Wall clock time and date at job start Tue Mar 31 2020 15:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30783 * 1 3 3 Si 1.86806 * 119.99901 * 2 1 4 4 H 1.48500 * 109.47062 * 269.99921 * 3 2 1 5 5 H 1.48494 * 109.47096 * 29.99716 * 3 2 1 6 6 H 1.48497 * 109.46988 * 149.99881 * 3 2 1 7 7 C 1.40052 * 120.00167 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99899 * 164.22303 * 7 2 1 9 9 C 1.40860 * 120.00064 * 344.22634 * 7 2 1 10 10 C 1.40723 * 120.31873 * 334.09633 * 9 7 2 11 11 C 1.37632 * 119.84919 * 179.97438 * 10 9 7 12 12 F 1.35096 * 119.74586 * 180.02562 * 11 10 9 13 13 C 1.39196 * 120.50397 * 0.02562 * 11 10 9 14 14 C 1.37997 * 120.65625 * 359.67482 * 13 11 10 15 15 C 1.39172 * 120.12673 * 0.60706 * 14 13 11 16 16 C 1.47826 * 120.25000 * 179.69750 * 15 14 13 17 17 C 1.39708 * 120.12219 * 129.74631 * 16 15 14 18 18 C 1.37839 * 119.87138 * 179.97438 * 17 16 15 19 19 C 1.38668 * 120.12498 * 0.02562 * 18 17 16 20 20 F 1.35101 * 119.87276 * 180.27510 * 19 18 17 21 21 C 1.38627 * 120.25175 * 359.97438 * 19 18 17 22 22 C 1.50696 * 119.94040 * 180.02562 * 21 19 18 23 23 F 1.39899 * 109.47300 * 180.02562 * 22 21 19 24 24 F 1.39902 * 109.47015 * 300.00189 * 22 21 19 25 25 F 1.39896 * 109.47132 * 60.00158 * 22 21 19 26 26 C 1.37884 * 120.12354 * 359.97438 * 21 19 18 27 27 H 0.96991 * 120.00056 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.07570 * 359.95364 * 10 9 7 29 29 H 1.08000 * 119.66996 * 179.97438 * 13 11 10 30 30 H 1.07995 * 119.93606 * 180.32506 * 14 13 11 31 31 H 1.07999 * 120.06942 * 359.95559 * 17 16 15 32 32 H 1.08006 * 119.93730 * 180.02562 * 18 17 16 33 33 H 1.08001 * 120.06459 * 180.02562 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2418 1.6178 0.0000 4 1 2.4893 2.0465 -1.4001 5 1 1.4393 2.6527 0.6999 6 1 3.5393 1.4402 0.7001 7 6 2.0081 -1.2129 0.0005 8 1 3.0576 -1.2305 -0.2538 9 6 1.3437 -2.4097 0.3327 10 6 0.2050 -2.3842 1.1591 11 6 -0.4371 -3.5593 1.4771 12 9 -1.5304 -3.5324 2.2703 13 6 0.0314 -4.7753 0.9877 14 6 1.1425 -4.8238 0.1707 15 6 1.8158 -3.6524 -0.1631 16 6 3.0102 -3.7020 -1.0326 17 6 3.1042 -2.8599 -2.1434 18 6 4.2205 -2.9100 -2.9504 19 6 5.2488 -3.7945 -2.6619 20 9 6.3430 -3.8355 -3.4531 21 6 5.1609 -4.6325 -1.5610 22 6 6.2827 -5.5906 -1.2536 23 9 5.9676 -6.3245 -0.1050 24 9 6.4579 -6.4648 -2.3316 25 9 7.4638 -4.8722 -1.0390 26 6 4.0494 -4.5902 -0.7461 27 1 -0.4850 0.8400 0.0004 28 1 -0.1641 -1.4447 1.5433 29 1 -0.4826 -5.6893 1.2461 30 1 1.4928 -5.7731 -0.2067 31 1 2.3037 -2.1711 -2.3696 32 1 4.2945 -2.2592 -3.8092 33 1 3.9821 -5.2431 0.1115 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241096092.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:50 Heat of formation + Delta-G solvation = -210.230078 kcal Electronic energy + Delta-G solvation = -27262.816314 eV Core-core repulsion = 22473.536565 eV Total energy + Delta-G solvation = -4789.279749 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.08458 -48.82117 -47.82742 -47.53146 -47.50052 -39.16413 -37.20428 -34.03869 -32.13618 -31.35153 -30.02258 -27.90345 -25.87894 -25.65205 -22.93958 -22.08562 -21.36611 -20.30255 -18.39091 -18.30961 -18.21649 -17.77563 -17.01566 -16.18456 -15.86614 -15.51508 -15.24202 -15.07563 -14.72010 -14.48494 -14.44957 -14.36451 -13.95705 -13.94320 -13.67193 -13.60302 -13.34270 -13.06493 -12.96226 -12.66994 -12.56956 -12.29511 -11.85091 -11.79634 -11.34326 -11.24267 -10.96953 -10.86384 -10.60532 -10.25299 -9.89647 -9.49552 -9.06738 -8.53092 -7.84884 -7.39144 -7.07402 -4.76325 1.06555 1.32509 2.39727 2.55971 2.76420 2.90267 2.91895 2.98599 3.66915 3.72348 3.80057 4.07543 4.24456 4.34897 4.52897 4.95611 5.19202 5.28945 5.46724 5.47520 5.55974 5.89639 5.98621 6.11915 6.15841 6.26309 6.43946 6.62429 6.70583 6.80476 6.94035 7.02581 7.22005 7.41055 7.50831 7.62622 7.87996 8.21033 8.45766 8.50247 9.79293 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.012201 B = 0.004666 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.429842 B = 5999.818338 C = 7616.937858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.076 3.924 3 Si 0.908 3.092 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.445 4.445 8 H 0.089 0.911 9 C 0.150 3.850 10 C -0.194 4.194 11 C 0.113 3.887 12 F -0.165 7.165 13 C -0.276 4.276 14 C -0.039 4.039 15 C -0.204 4.204 16 C 0.016 3.984 17 C -0.041 4.041 18 C -0.156 4.156 19 C 0.116 3.884 20 F -0.137 7.137 21 C -0.222 4.222 22 C 0.514 3.486 23 F -0.175 7.175 24 F -0.178 7.178 25 F -0.177 7.177 26 C -0.063 4.063 27 H 0.288 0.712 28 H 0.133 0.867 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.151 0.849 32 H 0.140 0.860 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.524 -3.760 -3.544 8.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.145 4.145 3 Si 0.731 3.269 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.180 1.180 7 C -0.472 4.472 8 H 0.107 0.893 9 C 0.147 3.853 10 C -0.214 4.214 11 C 0.094 3.906 12 F -0.144 7.144 13 C -0.296 4.296 14 C -0.058 4.058 15 C -0.205 4.205 16 C 0.016 3.984 17 C -0.059 4.059 18 C -0.175 4.175 19 C 0.097 3.903 20 F -0.116 7.116 21 C -0.224 4.224 22 C 0.460 3.540 23 F -0.157 7.157 24 F -0.159 7.159 25 F -0.158 7.158 26 C -0.081 4.081 27 H 0.099 0.901 28 H 0.150 0.850 29 H 0.122 0.878 30 H 0.121 0.879 31 H 0.168 0.832 32 H 0.158 0.842 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 6.343 -3.619 -3.548 8.119 hybrid contribution 0.458 0.603 0.060 0.759 sum 6.802 -3.016 -3.488 8.217 Atomic orbital electron populations 1.69762 1.07770 1.30256 1.31990 1.26031 0.94783 1.01773 0.91926 0.86278 0.80825 0.80032 0.79748 1.18990 1.19738 1.18028 1.19639 0.97778 0.90547 1.39284 0.89293 1.17221 0.89560 0.91163 0.87345 1.21279 1.00416 0.96084 1.03660 1.17799 0.84687 0.95248 0.92912 1.91351 1.52860 1.97605 1.72576 1.20219 1.03508 0.95378 1.10458 1.20396 0.94035 0.95999 0.95341 1.18413 1.00160 0.94099 1.07875 1.18777 0.93190 0.92978 0.93456 1.21642 0.96516 0.96337 0.91403 1.21063 0.93759 1.00092 1.02597 1.17271 0.85078 0.98107 0.89848 1.91501 1.51795 1.95609 1.72650 1.19821 0.98102 1.03156 1.01331 1.18132 0.81951 0.79743 0.74216 1.93163 1.92737 1.78731 1.51037 1.93204 1.95864 1.71160 1.55721 1.93208 1.50100 1.77864 1.94670 1.21098 0.90507 0.98676 0.97800 0.90055 0.84964 0.87832 0.87925 0.83170 0.84234 0.84036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.54 10.93 55.55 0.61 -16.93 16 2 C 0.08 1.64 5.17 -17.32 -0.09 1.55 16 3 Si 0.91 16.45 29.59 -169.99 -5.03 11.42 16 4 H -0.27 -4.72 7.11 56.52 0.40 -4.31 16 5 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 6 H -0.26 -4.71 7.11 56.52 0.40 -4.31 16 7 C -0.44 -9.89 7.13 -37.91 -0.27 -10.16 16 8 H 0.09 1.91 6.58 -52.48 -0.35 1.57 16 9 C 0.15 3.43 5.56 -106.57 -0.59 2.84 16 10 C -0.19 -4.59 8.64 -38.86 -0.34 -4.93 16 11 C 0.11 2.54 7.28 -39.45 -0.29 2.25 16 12 F -0.16 -3.64 17.26 2.25 0.04 -3.60 16 13 C -0.28 -5.65 10.01 -39.31 -0.39 -6.04 16 14 C -0.04 -0.77 9.50 -39.32 -0.37 -1.14 16 15 C -0.20 -4.18 5.52 -104.23 -0.58 -4.76 16 16 C 0.02 0.29 4.92 -104.89 -0.52 -0.22 16 17 C -0.04 -0.69 7.97 -39.18 -0.31 -1.00 16 18 C -0.16 -2.32 10.01 -39.57 -0.40 -2.72 16 19 C 0.12 1.82 7.14 -39.28 -0.28 1.54 16 20 F -0.14 -2.13 16.44 2.25 0.04 -2.10 16 21 C -0.22 -3.52 5.37 -104.61 -0.56 -4.08 16 22 C 0.51 7.76 3.02 36.00 0.11 7.87 16 23 F -0.18 -2.57 15.96 2.25 0.04 -2.53 16 24 F -0.18 -2.68 17.05 2.25 0.04 -2.64 16 25 F -0.18 -2.73 17.04 2.25 0.04 -2.69 16 26 C -0.06 -1.03 8.90 -39.18 -0.35 -1.38 16 27 H 0.29 5.95 8.29 -40.82 -0.34 5.61 16 28 H 0.13 3.26 6.19 -52.49 -0.32 2.94 16 29 H 0.10 1.91 8.06 -52.49 -0.42 1.49 16 30 H 0.10 1.72 8.04 -52.49 -0.42 1.30 16 31 H 0.15 2.58 7.30 -52.49 -0.38 2.20 16 32 H 0.14 1.71 8.06 -52.48 -0.42 1.29 16 33 H 0.14 2.18 7.14 -52.49 -0.37 1.81 16 LS Contribution 311.38 15.07 4.69 4.69 Total: -1.00 -23.09 311.38 -6.60 -29.69 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -1.83 Total: 5.06 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: -5.22 Total: -20.38 kcal Atomic # 7 Polarization: -17.54 SS G_CDS: 0.61 Total: -16.93 kcal Atomic # 9 Polarization: -13.74 SS G_CDS: 0.19 Total: -13.55 kcal Atomic # 14 Polarization: 16.45 SS G_CDS: -5.03 Total: 11.42 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -23.09 -6.60 -29.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241096092.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.543 kcal (2) G-P(sol) polarization free energy of solvation -23.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds