Wall clock time and date at job start Tue Mar 31 2020 15:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30783 * 1 3 3 Si 1.86806 * 119.99901 * 2 1 4 4 H 1.48500 * 109.47062 * 269.99921 * 3 2 1 5 5 H 1.48494 * 109.47096 * 29.99716 * 3 2 1 6 6 H 1.48497 * 109.46988 * 149.99881 * 3 2 1 7 7 C 1.40052 * 120.00167 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99899 * 164.22303 * 7 2 1 9 9 C 1.40860 * 120.00064 * 344.22634 * 7 2 1 10 10 C 1.40723 * 120.31873 * 334.09633 * 9 7 2 11 11 C 1.37632 * 119.84919 * 179.97438 * 10 9 7 12 12 F 1.35096 * 119.74586 * 180.02562 * 11 10 9 13 13 C 1.39196 * 120.50397 * 0.02562 * 11 10 9 14 14 C 1.37997 * 120.65625 * 359.67482 * 13 11 10 15 15 C 1.39172 * 120.12673 * 0.60706 * 14 13 11 16 16 C 1.47826 * 120.25000 * 179.69750 * 15 14 13 17 17 C 1.39708 * 120.12219 * 129.74631 * 16 15 14 18 18 C 1.37839 * 119.87138 * 179.97438 * 17 16 15 19 19 C 1.38668 * 120.12498 * 0.02562 * 18 17 16 20 20 F 1.35101 * 119.87276 * 180.27510 * 19 18 17 21 21 C 1.38627 * 120.25175 * 359.97438 * 19 18 17 22 22 C 1.50696 * 119.94040 * 180.02562 * 21 19 18 23 23 F 1.39899 * 109.47300 * 180.02562 * 22 21 19 24 24 F 1.39902 * 109.47015 * 300.00189 * 22 21 19 25 25 F 1.39896 * 109.47132 * 60.00158 * 22 21 19 26 26 C 1.37884 * 120.12354 * 359.97438 * 21 19 18 27 27 H 0.96991 * 120.00056 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.07570 * 359.95364 * 10 9 7 29 29 H 1.08000 * 119.66996 * 179.97438 * 13 11 10 30 30 H 1.07995 * 119.93606 * 180.32506 * 14 13 11 31 31 H 1.07999 * 120.06942 * 359.95559 * 17 16 15 32 32 H 1.08006 * 119.93730 * 180.02562 * 18 17 16 33 33 H 1.08001 * 120.06459 * 180.02562 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2418 1.6178 0.0000 4 1 2.4893 2.0465 -1.4001 5 1 1.4393 2.6527 0.6999 6 1 3.5393 1.4402 0.7001 7 6 2.0081 -1.2129 0.0005 8 1 3.0576 -1.2305 -0.2538 9 6 1.3437 -2.4097 0.3327 10 6 0.2050 -2.3842 1.1591 11 6 -0.4371 -3.5593 1.4771 12 9 -1.5304 -3.5324 2.2703 13 6 0.0314 -4.7753 0.9877 14 6 1.1425 -4.8238 0.1707 15 6 1.8158 -3.6524 -0.1631 16 6 3.0102 -3.7020 -1.0326 17 6 3.1042 -2.8599 -2.1434 18 6 4.2205 -2.9100 -2.9504 19 6 5.2488 -3.7945 -2.6619 20 9 6.3430 -3.8355 -3.4531 21 6 5.1609 -4.6325 -1.5610 22 6 6.2827 -5.5906 -1.2536 23 9 5.9676 -6.3245 -0.1050 24 9 6.4579 -6.4648 -2.3316 25 9 7.4638 -4.8722 -1.0390 26 6 4.0494 -4.5902 -0.7461 27 1 -0.4850 0.8400 0.0004 28 1 -0.1641 -1.4447 1.5433 29 1 -0.4826 -5.6893 1.2461 30 1 1.4928 -5.7731 -0.2067 31 1 2.3037 -2.1711 -2.3696 32 1 4.2945 -2.2592 -3.8092 33 1 3.9821 -5.2431 0.1115 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241096092.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:50 Heat of formation + Delta-G solvation = -216.669480 kcal Electronic energy + Delta-G solvation = -27263.095548 eV Core-core repulsion = 22473.536565 eV Total energy + Delta-G solvation = -4789.558983 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.27886 -50.06488 -49.57336 -48.71449 -48.69875 -40.55499 -38.73894 -35.66651 -33.49810 -32.71578 -31.66375 -29.42839 -27.38207 -27.02623 -24.31788 -23.47302 -22.93799 -21.78910 -19.63217 -19.58448 -19.49428 -19.31619 -18.30964 -17.80562 -17.23431 -16.78124 -16.70734 -16.62291 -16.33689 -16.22823 -15.63747 -15.55717 -15.17342 -15.13082 -14.89671 -14.85899 -14.79712 -14.50908 -14.34775 -14.17592 -14.04165 -13.61509 -13.40067 -13.24681 -12.85245 -12.76475 -12.47317 -12.20620 -12.09062 -11.85460 -11.50945 -11.10029 -10.33072 -9.93898 -9.52181 -8.99901 -8.68194 -6.44715 -0.25024 0.03445 0.79347 0.93240 1.41244 1.48109 1.54391 1.54902 2.16274 2.39182 2.57077 2.64315 2.85947 3.09547 3.32105 3.53287 3.74961 3.78993 3.92886 4.19987 4.27098 4.44674 4.55810 4.61768 4.83619 4.92202 4.99589 5.03230 5.15317 5.23484 5.52781 5.59846 5.63123 5.76404 5.88900 5.97918 6.21736 6.53271 6.79729 6.83461 8.20565 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.012201 B = 0.004666 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.429842 B = 5999.818338 C = 7616.937858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.043 3.957 3 Si 0.969 3.031 4 H -0.255 1.255 5 H -0.272 1.272 6 H -0.259 1.259 7 C -0.461 4.461 8 H 0.092 0.908 9 C 0.127 3.873 10 C -0.222 4.222 11 C 0.096 3.904 12 F -0.168 7.168 13 C -0.276 4.276 14 C -0.039 4.039 15 C -0.199 4.199 16 C -0.004 4.004 17 C -0.043 4.043 18 C -0.144 4.144 19 C 0.119 3.881 20 F -0.134 7.134 21 C -0.225 4.225 22 C 0.518 3.482 23 F -0.172 7.172 24 F -0.176 7.176 25 F -0.178 7.178 26 C -0.055 4.055 27 H 0.293 0.707 28 H 0.111 0.889 29 H 0.126 0.874 30 H 0.135 0.865 31 H 0.142 0.858 32 H 0.169 0.831 33 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.148 -4.322 -4.637 10.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.175 4.175 3 Si 0.790 3.210 4 H -0.179 1.179 5 H -0.197 1.197 6 H -0.183 1.183 7 C -0.489 4.489 8 H 0.110 0.890 9 C 0.124 3.876 10 C -0.243 4.243 11 C 0.077 3.923 12 F -0.147 7.147 13 C -0.296 4.296 14 C -0.057 4.057 15 C -0.200 4.200 16 C -0.005 4.005 17 C -0.061 4.061 18 C -0.162 4.162 19 C 0.100 3.900 20 F -0.113 7.113 21 C -0.227 4.227 22 C 0.464 3.536 23 F -0.153 7.153 24 F -0.158 7.158 25 F -0.160 7.160 26 C -0.073 4.073 27 H 0.104 0.896 28 H 0.129 0.871 29 H 0.144 0.856 30 H 0.153 0.847 31 H 0.159 0.841 32 H 0.187 0.813 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 7.968 -4.195 -4.646 10.133 hybrid contribution 0.007 0.671 0.351 0.757 sum 7.975 -3.525 -4.295 9.720 Atomic orbital electron populations 1.69824 1.09117 1.31176 1.33166 1.26727 0.95238 1.04399 0.91132 0.85360 0.79248 0.76360 0.80015 1.17924 1.19689 1.18266 1.19772 0.97912 0.91019 1.40173 0.88968 1.17520 0.89755 0.92626 0.87735 1.21219 1.01905 0.95771 1.05360 1.18046 0.84877 0.95906 0.93471 1.91331 1.52995 1.97663 1.72707 1.20511 1.03757 0.95290 1.10042 1.20756 0.93303 0.97094 0.94582 1.18689 1.00636 0.93586 1.07098 1.18706 0.93096 0.94621 0.94030 1.21578 0.97024 0.95943 0.91558 1.21255 0.92443 0.99755 1.02768 1.17397 0.85159 0.97874 0.89615 1.91516 1.51662 1.95553 1.72520 1.19894 0.98136 1.03383 1.01323 1.17996 0.81640 0.79622 0.74347 1.93173 1.92689 1.78606 1.50838 1.93210 1.95831 1.71055 1.55677 1.93209 1.50139 1.77942 1.94687 1.21088 0.90112 0.98097 0.98008 0.89644 0.87063 0.85608 0.84694 0.84057 0.81345 0.83096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -37.74 10.93 21.85 0.24 -37.51 16 2 C 0.04 1.89 5.17 85.29 0.44 2.33 16 3 Si 0.97 33.61 29.59 68.60 2.03 35.64 16 4 H -0.26 -8.37 7.11 99.48 0.71 -7.66 16 5 H -0.27 -9.32 7.11 99.48 0.71 -8.61 16 6 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 7 C -0.46 -20.76 7.13 23.35 0.17 -20.60 16 8 H 0.09 3.96 6.58 -2.91 -0.02 3.94 16 9 C 0.13 5.88 5.56 -21.13 -0.12 5.76 16 10 C -0.22 -10.88 8.64 22.73 0.20 -10.69 16 11 C 0.10 4.40 7.28 22.36 0.16 4.56 16 12 F -0.17 -7.55 17.26 44.97 0.78 -6.78 16 13 C -0.28 -11.06 10.01 22.44 0.22 -10.84 16 14 C -0.04 -1.47 9.50 22.44 0.21 -1.26 16 15 C -0.20 -8.02 5.52 -19.61 -0.11 -8.13 16 16 C 0.00 -0.15 4.92 -20.04 -0.10 -0.25 16 17 C -0.04 -1.37 7.97 22.53 0.18 -1.19 16 18 C -0.14 -3.87 10.01 22.28 0.22 -3.65 16 19 C 0.12 3.39 7.14 22.47 0.16 3.55 16 20 F -0.13 -3.77 16.44 44.97 0.74 -3.03 16 21 C -0.23 -6.57 5.37 -19.86 -0.11 -6.68 16 22 C 0.52 14.36 3.02 71.23 0.22 14.57 16 23 F -0.17 -4.61 15.96 44.97 0.72 -3.89 16 24 F -0.18 -4.85 17.05 44.97 0.77 -4.08 16 25 F -0.18 -5.08 17.04 44.97 0.77 -4.31 16 26 C -0.05 -1.68 8.90 22.53 0.20 -1.48 16 27 H 0.29 12.45 8.29 -92.72 -0.77 11.68 16 28 H 0.11 5.81 6.19 -2.91 -0.02 5.79 16 29 H 0.13 4.40 8.06 -2.91 -0.02 4.37 16 30 H 0.14 4.12 8.04 -2.91 -0.02 4.10 16 31 H 0.14 4.78 7.30 -2.91 -0.02 4.76 16 32 H 0.17 3.52 8.06 -2.91 -0.02 3.50 16 33 H 0.15 4.28 7.14 -2.91 -0.02 4.26 16 Total: -1.00 -49.27 311.38 9.19 -40.08 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 1.20 Total: 17.86 kcal Atomic # 6 Polarization: -35.94 SS G_CDS: 1.95 Total: -33.99 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.24 Total: -37.51 kcal Atomic # 9 Polarization: -25.86 SS G_CDS: 3.77 Total: -22.09 kcal Atomic # 14 Polarization: 33.61 SS G_CDS: 2.03 Total: 35.64 kcal Total: -49.27 9.19 -40.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241096092.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.591 kcal (2) G-P(sol) polarization free energy of solvation -49.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds