * 109.47283 * 180.02562 * 19 18 16 21 21 F 1.39901 * 109.47218 * 300.00359 * 19 18 16 22 22 F 1.39898 * 109.46885 * 60.00246 * 19 18 16 23 23 C 1.37894 * 120.11923 * 359.70348 * 18 16 15 24 24 C 1.39795 * 120.27529 * 359.97438 * 12 11 10 25 25 C 1.36559 * 120.09772 * 359.70297 * 24 12 11 26 26 F 1.35096 * 120.09315 * 180.30121 * 25 24 12 27 27 H 0.97007 * 120.00167 * 185.88463 * 1 2 3 28 28 H 1.08002 * 120.04917 * 0.02562 * 10 9 7 29 29 H 1.07999 * 119.90450 * 179.97438 * 11 10 9 30 30 H 1.07994 * 120.06627 * 359.95929 * 14 13 12 31 31 H 1.08001 * 119.93951 * 179.97438 * 15 14 13 32 32 H 1.07995 * 120.06400 * 180.27056 * 23 18 16 33 33 H 1.08003 * 119.94916 * 180.02562 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 1.2773 2.7465 -0.0006 5 1 3.0959 1.6964 1.2125 6 1 3.0961 1.6963 -1.2124 7 6 2.0082 -1.2123 0.0005 8 1 3.0025 -1.2616 0.4193 9 6 1.4153 -2.3686 -0.5453 10 6 0.4166 -2.2527 -1.5331 11 6 -0.1535 -3.3732 -2.0569 12 6 0.2495 -4.6399 -1.6163 13 6 -0.3743 -5.8525 -2.1906 14 6 -1.3625 -5.7351 -3.1704 15 6 -1.9399 -6.8682 -3.7025 16 6 -1.5417 -8.1226 -3.2662 17 9 -2.1112 -9.2298 -3.7906 18 6 -0.5620 -8.2447 -2.2931 19 6 -0.1346 -9.6114 -1.8234 20 9 0.8575 -9.4794 -0.8460 21 9 -1.2355 -10.2839 -1.2820 22 9 0.3705 -10.3396 -2.9059 23 6 0.0262 -7.1180 -1.7582 24 6 1.2393 -4.7635 -0.6369 25 6 1.8232 -3.6477 -0.1087 26 9 2.7841 -3.7675 0.8333 27 1 -0.4851 -0.8357 0.0861 28 1 0.1039 -1.2768 -1.8741 29 1 -0.9190 -3.2844 -2.8135 30 1 -1.6739 -4.7586 -3.5104 31 1 -2.7045 -6.7786 -4.4600 32 1 0.7924 -7.2143 -1.0033 33 1 1.5464 -5.7430 -0.3013 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241094991.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:19 Heat of formation + Delta-G solvation = -213.937637 kcal Electronic energy + Delta-G solvation = -26729.369820 eV Core-core repulsion = 21939.929299 eV Total energy + Delta-G solvation = -4789.440521 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.19478 -48.92517 -47.63948 -47.61093 -47.56586 -39.36000 -37.57632 -34.59617 -32.23036 -31.46724 -29.67296 -28.76887 -26.07242 -25.40506 -23.09172 -22.47266 -21.09651 -20.62380 -18.52566 -18.50162 -18.42755 -18.33518 -17.25907 -16.31019 -15.93690 -15.63937 -15.29159 -14.96954 -14.60796 -14.47059 -14.42916 -14.37841 -14.16834 -14.04912 -13.88027 -13.77704 -13.69338 -13.21409 -12.97926 -12.87299 -12.64914 -12.63215 -11.97136 -11.83136 -11.51842 -11.25495 -11.09302 -10.92142 -10.62520 -10.17689 -9.95574 -9.49300 -9.33146 -8.96269 -8.03183 -7.74983 -7.49113 -4.82701 0.78406 1.06996 2.30663 2.44174 2.62915 2.94144 2.98485 3.15466 3.56000 3.66142 3.69753 3.94772 4.19798 4.20486 4.41346 4.72284 5.00128 5.03405 5.16210 5.24877 5.53781 5.59868 5.73759 5.82334 6.00664 6.12151 6.15047 6.30543 6.53368 6.65893 6.76396 6.93409 7.15081 7.26874 7.38328 7.49140 7.58334 7.77930 8.20367 8.33219 9.53166 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.024150 B = 0.003013 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.164439 B = 9291.597556 C =10175.318453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.761 5.761 2 C 0.035 3.965 3 Si 1.068 2.932 4 H -0.269 1.269 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.470 4.470 8 H 0.090 0.910 9 C 0.074 3.926 10 C -0.211 4.211 11 C -0.053 4.053 12 C -0.208 4.208 13 C 0.021 3.979 14 C -0.091 4.091 15 C -0.136 4.136 16 C 0.097 3.903 17 F -0.136 7.136 18 C -0.203 4.203 19 C 0.513 3.487 20 F -0.174 7.174 21 F -0.176 7.176 22 F -0.176 7.176 23 C -0.080 4.080 24 C -0.079 4.079 25 C -0.030 4.030 26 F -0.160 7.160 27 H 0.305 0.695 28 H 0.116 0.884 29 H 0.103 0.897 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.144 0.856 33 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.540 -8.043 -4.764 9.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.381 5.381 2 C -0.191 4.191 3 Si 0.890 3.110 4 H -0.193 1.193 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.495 4.495 8 H 0.108 0.892 9 C 0.069 3.931 10 C -0.230 4.230 11 C -0.072 4.072 12 C -0.209 4.209 13 C 0.021 3.979 14 C -0.109 4.109 15 C -0.155 4.155 16 C 0.077 3.923 17 F -0.115 7.115 18 C -0.205 4.205 19 C 0.458 3.542 20 F -0.156 7.156 21 F -0.157 7.157 22 F -0.157 7.157 23 C -0.098 4.098 24 C -0.099 4.099 25 C -0.049 4.049 26 F -0.139 7.139 27 H 0.119 0.881 28 H 0.134 0.866 29 H 0.121 0.879 30 H 0.158 0.842 31 H 0.158 0.842 32 H 0.161 0.839 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.787 -6.478 -4.776 8.517 hybrid contribution 0.281 -2.297 0.227 2.325 sum -2.506 -8.775 -4.549 10.196 Atomic orbital electron populations 1.70476 1.08255 1.34962 1.24426 1.27360 0.95555 1.04898 0.91239 0.83570 0.75789 0.73012 0.78650 1.19304 1.19537 1.19420 1.20860 1.03648 0.93986 1.31045 0.89221 1.17802 0.92276 0.91320 0.91666 1.20655 1.03526 0.97803 1.01016 1.20461 0.97423 0.91728 0.97571 1.17509 1.05942 0.90701 1.06796 1.18849 0.93413 0.92256 0.93419 1.21291 0.95464 0.98445 0.95706 1.20967 1.02173 0.90183 1.02174 1.17153 0.95564 0.83409 0.96156 1.91504 1.83429 1.51335 1.85236 1.19856 1.03840 0.92833 1.04015 1.18129 0.74963 0.85858 0.75216 1.93173 1.62696 1.95957 1.63741 1.93213 1.53767 1.82365 1.86395 1.93212 1.87652 1.79763 1.55121 1.20952 0.99323 0.90071 0.99435 1.20361 0.96445 0.96449 0.96599 1.17279 0.97012 0.94137 0.96516 1.91308 1.62243 1.96780 1.63536 0.88097 0.86600 0.87893 0.84202 0.84193 0.83873 0.87397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.63 12.31 55.55 0.68 -16.95 16 2 C 0.04 0.78 4.90 -17.33 -0.08 0.70 16 3 Si 1.07 18.82 30.01 -169.99 -5.10 13.72 16 4 H -0.27 -4.69 7.11 56.52 0.40 -4.29 16 5 H -0.27 -4.57 7.11 56.52 0.40 -4.17 16 6 H -0.27 -4.58 7.11 56.52 0.40 -4.18 16 7 C -0.47 -11.23 8.68 -37.90 -0.33 -11.55 16 8 H 0.09 2.13 7.80 -52.49 -0.41 1.73 16 9 C 0.07 1.75 5.30 -106.73 -0.57 1.19 16 10 C -0.21 -4.61 7.92 -39.29 -0.31 -4.93 16 11 C -0.05 -1.03 9.35 -39.64 -0.37 -1.40 16 12 C -0.21 -3.98 5.90 -104.65 -0.62 -4.60 16 13 C 0.02 0.34 5.88 -104.87 -0.62 -0.27 16 14 C -0.09 -1.27 9.42 -39.20 -0.37 -1.64 16 15 C -0.14 -1.75 10.01 -39.57 -0.40 -2.15 16 16 C 0.10 1.40 7.14 -39.29 -0.28 1.12 16 17 F -0.14 -1.99 16.44 2.25 0.04 -1.95 16 18 C -0.20 -3.06 5.37 -104.61 -0.56 -3.62 16 19 C 0.51 7.48 3.02 36.01 0.11 7.59 16 20 F -0.17 -2.51 15.97 2.25 0.04 -2.47 16 21 F -0.18 -2.59 17.05 2.25 0.04 -2.55 16 22 F -0.18 -2.58 17.05 2.25 0.04 -2.54 16 23 C -0.08 -1.25 8.80 -39.20 -0.35 -1.59 16 24 C -0.08 -1.62 9.33 -39.61 -0.37 -1.99 16 25 C -0.03 -0.69 7.26 -39.07 -0.28 -0.97 16 26 F -0.16 -3.73 16.70 2.25 0.04 -3.70 16 27 H 0.31 7.22 6.79 -40.82 -0.28 6.95 16 28 H 0.12 2.57 6.52 -52.49 -0.34 2.22 16 29 H 0.10 1.67 6.17 -52.49 -0.32 1.34 16 30 H 0.14 1.71 6.18 -52.49 -0.32 1.39 16 31 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.14 2.17 5.27 -52.49 -0.28 1.89 16 33 H 0.11 1.97 6.17 -52.48 -0.32 1.65 16 LS Contribution 308.06 15.07 4.64 4.64 Total: -1.00 -23.96 308.06 -6.47 -30.43 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -1.49 Total: 5.50 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: -5.39 Total: -24.13 kcal Atomic # 7 Polarization: -17.63 SS G_CDS: 0.68 Total: -16.95 kcal Atomic # 9 Polarization: -13.40 SS G_CDS: 0.19 Total: -13.21 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.10 Total: 13.72 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -23.96 -6.47 -30.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241094991.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -183.507 kcal (2) G-P(sol) polarization free energy of solvation -23.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds