Wall clock time and date at job start Tue Mar 31 2020 15:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30812 * 1 3 3 Si 1.86803 * 119.99860 * 2 1 4 4 H 1.48494 * 109.47002 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47428 * 299.99841 * 3 2 1 6 6 H 1.48506 * 109.46877 * 60.00199 * 3 2 1 7 7 C 1.40030 * 119.99936 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99530 * 164.35830 * 7 2 1 9 9 C 1.40808 * 120.00055 * 344.36160 * 7 2 1 10 10 C 1.40787 * 120.30150 * 332.99659 * 9 7 2 11 11 C 1.36350 * 120.02021 * 179.97438 * 10 9 7 12 12 C 1.39233 * 120.65014 * 0.02562 * 11 10 9 13 13 F 1.35104 * 119.68779 * 179.97438 * 12 11 10 14 14 C 1.38369 * 120.61751 * 359.71884 * 12 11 10 15 15 C 1.39078 * 119.95404 * 0.53400 * 14 12 11 16 16 C 1.47846 * 120.32208 * 179.74058 * 15 14 12 17 17 C 1.39689 * 120.12088 * 129.72404 * 16 15 14 18 18 C 1.37847 * 119.87550 * 180.02562 * 17 16 15 19 19 C 1.38661 * 120.12466 * 0.02562 * 18 17 16 20 20 F 1.35104 * 119.87973 * 179.71862 * 19 18 17 21 21 C 1.38628 * 120.24414 * 359.97438 * 19 18 17 22 22 C 1.50697 * 119.93678 * 179.97438 * 21 19 18 23 23 F 1.39897 * 109.47165 * 179.97438 * 22 21 19 24 24 F 1.39905 * 109.47543 * 299.99932 * 22 21 19 25 25 F 1.39905 * 109.47289 * 60.00126 * 22 21 19 26 26 C 1.37879 * 120.12180 * 0.02562 * 21 19 18 27 27 H 0.97001 * 119.99993 * 0.02562 * 1 2 3 28 28 H 1.07996 * 119.99702 * 359.97438 * 10 9 7 29 29 H 1.07995 * 119.67379 * 180.02562 * 11 10 9 30 30 H 1.07997 * 120.02389 * 180.30321 * 14 12 11 31 31 H 1.08004 * 120.06263 * 0.05100 * 17 16 15 32 32 H 1.08001 * 119.93423 * 180.02562 * 18 17 16 33 33 H 1.08002 * 120.05897 * 180.02562 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.7020 1.3464 0.0006 5 1 1.8834 2.3965 -1.2124 6 1 1.8833 2.3964 1.2126 7 6 2.0083 -1.2127 0.0005 8 1 3.0583 -1.2301 -0.2516 9 6 1.3433 -2.4094 0.3298 10 6 0.2161 -2.3869 1.1731 11 6 -0.4237 -3.5491 1.4877 12 6 0.0263 -4.7662 0.9831 13 9 -0.6221 -5.9061 1.3079 14 6 1.1282 -4.8187 0.1478 15 6 1.8033 -3.6493 -0.1854 16 6 2.9850 -3.6965 -1.0726 17 6 3.0671 -2.8450 -2.1769 18 6 4.1710 -2.8937 -3.0010 19 6 5.1985 -3.7862 -2.7359 20 9 6.2756 -3.8337 -3.5502 21 6 5.1223 -4.6336 -1.6414 22 6 6.2428 -5.6013 -1.3601 23 9 5.9414 -6.3430 -0.2129 24 9 6.3959 -6.4668 -2.4486 25 9 7.4316 -4.8921 -1.1574 26 6 4.0228 -4.5934 -0.8104 27 1 -0.4850 0.8401 -0.0004 28 1 -0.1419 -1.4489 1.5709 29 1 -1.2880 -3.5253 2.1348 30 1 1.4661 -5.7675 -0.2421 31 1 2.2673 -2.1494 -2.3843 32 1 4.2356 -2.2354 -3.8548 33 1 3.9647 -5.2538 0.0422 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241095394.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:45 Heat of formation + Delta-G solvation = -215.320722 kcal Electronic energy + Delta-G solvation = -27301.104843 eV Core-core repulsion = 22511.604347 eV Total energy + Delta-G solvation = -4789.500496 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -51.30090 -50.08350 -49.31483 -48.73820 -48.71881 -40.58464 -38.81627 -35.56587 -33.63844 -32.87526 -31.35779 -29.86885 -27.12202 -26.96027 -24.47885 -23.50664 -22.83448 -21.86033 -19.63958 -19.60694 -19.50744 -19.20765 -18.41085 -17.73951 -17.29082 -17.08561 -16.77225 -16.37857 -16.07009 -15.93575 -15.65475 -15.57866 -15.36311 -15.15340 -15.12802 -14.88122 -14.79960 -14.50027 -14.36661 -14.15249 -13.84272 -13.74609 -13.29544 -13.19093 -12.94793 -12.81902 -12.53538 -12.26729 -12.14086 -11.75199 -11.39992 -11.07326 -10.35910 -10.08422 -9.34453 -9.13817 -8.70947 -6.36621 -0.27219 0.00964 0.76581 0.92996 1.44160 1.48503 1.52458 1.56679 2.18768 2.37999 2.55117 2.63233 2.83528 3.06811 3.29857 3.54285 3.72706 3.76029 4.05768 4.19269 4.23216 4.28482 4.48057 4.59355 4.80638 4.93409 4.99329 5.03119 5.16298 5.24304 5.47811 5.50289 5.61823 5.80687 5.89035 6.00147 6.20174 6.53844 6.80922 6.86555 8.22573 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.010832 B = 0.005044 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.268903 B = 5549.341366 C = 7450.152941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.046 3.954 3 Si 0.969 3.031 4 H -0.257 1.257 5 H -0.264 1.264 6 H -0.269 1.269 7 C -0.458 4.458 8 H 0.089 0.911 9 C 0.103 3.897 10 C -0.152 4.152 11 C -0.125 4.125 12 C -0.059 4.059 13 F -0.171 7.171 14 C -0.094 4.094 15 C -0.175 4.175 16 C -0.007 4.007 17 C -0.040 4.040 18 C -0.143 4.143 19 C 0.121 3.879 20 F -0.133 7.133 21 C -0.225 4.225 22 C 0.518 3.482 23 F -0.173 7.173 24 F -0.176 7.176 25 F -0.177 7.177 26 C -0.057 4.057 27 H 0.294 0.706 28 H 0.118 0.882 29 H 0.117 0.883 30 H 0.124 0.876 31 H 0.145 0.855 32 H 0.172 0.828 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.389 -2.097 -4.087 8.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.172 4.172 3 Si 0.790 3.210 4 H -0.181 1.181 5 H -0.189 1.189 6 H -0.194 1.194 7 C -0.486 4.486 8 H 0.107 0.893 9 C 0.100 3.900 10 C -0.171 4.171 11 C -0.144 4.144 12 C -0.078 4.078 13 F -0.150 7.150 14 C -0.113 4.113 15 C -0.177 4.177 16 C -0.007 4.007 17 C -0.058 4.058 18 C -0.161 4.161 19 C 0.101 3.899 20 F -0.111 7.111 21 C -0.228 4.228 22 C 0.464 3.536 23 F -0.154 7.154 24 F -0.157 7.157 25 F -0.159 7.159 26 C -0.075 4.075 27 H 0.105 0.895 28 H 0.136 0.864 29 H 0.135 0.865 30 H 0.142 0.858 31 H 0.162 0.838 32 H 0.189 0.811 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 7.230 -2.012 -4.115 8.559 hybrid contribution 0.167 0.250 0.225 0.375 sum 7.397 -1.762 -3.891 8.541 Atomic orbital electron populations 1.69810 1.08884 1.31199 1.33195 1.26645 0.95276 1.04083 0.91227 0.85316 0.79777 0.76859 0.79022 1.18072 1.18902 1.19367 1.19766 0.97771 0.91019 1.40016 0.89330 1.17860 0.91111 0.92176 0.88829 1.20919 0.99076 0.96519 1.00582 1.20694 1.00599 0.91801 1.01330 1.17332 0.99250 0.81522 1.09725 1.91300 1.81543 1.49613 1.92559 1.20758 0.94787 0.98082 0.97624 1.18371 1.00416 0.92963 1.05915 1.18678 0.93053 0.94744 0.94214 1.21574 0.97106 0.95896 0.91220 1.21275 0.92405 0.99716 1.02738 1.17397 0.85634 0.97695 0.89162 1.91520 1.53026 1.95556 1.71045 1.19884 0.98279 1.03105 1.01499 1.17998 0.81651 0.79740 0.74234 1.93173 1.93017 1.78269 1.50941 1.93211 1.96049 1.71593 1.54893 1.93211 1.49448 1.78378 1.94837 1.21066 0.90382 0.98106 0.97933 0.89509 0.86415 0.86545 0.85845 0.83763 0.81092 0.83493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -35.67 10.99 21.84 0.24 -35.43 16 2 C 0.05 1.93 5.16 85.28 0.44 2.37 16 3 Si 0.97 32.54 29.59 68.60 2.03 34.57 16 4 H -0.26 -8.60 7.11 99.48 0.71 -7.89 16 5 H -0.26 -8.55 7.11 99.48 0.71 -7.85 16 6 H -0.27 -8.97 7.11 99.48 0.71 -8.26 16 7 C -0.46 -20.08 7.10 23.33 0.17 -19.92 16 8 H 0.09 3.77 6.65 -2.91 -0.02 3.75 16 9 C 0.10 4.68 5.55 -21.11 -0.12 4.57 16 10 C -0.15 -6.97 8.61 22.45 0.19 -6.78 16 11 C -0.13 -5.42 9.94 22.07 0.22 -5.21 16 12 C -0.06 -2.52 7.31 22.54 0.16 -2.35 16 13 F -0.17 -7.13 17.26 44.97 0.78 -6.35 16 14 C -0.09 -3.81 9.49 22.50 0.21 -3.59 16 15 C -0.17 -7.23 5.52 -19.62 -0.11 -7.34 16 16 C -0.01 -0.24 4.92 -20.04 -0.10 -0.33 16 17 C -0.04 -1.29 8.00 22.53 0.18 -1.11 16 18 C -0.14 -3.88 10.01 22.28 0.22 -3.66 16 19 C 0.12 3.50 7.14 22.46 0.16 3.66 16 20 F -0.13 -3.78 16.44 44.97 0.74 -3.04 16 21 C -0.23 -6.79 5.37 -19.86 -0.11 -6.90 16 22 C 0.52 14.83 3.02 71.23 0.22 15.05 16 23 F -0.17 -4.85 15.96 44.97 0.72 -4.13 16 24 F -0.18 -5.00 17.04 44.97 0.77 -4.23 16 25 F -0.18 -5.15 17.05 44.97 0.77 -4.38 16 26 C -0.06 -1.82 8.91 22.53 0.20 -1.62 16 27 H 0.29 11.75 8.30 -92.71 -0.77 10.98 16 28 H 0.12 5.57 6.26 -2.91 -0.02 5.56 16 29 H 0.12 4.56 8.06 -2.91 -0.02 4.54 16 30 H 0.12 4.45 8.05 -2.91 -0.02 4.43 16 31 H 0.14 4.85 7.30 -2.91 -0.02 4.83 16 32 H 0.17 3.55 8.06 -2.91 -0.02 3.53 16 33 H 0.15 4.49 7.14 -2.91 -0.02 4.46 16 Total: -1.00 -47.27 311.50 9.18 -38.09 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: 1.20 Total: 18.07 kcal Atomic # 6 Polarization: -35.11 SS G_CDS: 1.95 Total: -33.17 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 0.24 Total: -35.43 kcal Atomic # 9 Polarization: -25.90 SS G_CDS: 3.77 Total: -22.14 kcal Atomic # 14 Polarization: 32.54 SS G_CDS: 2.03 Total: 34.57 kcal Total: -47.27 9.18 -38.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241095394.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.232 kcal (2) G-P(sol) polarization free energy of solvation -47.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds