Wall clock time and date at job start Tue Mar 31 2020 15:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30798 * 1 3 3 Si 1.86807 * 119.99676 * 2 1 4 4 H 1.48500 * 109.47147 * 90.00470 * 3 2 1 5 5 H 1.48502 * 109.46921 * 210.00256 * 3 2 1 6 6 H 1.48497 * 109.47151 * 330.00515 * 3 2 1 7 7 C 1.40058 * 120.00055 * 180.27810 * 2 1 3 8 8 H 1.07991 * 120.00416 * 329.16555 * 7 2 1 9 9 C 1.40788 * 119.99535 * 149.16585 * 7 2 1 10 10 C 1.41034 * 120.35342 * 324.77144 * 9 7 2 11 11 F 1.35100 * 120.09598 * 0.02562 * 10 9 7 12 12 C 1.37725 * 119.80285 * 180.02562 * 10 9 7 13 13 C 1.38815 * 120.52591 * 0.02562 * 12 10 9 14 14 C 1.38133 * 120.71576 * 359.97438 * 13 12 10 15 15 C 1.39081 * 120.17552 * 359.71126 * 14 13 12 16 16 C 1.47858 * 120.26093 * 180.28257 * 15 14 13 17 17 C 1.39684 * 120.12175 * 130.02867 * 16 15 14 18 18 C 1.37843 * 119.87451 * 179.74619 * 17 16 15 19 19 C 1.38660 * 120.12262 * 0.54769 * 18 17 16 20 20 F 1.35102 * 119.87796 * 179.72557 * 19 18 17 21 21 C 1.38623 * 120.24932 * 359.70265 * 19 18 17 22 22 C 1.50694 * 119.94321 * 180.02562 * 21 19 18 23 23 F 1.39899 * 109.47435 * 179.97438 * 22 21 19 24 24 F 1.39896 * 109.47198 * 299.97943 * 22 21 19 25 25 F 1.39908 * 109.47027 * 59.97776 * 22 21 19 26 26 C 1.37887 * 120.11760 * 0.02562 * 21 19 18 27 27 H 0.96996 * 120.00264 * 174.91021 * 1 2 3 28 28 H 1.08004 * 119.73839 * 180.02562 * 12 10 9 29 29 H 1.08002 * 119.64700 * 179.97438 * 13 12 10 30 30 H 1.08002 * 119.91019 * 180.02562 * 14 13 12 31 31 H 1.08001 * 120.06253 * 0.02562 * 17 16 15 32 32 H 1.08000 * 119.93684 * 180.25041 * 18 17 16 33 33 H 1.08003 * 120.05968 * 180.02562 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2419 1.6178 0.0000 4 1 2.4895 2.0465 1.4001 5 1 3.5395 1.4403 -0.7001 6 1 1.4393 2.6528 -0.6999 7 6 2.0083 -1.2129 -0.0059 8 1 1.5829 -2.0844 0.4692 9 6 3.2669 -1.2959 -0.6313 10 6 3.5315 -0.5547 -1.8016 11 9 2.5762 0.2413 -2.3298 12 6 4.7666 -0.6448 -2.4043 13 6 5.7543 -1.4604 -1.8695 14 6 5.5185 -2.1958 -0.7242 15 6 4.2841 -2.1219 -0.0877 16 6 4.0318 -2.9034 1.1418 17 6 3.4974 -2.2796 2.2716 18 6 3.2593 -3.0141 3.4135 19 6 3.5598 -4.3673 3.4456 20 9 3.3296 -5.0814 4.5692 21 6 4.0951 -4.9905 2.3291 22 6 4.4186 -6.4617 2.3715 23 9 4.9430 -6.8598 1.1371 24 9 5.3599 -6.7034 3.3778 25 9 3.2531 -7.1880 2.6390 26 6 4.3322 -4.2667 1.1797 27 1 -0.4850 -0.8367 -0.0745 28 1 4.9682 -0.0764 -3.3003 29 1 6.7177 -1.5208 -2.3540 30 1 6.2965 -2.8258 -0.3190 31 1 3.2669 -1.2246 2.2491 32 1 2.8423 -2.5336 4.2862 33 1 4.7490 -4.7532 0.3102 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241095983.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:06 Heat of formation + Delta-G solvation = -202.840177 kcal Electronic energy + Delta-G solvation = -27635.332239 eV Core-core repulsion = 22846.372940 eV Total energy + Delta-G solvation = -4788.959299 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.12708 -48.87097 -47.82417 -47.57596 -47.53922 -39.23809 -37.27525 -34.06508 -32.26097 -31.55739 -30.24706 -28.23999 -25.89148 -25.20604 -23.09608 -22.11606 -21.07978 -20.40109 -18.69475 -18.43174 -18.35609 -18.20790 -17.12307 -16.18625 -16.02245 -15.58947 -15.40614 -15.00620 -14.90773 -14.49941 -14.40452 -14.20230 -13.98615 -13.93385 -13.71239 -13.67980 -13.62313 -13.26157 -13.09129 -12.68563 -12.49785 -12.42716 -11.89569 -11.76871 -11.38968 -11.06415 -10.96386 -10.72859 -10.53071 -10.11685 -9.67253 -9.23907 -9.12224 -8.68865 -7.91738 -7.61009 -7.50820 -4.78614 0.99354 1.25145 2.24801 2.34495 2.71327 3.16885 3.19748 3.36925 3.64411 3.74932 3.91028 4.02333 4.24519 4.29304 4.48269 4.86018 4.93642 5.14655 5.38857 5.47558 5.54485 5.71699 5.84726 5.90234 6.05437 6.16952 6.23022 6.36455 6.61998 6.73199 6.88016 7.05341 7.12509 7.28755 7.37129 7.43871 7.63847 8.02082 8.21073 8.42356 9.69179 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.016762 B = 0.004488 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.051879 B = 6237.697481 C = 7183.226872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.055 3.945 3 Si 1.065 2.935 4 H -0.290 1.290 5 H -0.260 1.260 6 H -0.275 1.275 7 C -0.517 4.517 8 H 0.090 0.910 9 C 0.088 3.912 10 C -0.012 4.012 11 F -0.148 7.148 12 C -0.103 4.103 13 C -0.225 4.225 14 C -0.063 4.063 15 C -0.171 4.171 16 C 0.011 3.989 17 C -0.035 4.035 18 C -0.156 4.156 19 C 0.121 3.879 20 F -0.136 7.136 21 C -0.223 4.223 22 C 0.514 3.486 23 F -0.175 7.175 24 F -0.177 7.177 25 F -0.177 7.177 26 C -0.061 4.061 27 H 0.292 0.708 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.149 0.851 32 H 0.141 0.859 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.036 -5.130 3.878 9.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.170 4.170 3 Si 0.890 3.110 4 H -0.218 1.218 5 H -0.185 1.185 6 H -0.201 1.201 7 C -0.543 4.543 8 H 0.108 0.892 9 C 0.084 3.916 10 C -0.032 4.032 11 F -0.127 7.127 12 C -0.123 4.123 13 C -0.244 4.244 14 C -0.081 4.081 15 C -0.172 4.172 16 C 0.011 3.989 17 C -0.053 4.053 18 C -0.175 4.175 19 C 0.101 3.899 20 F -0.114 7.114 21 C -0.225 4.225 22 C 0.460 3.540 23 F -0.157 7.157 24 F -0.159 7.159 25 F -0.158 7.158 26 C -0.079 4.079 27 H 0.104 0.896 28 H 0.125 0.875 29 H 0.123 0.877 30 H 0.121 0.879 31 H 0.166 0.834 32 H 0.159 0.841 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 6.651 -3.589 3.977 8.540 hybrid contribution -0.221 -2.081 -0.029 2.093 sum 6.430 -5.670 3.947 9.438 Atomic orbital electron populations 1.70513 1.08764 1.33315 1.27192 1.27408 0.95314 1.04555 0.89711 0.83699 0.77393 0.73143 0.76774 1.21823 1.18486 1.20059 1.20457 1.01232 0.99241 1.33378 0.89209 1.17539 0.92889 0.90873 0.90315 1.17636 0.87226 1.01798 0.96530 1.91095 1.63839 1.71964 1.85819 1.20693 0.92425 0.99605 0.99539 1.20109 0.98940 1.04948 1.00397 1.20728 0.95268 0.97457 0.94643 1.18219 0.94175 1.08145 0.96658 1.18703 0.95364 0.91267 0.93610 1.21574 0.92352 1.01328 0.90041 1.21067 1.04194 0.91425 1.00791 1.17277 1.00522 0.90325 0.81754 1.91508 1.92324 1.78161 1.49416 1.19815 1.12994 0.92102 0.97599 1.18109 0.74487 0.87847 0.73549 1.93162 1.86959 1.92136 1.43413 1.93205 1.65951 1.95447 1.61274 1.93215 1.48811 1.80075 1.93696 1.21057 0.97579 0.93576 0.95660 0.89616 0.87469 0.87666 0.87939 0.83359 0.84090 0.83999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.30 13.65 55.55 0.76 -18.55 16 2 C 0.06 1.32 4.68 -17.31 -0.08 1.24 16 3 Si 1.07 22.80 25.88 -169.99 -4.40 18.40 16 4 H -0.29 -5.83 7.11 56.52 0.40 -5.42 16 5 H -0.26 -5.56 5.39 56.52 0.30 -5.25 16 6 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.52 -12.22 7.02 -37.94 -0.27 -12.48 16 8 H 0.09 2.21 7.31 -52.49 -0.38 1.82 16 9 C 0.09 1.98 4.86 -106.49 -0.52 1.46 16 10 C -0.01 -0.28 5.07 -38.71 -0.20 -0.47 16 11 F -0.15 -3.47 12.92 2.25 0.03 -3.44 16 12 C -0.10 -2.04 9.99 -39.56 -0.40 -2.44 16 13 C -0.22 -4.06 10.03 -39.41 -0.40 -4.46 16 14 C -0.06 -1.14 9.48 -39.31 -0.37 -1.51 16 15 C -0.17 -3.41 5.52 -104.26 -0.58 -3.99 16 16 C 0.01 0.20 4.95 -104.89 -0.52 -0.32 16 17 C -0.04 -0.60 8.20 -39.19 -0.32 -0.92 16 18 C -0.16 -2.38 10.01 -39.57 -0.40 -2.78 16 19 C 0.12 1.92 7.14 -39.28 -0.28 1.64 16 20 F -0.14 -2.14 16.44 2.25 0.04 -2.10 16 21 C -0.22 -3.56 5.37 -104.61 -0.56 -4.12 16 22 C 0.51 7.78 3.02 36.00 0.11 7.89 16 23 F -0.18 -2.55 15.96 2.25 0.04 -2.52 16 24 F -0.18 -2.65 17.05 2.25 0.04 -2.61 16 25 F -0.18 -2.76 17.04 2.25 0.04 -2.72 16 26 C -0.06 -0.99 8.89 -39.18 -0.35 -1.34 16 27 H 0.29 7.07 8.73 -40.82 -0.36 6.71 16 28 H 0.11 1.87 8.06 -52.48 -0.42 1.44 16 29 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 30 H 0.10 1.60 8.03 -52.49 -0.42 1.17 16 31 H 0.15 2.59 7.33 -52.49 -0.38 2.20 16 32 H 0.14 1.80 8.06 -52.49 -0.42 1.38 16 33 H 0.14 2.16 7.13 -52.48 -0.37 1.79 16 LS Contribution 305.48 15.07 4.60 4.60 Total: -1.00 -23.95 305.48 -6.06 -30.01 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -2.08 Total: 1.53 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: -5.12 Total: -22.60 kcal Atomic # 7 Polarization: -19.30 SS G_CDS: 0.76 Total: -18.55 kcal Atomic # 9 Polarization: -13.57 SS G_CDS: 0.18 Total: -13.39 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -4.40 Total: 18.40 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -23.95 -6.06 -30.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241095983.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.832 kcal (2) G-P(sol) polarization free energy of solvation -23.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds