Wall clock time and date at job start Tue Mar 31 2020 15:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86798 * 120.00038 * 2 1 4 4 H 1.48498 * 109.47437 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47063 * 120.00053 * 3 2 1 6 6 H 1.48501 * 109.47193 * 239.99446 * 3 2 1 7 7 C 1.39991 * 120.00330 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00303 * 206.59525 * 7 2 1 9 9 C 1.40942 * 119.99771 * 26.58766 * 7 2 1 10 10 C 1.40949 * 120.13318 * 25.36825 * 9 7 2 11 11 C 1.36188 * 119.90138 * 180.02562 * 10 9 7 12 12 C 1.40039 * 120.17989 * 0.02562 * 11 10 9 13 13 C 1.47965 * 119.85896 * 180.02562 * 12 11 10 14 14 C 1.39646 * 120.11595 * 0.02562 * 13 12 11 15 15 C 1.37858 * 119.87771 * 179.97438 * 14 13 12 16 16 C 1.38657 * 120.11921 * 0.02562 * 15 14 13 17 17 F 1.35101 * 119.88239 * 179.97438 * 16 15 14 18 18 C 1.38619 * 120.23625 * 0.02562 * 16 15 14 19 19 C 1.50704 * 119.94140 * 179.97438 * 18 16 15 20 20 F 1.39897 * 109.47283 * 180.02562 * 19 18 16 21 21 F 1.39901 * 109.47218 * 300.00359 * 19 18 16 22 22 F 1.39898 * 109.46885 * 60.00246 * 19 18 16 23 23 C 1.37894 * 120.11923 * 359.70348 * 18 16 15 24 24 C 1.39795 * 120.27529 * 359.97438 * 12 11 10 25 25 C 1.36559 * 120.09772 * 359.70297 * 24 12 11 26 26 F 1.35096 * 120.09315 * 180.30121 * 25 24 12 27 27 H 0.97007 * 120.00167 * 185.88463 * 1 2 3 28 28 H 1.08002 * 120.04917 * 0.02562 * 10 9 7 29 29 H 1.07999 * 119.90450 * 179.97438 * 11 10 9 30 30 H 1.07994 * 120.06627 * 359.95929 * 14 13 12 31 31 H 1.08001 * 119.93951 * 179.97438 * 15 14 13 32 32 H 1.07995 * 120.06400 * 180.27056 * 23 18 16 33 33 H 1.08003 * 119.94916 * 180.02562 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 1.2773 2.7465 -0.0006 5 1 3.0959 1.6964 1.2125 6 1 3.0961 1.6963 -1.2124 7 6 2.0082 -1.2123 0.0005 8 1 3.0025 -1.2616 0.4193 9 6 1.4153 -2.3686 -0.5453 10 6 0.4166 -2.2527 -1.5331 11 6 -0.1535 -3.3732 -2.0569 12 6 0.2495 -4.6399 -1.6163 13 6 -0.3743 -5.8525 -2.1906 14 6 -1.3625 -5.7351 -3.1704 15 6 -1.9399 -6.8682 -3.7025 16 6 -1.5417 -8.1226 -3.2662 17 9 -2.1112 -9.2298 -3.7906 18 6 -0.5620 -8.2447 -2.2931 19 6 -0.1346 -9.6114 -1.8234 20 9 0.8575 -9.4794 -0.8460 21 9 -1.2355 -10.2839 -1.2820 22 9 0.3705 -10.3396 -2.9059 23 6 0.0262 -7.1180 -1.7582 24 6 1.2393 -4.7635 -0.6369 25 6 1.8232 -3.6477 -0.1087 26 9 2.7841 -3.7675 0.8333 27 1 -0.4851 -0.8357 0.0861 28 1 0.1039 -1.2768 -1.8741 29 1 -0.9190 -3.2844 -2.8135 30 1 -1.6739 -4.7586 -3.5104 31 1 -2.7045 -6.7786 -4.4600 32 1 0.7924 -7.2143 -1.0033 33 1 1.5464 -5.7430 -0.3013 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241094991.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:18 Heat of formation + Delta-G solvation = -221.785004 kcal Electronic energy + Delta-G solvation = -26729.710107 eV Core-core repulsion = 21939.929299 eV Total energy + Delta-G solvation = -4789.780809 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.36125 -50.10599 -49.35789 -48.80427 -48.78001 -40.69355 -39.10679 -36.18084 -33.47971 -32.85268 -31.29051 -30.26788 -27.33567 -26.90908 -24.44537 -23.84098 -22.60985 -22.07130 -20.13076 -19.67600 -19.66852 -19.54980 -18.51101 -17.71478 -17.39681 -16.82629 -16.80924 -16.51033 -16.18786 -15.87658 -15.73155 -15.63867 -15.47858 -15.22381 -15.21472 -14.94291 -14.90916 -14.59239 -14.50492 -14.40224 -13.95922 -13.82868 -13.54091 -13.28862 -13.01008 -12.64227 -12.59363 -12.28307 -11.97551 -11.69854 -11.54960 -11.06486 -10.53186 -10.35840 -9.69946 -9.40448 -9.04984 -6.57028 -0.46205 -0.12965 0.72810 0.80911 1.46094 1.50844 1.58479 1.80594 2.22985 2.26184 2.49387 2.65207 2.78077 3.01652 3.22271 3.34550 3.57972 3.65061 3.92585 3.98403 4.08406 4.19455 4.32079 4.52862 4.73769 4.77815 4.80850 4.92932 4.97646 5.21980 5.28098 5.41947 5.57383 5.63733 5.71600 5.87834 5.92515 6.11379 6.52669 6.64614 7.82855 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.024150 B = 0.003013 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.164439 B = 9291.597556 C =10175.318453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.011 3.989 3 Si 1.115 2.885 4 H -0.264 1.264 5 H -0.262 1.262 6 H -0.260 1.260 7 C -0.523 4.523 8 H 0.073 0.927 9 C 0.051 3.949 10 C -0.218 4.218 11 C -0.053 4.053 12 C -0.185 4.185 13 C -0.006 4.006 14 C -0.072 4.072 15 C -0.126 4.126 16 C 0.106 3.894 17 F -0.134 7.134 18 C -0.216 4.216 19 C 0.514 3.486 20 F -0.175 7.175 21 F -0.177 7.177 22 F -0.176 7.176 23 C -0.075 4.075 24 C -0.086 4.086 25 C -0.064 4.064 26 F -0.170 7.170 27 H 0.291 0.709 28 H 0.109 0.891 29 H 0.142 0.858 30 H 0.165 0.835 31 H 0.179 0.821 32 H 0.143 0.857 33 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.220 -9.405 -6.916 12.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.209 4.209 3 Si 0.931 3.069 4 H -0.188 1.188 5 H -0.186 1.186 6 H -0.184 1.184 7 C -0.549 4.549 8 H 0.091 0.909 9 C 0.047 3.953 10 C -0.238 4.238 11 C -0.071 4.071 12 C -0.186 4.186 13 C -0.006 4.006 14 C -0.089 4.089 15 C -0.144 4.144 16 C 0.087 3.913 17 F -0.113 7.113 18 C -0.218 4.218 19 C 0.460 3.540 20 F -0.156 7.156 21 F -0.158 7.158 22 F -0.158 7.158 23 C -0.093 4.093 24 C -0.104 4.104 25 C -0.084 4.084 26 F -0.150 7.150 27 H 0.104 0.896 28 H 0.127 0.873 29 H 0.160 0.840 30 H 0.182 0.818 31 H 0.196 0.804 32 H 0.161 0.839 33 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.470 -7.875 -6.931 11.403 hybrid contribution 0.624 -2.383 0.704 2.561 sum -3.846 -10.258 -6.227 12.601 Atomic orbital electron populations 1.70578 1.08669 1.33846 1.27428 1.28508 0.95585 1.07173 0.89634 0.83015 0.74952 0.69644 0.79272 1.18797 1.18641 1.18431 1.20863 1.03776 0.95529 1.34706 0.90909 1.18123 0.93143 0.91692 0.92338 1.20698 1.03590 0.98537 1.00938 1.20831 0.97652 0.90799 0.97814 1.17855 1.04003 0.91984 1.04747 1.18775 0.95313 0.91145 0.95387 1.21583 0.93511 1.00091 0.93743 1.21328 1.02191 0.88706 1.02154 1.17455 0.94561 0.84156 0.95151 1.91524 1.83238 1.51477 1.85048 1.19902 1.04491 0.92700 1.04687 1.18097 0.74938 0.85789 0.75198 1.93177 1.62717 1.95950 1.63765 1.93214 1.53791 1.82383 1.86409 1.93213 1.87656 1.79774 1.55119 1.20963 0.99073 0.90147 0.99154 1.20641 0.96499 0.96506 0.96800 1.17645 0.98111 0.95076 0.97586 1.91261 1.62781 1.96843 1.64070 0.89642 0.87333 0.84003 0.81769 0.80382 0.83934 0.85576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -37.86 12.31 21.84 0.27 -37.59 16 2 C 0.01 0.51 4.90 85.27 0.42 0.93 16 3 Si 1.12 39.08 30.01 68.60 2.06 41.14 16 4 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 5 H -0.26 -8.69 7.11 99.48 0.71 -7.98 16 6 H -0.26 -8.60 7.11 99.48 0.71 -7.89 16 7 C -0.52 -26.57 8.68 23.36 0.20 -26.36 16 8 H 0.07 3.76 7.80 -2.91 -0.02 3.74 16 9 C 0.05 2.53 5.30 -21.23 -0.11 2.41 16 10 C -0.22 -9.70 7.92 22.46 0.18 -9.52 16 11 C -0.05 -1.95 9.35 22.23 0.21 -1.74 16 12 C -0.18 -6.71 5.90 -19.89 -0.12 -6.83 16 13 C -0.01 -0.17 5.88 -20.03 -0.12 -0.29 16 14 C -0.07 -1.63 9.42 22.52 0.21 -1.42 16 15 C -0.13 -2.53 10.01 22.28 0.22 -2.30 16 16 C 0.11 2.62 7.14 22.46 0.16 2.78 16 17 F -0.13 -3.36 16.44 44.97 0.74 -2.62 16 18 C -0.22 -5.82 5.37 -19.85 -0.11 -5.92 16 19 C 0.51 13.80 3.02 71.24 0.22 14.02 16 20 F -0.17 -4.73 15.97 44.97 0.72 -4.01 16 21 F -0.18 -4.79 17.05 44.97 0.77 -4.02 16 22 F -0.18 -4.75 17.05 44.97 0.77 -3.98 16 23 C -0.08 -2.15 8.80 22.52 0.20 -1.96 16 24 C -0.09 -3.49 9.33 22.25 0.21 -3.28 16 25 C -0.06 -3.09 7.26 22.60 0.16 -2.93 16 26 F -0.17 -8.40 16.70 44.97 0.75 -7.65 16 27 H 0.29 14.49 6.79 -92.70 -0.63 13.86 16 28 H 0.11 4.93 6.52 -2.91 -0.02 4.91 16 29 H 0.14 4.03 6.17 -2.91 -0.02 4.01 16 30 H 0.16 3.00 6.18 -2.91 -0.02 2.98 16 31 H 0.18 2.33 8.06 -2.91 -0.02 2.31 16 32 H 0.14 4.05 5.27 -2.91 -0.02 4.04 16 33 H 0.13 4.54 6.17 -2.91 -0.02 4.53 16 Total: -1.00 -54.25 308.06 9.36 -44.89 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 1.36 Total: 16.28 kcal Atomic # 6 Polarization: -44.36 SS G_CDS: 1.93 Total: -42.43 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.27 Total: -37.59 kcal Atomic # 9 Polarization: -26.03 SS G_CDS: 3.74 Total: -22.29 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 2.06 Total: 41.14 kcal Total: -54.25 9.36 -44.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241094991.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.896 kcal (2) G-P(sol) polarization free energy of solvation -54.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds