Wall clock time and date at job start Tue Mar 31 2020 15:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30798 * 1 3 3 Si 1.86807 * 119.99676 * 2 1 4 4 H 1.48500 * 109.47147 * 90.00470 * 3 2 1 5 5 H 1.48502 * 109.46921 * 210.00256 * 3 2 1 6 6 H 1.48497 * 109.47151 * 330.00515 * 3 2 1 7 7 C 1.40058 * 120.00055 * 180.27810 * 2 1 3 8 8 H 1.07991 * 120.00416 * 329.16555 * 7 2 1 9 9 C 1.40788 * 119.99535 * 149.16585 * 7 2 1 10 10 C 1.41034 * 120.35342 * 324.77144 * 9 7 2 11 11 F 1.35100 * 120.09598 * 0.02562 * 10 9 7 12 12 C 1.37725 * 119.80285 * 180.02562 * 10 9 7 13 13 C 1.38815 * 120.52591 * 0.02562 * 12 10 9 14 14 C 1.38133 * 120.71576 * 359.97438 * 13 12 10 15 15 C 1.39081 * 120.17552 * 359.71126 * 14 13 12 16 16 C 1.47858 * 120.26093 * 180.28257 * 15 14 13 17 17 C 1.39684 * 120.12175 * 130.02867 * 16 15 14 18 18 C 1.37843 * 119.87451 * 179.74619 * 17 16 15 19 19 C 1.38660 * 120.12262 * 0.54769 * 18 17 16 20 20 F 1.35102 * 119.87796 * 179.72557 * 19 18 17 21 21 C 1.38623 * 120.24932 * 359.70265 * 19 18 17 22 22 C 1.50694 * 119.94321 * 180.02562 * 21 19 18 23 23 F 1.39899 * 109.47435 * 179.97438 * 22 21 19 24 24 F 1.39896 * 109.47198 * 299.97943 * 22 21 19 25 25 F 1.39908 * 109.47027 * 59.97776 * 22 21 19 26 26 C 1.37887 * 120.11760 * 0.02562 * 21 19 18 27 27 H 0.96996 * 120.00264 * 174.91021 * 1 2 3 28 28 H 1.08004 * 119.73839 * 180.02562 * 12 10 9 29 29 H 1.08002 * 119.64700 * 179.97438 * 13 12 10 30 30 H 1.08002 * 119.91019 * 180.02562 * 14 13 12 31 31 H 1.08001 * 120.06253 * 0.02562 * 17 16 15 32 32 H 1.08000 * 119.93684 * 180.25041 * 18 17 16 33 33 H 1.08003 * 120.05968 * 180.02562 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2419 1.6178 0.0000 4 1 2.4895 2.0465 1.4001 5 1 3.5395 1.4403 -0.7001 6 1 1.4393 2.6528 -0.6999 7 6 2.0083 -1.2129 -0.0059 8 1 1.5829 -2.0844 0.4692 9 6 3.2669 -1.2959 -0.6313 10 6 3.5315 -0.5547 -1.8016 11 9 2.5762 0.2413 -2.3298 12 6 4.7666 -0.6448 -2.4043 13 6 5.7543 -1.4604 -1.8695 14 6 5.5185 -2.1958 -0.7242 15 6 4.2841 -2.1219 -0.0877 16 6 4.0318 -2.9034 1.1418 17 6 3.4974 -2.2796 2.2716 18 6 3.2593 -3.0141 3.4135 19 6 3.5598 -4.3673 3.4456 20 9 3.3296 -5.0814 4.5692 21 6 4.0951 -4.9905 2.3291 22 6 4.4186 -6.4617 2.3715 23 9 4.9430 -6.8598 1.1371 24 9 5.3599 -6.7034 3.3778 25 9 3.2531 -7.1880 2.6390 26 6 4.3322 -4.2667 1.1797 27 1 -0.4850 -0.8367 -0.0745 28 1 4.9682 -0.0764 -3.3003 29 1 6.7177 -1.5208 -2.3540 30 1 6.2965 -2.8258 -0.3190 31 1 3.2669 -1.2246 2.2491 32 1 2.8423 -2.5336 4.2862 33 1 4.7490 -4.7532 0.3102 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241095983.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:05 Heat of formation + Delta-G solvation = -211.529431 kcal Electronic energy + Delta-G solvation = -27635.709033 eV Core-core repulsion = 22846.372940 eV Total energy + Delta-G solvation = -4789.336094 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.33349 -50.14413 -49.55084 -48.76827 -48.75002 -40.62749 -38.77360 -35.75769 -33.66031 -32.90180 -31.85642 -29.69315 -27.16043 -26.82664 -24.47577 -23.46086 -22.67081 -21.85125 -20.40070 -19.63725 -19.59335 -19.49306 -18.45368 -17.66382 -17.43426 -17.08252 -16.83435 -16.59570 -16.47684 -15.70771 -15.60984 -15.59322 -15.38341 -15.21319 -15.18189 -14.92484 -14.90988 -14.84515 -14.41996 -14.20233 -13.95987 -13.83030 -13.30533 -13.22085 -12.99949 -12.57290 -12.42805 -12.24856 -12.05562 -11.77359 -11.30955 -10.94958 -10.41964 -10.11177 -9.60187 -9.23615 -9.10615 -6.53213 -0.34222 -0.05528 0.69828 0.73993 1.43344 1.48317 1.52113 1.67253 2.21721 2.31111 2.50870 2.56820 2.78696 3.01841 3.23854 3.28783 3.66424 3.72454 3.99428 4.10974 4.18376 4.29252 4.49613 4.54491 4.72655 4.74760 4.85667 4.96580 5.09303 5.36813 5.43605 5.46755 5.53190 5.67455 5.84567 5.87511 6.03897 6.27425 6.57156 6.74005 7.91718 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.016762 B = 0.004488 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.051879 B = 6237.697481 C = 7183.226872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.033 3.967 3 Si 1.086 2.914 4 H -0.272 1.272 5 H -0.259 1.259 6 H -0.281 1.281 7 C -0.542 4.542 8 H 0.066 0.934 9 C 0.069 3.931 10 C -0.045 4.045 11 F -0.162 7.162 12 C -0.110 4.110 13 C -0.201 4.201 14 C -0.067 4.067 15 C -0.161 4.161 16 C -0.012 4.012 17 C -0.041 4.041 18 C -0.149 4.149 19 C 0.122 3.878 20 F -0.133 7.133 21 C -0.227 4.227 22 C 0.519 3.481 23 F -0.170 7.170 24 F -0.175 7.175 25 F -0.180 7.180 26 C -0.052 4.052 27 H 0.283 0.717 28 H 0.131 0.869 29 H 0.145 0.855 30 H 0.137 0.863 31 H 0.140 0.860 32 H 0.166 0.834 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.920 -6.008 4.004 12.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.186 4.186 3 Si 0.908 3.092 4 H -0.199 1.199 5 H -0.184 1.184 6 H -0.207 1.207 7 C -0.569 4.569 8 H 0.084 0.916 9 C 0.065 3.935 10 C -0.064 4.064 11 F -0.141 7.141 12 C -0.129 4.129 13 C -0.220 4.220 14 C -0.085 4.085 15 C -0.163 4.163 16 C -0.012 4.012 17 C -0.059 4.059 18 C -0.167 4.167 19 C 0.102 3.898 20 F -0.112 7.112 21 C -0.229 4.229 22 C 0.465 3.535 23 F -0.151 7.151 24 F -0.156 7.156 25 F -0.161 7.161 26 C -0.070 4.070 27 H 0.094 0.906 28 H 0.149 0.851 29 H 0.163 0.837 30 H 0.155 0.845 31 H 0.157 0.843 32 H 0.184 0.816 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 9.551 -4.475 4.113 11.321 hybrid contribution -0.844 -1.989 -0.087 2.162 sum 8.707 -6.464 4.026 11.567 Atomic orbital electron populations 1.70579 1.09388 1.32637 1.31273 1.28045 0.95307 1.06312 0.88910 0.83454 0.76697 0.71384 0.77638 1.19857 1.18365 1.20704 1.20173 1.02456 0.98602 1.35694 0.91562 1.17762 0.93204 0.91976 0.90524 1.18055 0.88288 1.02762 0.97326 1.91058 1.64590 1.72423 1.86023 1.21074 0.91635 0.99959 1.00208 1.20671 0.99762 1.02153 0.99389 1.21161 0.95183 0.97635 0.94551 1.18563 0.94271 1.06520 0.96903 1.18727 0.97068 0.92047 0.93349 1.21560 0.92441 1.01230 0.90633 1.21254 1.03231 0.91198 1.01012 1.17399 1.00050 0.90516 0.81807 1.91519 1.92243 1.78103 1.49285 1.19911 1.12850 0.92646 0.97478 1.17947 0.74446 0.87291 0.73790 1.93173 1.86849 1.92038 1.43079 1.93213 1.65790 1.95383 1.61196 1.93214 1.49075 1.80066 1.93743 1.21096 0.96876 0.92828 0.96187 0.90613 0.85137 0.83695 0.84520 0.84264 0.81634 0.82635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.76 13.65 21.85 0.30 -42.46 16 2 C 0.03 1.67 4.68 85.29 0.40 2.07 16 3 Si 1.09 46.86 25.88 68.60 1.78 48.64 16 4 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 5 H -0.26 -10.99 5.39 99.48 0.54 -10.45 16 6 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.54 -26.57 7.02 23.34 0.16 -26.41 16 8 H 0.07 3.45 7.31 -2.92 -0.02 3.43 16 9 C 0.07 3.10 4.86 -21.07 -0.10 3.00 16 10 C -0.04 -1.99 5.07 22.83 0.12 -1.87 16 11 F -0.16 -7.69 12.92 44.97 0.58 -7.11 16 12 C -0.11 -4.04 9.99 22.29 0.22 -3.81 16 13 C -0.20 -6.35 10.03 22.38 0.22 -6.12 16 14 C -0.07 -2.18 9.48 22.45 0.21 -1.97 16 15 C -0.16 -6.19 5.52 -19.63 -0.11 -6.30 16 16 C -0.01 -0.41 4.95 -20.04 -0.10 -0.50 16 17 C -0.04 -1.36 8.20 22.53 0.18 -1.17 16 18 C -0.15 -4.31 10.01 22.28 0.22 -4.09 16 19 C 0.12 3.63 7.14 22.46 0.16 3.79 16 20 F -0.13 -3.91 16.44 44.97 0.74 -3.17 16 21 C -0.23 -6.75 5.37 -19.86 -0.11 -6.85 16 22 C 0.52 14.51 3.02 71.23 0.22 14.72 16 23 F -0.17 -4.50 15.96 44.97 0.72 -3.78 16 24 F -0.17 -4.78 17.05 44.97 0.77 -4.01 16 25 F -0.18 -5.26 17.04 44.97 0.77 -4.49 16 26 C -0.05 -1.59 8.89 22.53 0.20 -1.39 16 27 H 0.28 14.69 8.73 -92.71 -0.81 13.88 16 28 H 0.13 4.12 8.06 -2.91 -0.02 4.09 16 29 H 0.15 3.50 8.06 -2.91 -0.02 3.47 16 30 H 0.14 3.53 8.03 -2.91 -0.02 3.51 16 31 H 0.14 4.92 7.33 -2.91 -0.02 4.89 16 32 H 0.17 3.90 8.06 -2.91 -0.02 3.88 16 33 H 0.16 4.27 7.13 -2.91 -0.02 4.24 16 Total: -1.00 -52.40 305.48 8.53 -43.86 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: 0.98 Total: 9.44 kcal Atomic # 6 Polarization: -38.81 SS G_CDS: 1.91 Total: -36.90 kcal Atomic # 7 Polarization: -42.76 SS G_CDS: 0.30 Total: -42.46 kcal Atomic # 9 Polarization: -26.15 SS G_CDS: 3.57 Total: -22.58 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 1.78 Total: 48.64 kcal Total: -52.40 8.53 -43.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241095983.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.667 kcal (2) G-P(sol) polarization free energy of solvation -52.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds