Wall clock time and date at job start Tue Mar 31 2020 15:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30805 * 1 3 3 Si 1.86800 * 119.99998 * 2 1 4 4 H 1.48503 * 109.46973 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47011 * 300.00215 * 3 2 1 6 6 H 1.48499 * 109.47173 * 60.00212 * 3 2 1 7 7 C 1.39985 * 120.00106 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00105 * 197.98149 * 7 2 1 9 9 C 1.41016 * 119.99972 * 17.97312 * 7 2 1 10 10 C 1.40984 * 120.09982 * 204.69097 * 9 7 2 11 11 C 1.36221 * 119.92557 * 179.76156 * 10 9 7 12 12 C 1.39966 * 120.14040 * 0.51609 * 11 10 9 13 13 C 1.47914 * 119.89746 * 179.76311 * 12 11 10 14 14 C 1.39666 * 120.12357 * 129.74610 * 13 12 11 15 15 C 1.37843 * 119.87960 * 179.97438 * 14 13 12 16 16 C 1.38666 * 120.12358 * 359.97438 * 15 14 13 17 17 F 1.35095 * 119.88374 * 180.28226 * 16 15 14 18 18 C 1.38630 * 120.24062 * 0.02562 * 16 15 14 19 19 C 1.50697 * 119.94281 * 180.02562 * 18 16 15 20 20 F 1.39891 * 109.47211 * 180.02562 * 19 18 16 21 21 F 1.39898 * 109.46971 * 300.00422 * 19 18 16 22 22 F 1.39901 * 109.46664 * 60.00225 * 19 18 16 23 23 C 1.37891 * 120.11639 * 0.02562 * 18 16 15 24 24 C 1.40168 * 120.20523 * 359.48004 * 12 11 10 25 25 F 1.35095 * 119.96593 * 180.27583 * 24 12 11 26 26 C 1.36469 * 120.06562 * 0.25889 * 24 12 11 27 27 H 0.97001 * 120.00135 * 0.02562 * 1 2 3 28 28 H 1.07991 * 120.03623 * 0.04320 * 10 9 7 29 29 H 1.07998 * 119.93202 * 180.27423 * 11 10 9 30 30 H 1.07998 * 120.05782 * 359.94903 * 14 13 12 31 31 H 1.08006 * 119.94248 * 179.97438 * 15 14 13 32 32 H 1.07995 * 120.05729 * 180.02562 * 23 18 16 33 33 H 1.08004 * 120.06593 * 179.97438 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 3.7021 1.3463 -0.0006 5 1 1.8832 2.3964 -1.2125 6 1 1.8833 2.3964 1.2125 7 6 2.0080 -1.2123 -0.0005 8 1 3.0485 -1.2353 0.2882 9 6 1.3545 -2.4036 -0.3779 10 6 1.8271 -3.6474 0.0882 11 6 1.1902 -4.7956 -0.2746 12 6 0.0743 -4.7439 -1.1179 13 6 -0.6100 -5.9944 -1.5127 14 6 -1.9954 -6.1081 -1.3775 15 6 -2.6280 -7.2756 -1.7475 16 6 -1.8916 -8.3359 -2.2536 17 9 -2.5172 -9.4758 -2.6200 18 6 -0.5162 -8.2286 -2.3899 19 6 0.2776 -9.3849 -2.9412 20 9 1.6332 -9.0422 -2.9830 21 9 0.1049 -10.5033 -2.1187 22 9 -0.1687 -9.6828 -4.2332 23 6 0.1269 -7.0657 -2.0219 24 6 -0.4004 -3.5104 -1.5846 25 9 -1.4813 -3.4658 -2.3938 26 6 0.2280 -2.3545 -1.2221 27 1 -0.4850 0.8400 -0.0004 28 1 2.6902 -3.6895 0.7358 29 1 1.5494 -5.7481 0.0860 30 1 -2.5700 -5.2829 -0.9835 31 1 -3.6993 -7.3647 -1.6430 32 1 1.1984 -6.9829 -2.1289 33 1 -0.1376 -1.4041 -1.5821 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241095143.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:41 Heat of formation + Delta-G solvation = -216.167734 kcal Electronic energy + Delta-G solvation = -26849.296584 eV Core-core repulsion = 22059.759359 eV Total energy + Delta-G solvation = -4789.537225 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.32699 -50.13780 -49.59846 -48.76108 -48.74439 -40.45622 -39.00299 -35.80289 -33.49415 -32.88433 -31.04594 -30.40635 -27.32405 -27.02642 -24.27054 -23.51859 -22.87106 -22.01441 -19.64087 -19.62340 -19.60297 -19.43794 -18.41907 -17.76330 -17.40119 -16.85238 -16.74530 -16.58051 -16.44631 -16.12572 -15.69214 -15.60092 -15.28443 -15.17291 -14.98504 -14.90083 -14.83969 -14.56579 -14.42012 -14.20103 -13.97203 -13.67288 -13.61208 -13.30124 -12.85665 -12.75653 -12.50775 -12.24373 -12.06652 -11.87583 -11.54946 -11.15283 -10.48008 -10.08025 -9.43612 -9.11893 -8.77525 -6.47589 -0.37434 -0.07042 0.75453 0.97455 1.39925 1.45947 1.49659 1.55676 2.15688 2.25261 2.50789 2.61902 2.78830 3.00759 3.26610 3.52210 3.64804 3.73742 3.77338 4.05275 4.15815 4.37213 4.49786 4.73850 4.78558 4.81448 4.92461 4.99132 5.06797 5.19136 5.34745 5.53410 5.62329 5.74116 5.87817 5.95213 6.20956 6.51470 6.76050 6.82006 8.15959 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.025051 B = 0.003028 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.455180 B = 9245.379160 C = 9890.091520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.036 3.964 3 Si 0.985 3.015 4 H -0.252 1.252 5 H -0.267 1.267 6 H -0.264 1.264 7 C -0.472 4.472 8 H 0.093 0.907 9 C 0.109 3.891 10 C -0.241 4.241 11 C -0.036 4.036 12 C -0.238 4.238 13 C -0.015 4.015 14 C -0.062 4.062 15 C -0.134 4.134 16 C 0.120 3.880 17 F -0.131 7.131 18 C -0.221 4.221 19 C 0.518 3.482 20 F -0.171 7.171 21 F -0.175 7.175 22 F -0.177 7.177 23 C -0.050 4.050 24 C 0.126 3.874 25 F -0.161 7.161 26 C -0.234 4.234 27 H 0.294 0.706 28 H 0.116 0.884 29 H 0.133 0.867 30 H 0.141 0.859 31 H 0.174 0.826 32 H 0.153 0.847 33 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.719 -10.518 -2.349 10.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.183 4.183 3 Si 0.805 3.195 4 H -0.175 1.175 5 H -0.191 1.191 6 H -0.189 1.189 7 C -0.499 4.499 8 H 0.111 0.889 9 C 0.106 3.894 10 C -0.260 4.260 11 C -0.055 4.055 12 C -0.240 4.240 13 C -0.015 4.015 14 C -0.080 4.080 15 C -0.152 4.152 16 C 0.100 3.900 17 F -0.110 7.110 18 C -0.224 4.224 19 C 0.463 3.537 20 F -0.152 7.152 21 F -0.157 7.157 22 F -0.159 7.159 23 C -0.068 4.068 24 C 0.106 3.894 25 F -0.139 7.139 26 C -0.255 4.255 27 H 0.105 0.895 28 H 0.134 0.866 29 H 0.151 0.849 30 H 0.158 0.842 31 H 0.192 0.808 32 H 0.171 0.829 33 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.975 -10.449 -2.391 10.900 hybrid contribution -0.024 0.569 -0.296 0.642 sum -1.999 -9.880 -2.688 10.433 Atomic orbital electron populations 1.69850 1.09338 1.31382 1.32387 1.26911 0.95443 1.05036 0.90877 0.85098 0.79723 0.75688 0.78993 1.17515 1.19125 1.18886 1.20049 0.99013 0.92024 1.38830 0.88929 1.17788 0.90097 0.93782 0.87704 1.20959 1.05012 0.92356 1.07655 1.20512 0.92476 0.98109 0.94362 1.18024 1.04060 0.89234 1.12655 1.18738 0.93202 0.92616 0.96950 1.21560 0.93729 0.97244 0.95511 1.21254 1.02213 0.91198 1.00567 1.17403 0.88833 0.83804 0.99933 1.91529 1.82365 1.47945 1.89146 1.19952 0.93396 0.96667 1.12348 1.17980 0.77787 0.82141 0.75745 1.93180 1.33776 1.92025 1.96265 1.93216 1.95220 1.54925 1.72304 1.93215 1.89135 1.94021 1.39484 1.21073 1.01351 0.89864 0.94488 1.17468 0.85029 0.94502 0.92355 1.91339 1.53489 1.97513 1.71606 1.20879 1.02814 0.96003 1.05760 0.89473 0.86568 0.84883 0.84168 0.80811 0.82926 0.87235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.82 10.96 21.83 0.24 -38.58 16 2 C 0.04 1.62 5.13 85.27 0.44 2.06 16 3 Si 0.98 34.33 29.60 68.60 2.03 36.36 16 4 H -0.25 -8.49 7.11 99.48 0.71 -7.79 16 5 H -0.27 -9.11 7.11 99.48 0.71 -8.41 16 6 H -0.26 -8.85 7.11 99.48 0.71 -8.14 16 7 C -0.47 -22.74 9.03 23.37 0.21 -22.53 16 8 H 0.09 4.20 7.91 -2.91 -0.02 4.17 16 9 C 0.11 5.34 5.57 -21.28 -0.12 5.22 16 10 C -0.24 -10.28 9.73 22.47 0.22 -10.07 16 11 C -0.04 -1.39 9.44 22.22 0.21 -1.18 16 12 C -0.24 -9.38 5.50 -19.83 -0.11 -9.49 16 13 C -0.01 -0.49 5.31 -20.03 -0.11 -0.59 16 14 C -0.06 -1.81 8.85 22.52 0.20 -1.61 16 15 C -0.13 -3.25 10.01 22.28 0.22 -3.03 16 16 C 0.12 3.17 7.14 22.47 0.16 3.33 16 17 F -0.13 -3.44 16.44 44.97 0.74 -2.70 16 18 C -0.22 -6.12 5.37 -19.85 -0.11 -6.23 16 19 C 0.52 13.72 3.02 71.24 0.22 13.93 16 20 F -0.17 -4.44 15.96 44.97 0.72 -3.72 16 21 F -0.18 -4.63 17.05 44.97 0.77 -3.86 16 22 F -0.18 -4.80 17.04 44.97 0.77 -4.04 16 23 C -0.05 -1.46 8.89 22.53 0.20 -1.26 16 24 C 0.13 5.65 7.10 22.33 0.16 5.80 16 25 F -0.16 -6.93 15.85 44.97 0.71 -6.21 16 26 C -0.23 -11.63 8.60 22.50 0.19 -11.44 16 27 H 0.29 12.72 8.30 -92.71 -0.77 11.95 16 28 H 0.12 4.53 8.06 -2.92 -0.02 4.51 16 29 H 0.13 4.17 8.04 -2.91 -0.02 4.14 16 30 H 0.14 4.05 7.77 -2.91 -0.02 4.03 16 31 H 0.17 3.07 8.06 -2.91 -0.02 3.05 16 32 H 0.15 4.20 7.13 -2.91 -0.02 4.18 16 33 H 0.11 5.79 6.16 -2.91 -0.02 5.78 16 Total: -1.00 -51.50 314.34 9.16 -42.34 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 1.20 Total: 17.48 kcal Atomic # 6 Polarization: -39.06 SS G_CDS: 1.99 Total: -37.07 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.24 Total: -38.58 kcal Atomic # 9 Polarization: -24.24 SS G_CDS: 3.70 Total: -20.53 kcal Atomic # 14 Polarization: 34.33 SS G_CDS: 2.03 Total: 36.36 kcal Total: -51.50 9.16 -42.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241095143.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -173.826 kcal (2) G-P(sol) polarization free energy of solvation -51.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds