Wall clock time and date at job start Tue Mar 31 2020 15:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30840 * 1 3 3 Si 1.86798 * 119.99740 * 2 1 4 4 H 1.48497 * 109.47420 * 270.00299 * 3 2 1 5 5 H 1.48502 * 109.47272 * 30.00458 * 3 2 1 6 6 H 1.48500 * 109.46971 * 149.99938 * 3 2 1 7 7 C 1.39919 * 120.00127 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00299 * 162.75194 * 7 2 1 9 9 C 1.41423 * 120.00083 * 342.74894 * 7 2 1 10 10 C 1.40751 * 120.17331 * 334.79007 * 9 7 2 11 11 C 1.37909 * 119.96878 * 180.02562 * 10 9 7 12 12 F 1.35095 * 119.83563 * 179.97438 * 11 10 9 13 13 C 1.38659 * 120.32410 * 359.74036 * 11 10 9 14 14 C 1.39656 * 120.35311 * 0.51763 * 13 11 10 15 15 C 1.48407 * 119.99004 * 179.76518 * 14 13 11 16 16 C 1.39356 * 120.09617 * 179.97438 * 15 14 13 17 17 C 1.37953 * 119.90394 * 180.23184 * 16 15 14 18 18 C 1.38573 * 120.09619 * 359.51459 * 17 16 15 19 19 F 1.35096 * 119.90611 * 180.25490 * 18 17 16 20 20 C 1.38528 * 120.18792 * 0.27625 * 18 17 16 21 21 C 1.50701 * 119.95527 * 179.97438 * 20 18 17 22 22 F 1.39895 * 109.47293 * 180.02562 * 21 20 18 23 23 F 1.39906 * 109.46593 * 300.00168 * 21 20 18 24 24 F 1.39904 * 109.47008 * 59.99716 * 21 20 18 25 25 C 1.37996 * 120.09366 * 359.95786 * 20 18 17 26 26 C 1.38779 * 120.02583 * 359.48104 * 14 13 11 27 27 H 0.96996 * 120.00080 * 359.97438 * 1 2 3 28 28 H 1.07994 * 120.01698 * 359.97438 * 10 9 7 29 29 H 1.08005 * 119.82196 * 180.27819 * 13 11 10 30 30 H 1.07998 * 120.05246 * 0.02562 * 16 15 14 31 31 H 1.08007 * 119.95563 * 179.79066 * 17 16 15 32 32 H 1.08005 * 120.04656 * 180.02562 * 25 20 18 33 33 H 1.08004 * 120.16731 * 180.27383 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0465 -1.4000 5 1 1.4398 2.6527 0.7001 6 1 3.5399 1.4402 0.7001 7 6 2.0080 -1.2117 -0.0005 8 1 3.0516 -1.2327 -0.2779 9 6 1.3487 -2.4091 0.3621 10 6 0.2200 -2.3687 1.2020 11 6 -0.4195 -3.5390 1.5535 12 9 -1.5023 -3.4972 2.3602 13 6 0.0407 -4.7579 1.0789 14 6 1.1625 -4.8142 0.2491 15 6 1.6512 -6.1236 -0.2499 16 6 2.7701 -6.1822 -1.0785 17 6 3.2181 -7.4011 -1.5440 18 6 2.5631 -8.5670 -1.1807 19 9 3.0082 -9.7591 -1.6347 20 6 1.4531 -8.5137 -0.3537 21 6 0.7445 -9.7848 0.0376 22 9 -0.3376 -9.4783 0.8696 23 9 0.2794 -10.4323 -1.1121 24 9 1.6335 -10.6238 0.7180 25 6 0.9954 -7.2982 0.1125 26 6 1.8172 -3.6455 -0.1138 27 1 -0.4850 0.8400 0.0004 28 1 -0.1447 -1.4219 1.5718 29 1 -0.4690 -5.6691 1.3557 30 1 3.2839 -5.2745 -1.3586 31 1 4.0832 -7.4473 -2.1890 32 1 0.1301 -7.2575 0.7576 33 1 2.6823 -3.6860 -0.7590 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241096693.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:14 Heat of formation + Delta-G solvation = -215.451724 kcal Electronic energy + Delta-G solvation = -26662.848965 eV Core-core repulsion = 21873.342788 eV Total energy + Delta-G solvation = -4789.506177 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -51.34614 -50.16540 -49.59445 -48.78563 -48.76062 -40.71312 -38.87006 -35.74842 -33.55253 -32.94898 -31.48161 -29.54243 -27.67597 -26.94421 -24.61572 -23.87163 -22.39599 -22.06054 -19.97355 -19.65019 -19.54957 -19.03664 -18.37935 -17.72424 -17.44722 -16.85736 -16.73555 -16.49234 -16.33819 -16.26351 -15.73872 -15.61969 -15.59381 -15.19252 -15.14796 -14.91999 -14.84171 -14.63076 -14.49894 -14.02203 -13.94691 -13.80501 -13.43358 -13.15411 -12.96491 -12.70644 -12.60192 -12.22833 -12.13797 -11.83798 -11.53094 -11.12085 -10.53626 -10.32371 -9.43503 -8.88798 -8.69110 -6.46423 -0.50781 -0.16293 0.76804 0.97641 1.42103 1.46271 1.49106 1.57102 2.18730 2.27824 2.49460 2.72383 2.75877 2.96023 3.24503 3.47892 3.57473 3.59673 3.87208 4.00028 4.12937 4.33860 4.41522 4.62748 4.74237 4.76548 4.89076 4.96460 5.02388 5.19261 5.30002 5.50467 5.63719 5.70300 5.82830 5.93191 6.20220 6.53980 6.81497 6.84069 8.25500 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.020113 B = 0.003166 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.785759 B = 8841.943770 C = 9984.631298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.035 3.965 3 Si 0.983 3.017 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.253 1.253 7 C -0.482 4.482 8 H 0.095 0.905 9 C 0.103 3.897 10 C -0.222 4.222 11 C 0.095 3.905 12 F -0.167 7.167 13 C -0.265 4.265 14 C -0.007 4.007 15 C -0.043 4.043 16 C -0.047 4.047 17 C -0.134 4.134 18 C 0.131 3.869 19 F -0.130 7.130 20 C -0.226 4.226 21 C 0.516 3.484 22 F -0.174 7.174 23 F -0.176 7.176 24 F -0.175 7.175 25 C -0.047 4.047 26 C -0.210 4.210 27 H 0.290 0.710 28 H 0.108 0.892 29 H 0.126 0.874 30 H 0.165 0.835 31 H 0.183 0.817 32 H 0.150 0.850 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.868 -11.672 -3.048 13.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.181 4.181 3 Si 0.804 3.196 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.177 1.177 7 C -0.510 4.510 8 H 0.113 0.887 9 C 0.100 3.900 10 C -0.243 4.243 11 C 0.076 3.924 12 F -0.146 7.146 13 C -0.285 4.285 14 C -0.008 4.008 15 C -0.043 4.043 16 C -0.065 4.065 17 C -0.152 4.152 18 C 0.111 3.889 19 F -0.108 7.108 20 C -0.229 4.229 21 C 0.462 3.538 22 F -0.155 7.155 23 F -0.157 7.157 24 F -0.157 7.157 25 C -0.064 4.064 26 C -0.229 4.229 27 H 0.101 0.899 28 H 0.126 0.874 29 H 0.144 0.856 30 H 0.183 0.817 31 H 0.200 0.800 32 H 0.167 0.833 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.608 -11.615 -3.039 13.251 hybrid contribution -0.639 0.431 0.413 0.875 sum 4.969 -11.184 -2.626 12.516 Atomic orbital electron populations 1.69873 1.09350 1.31021 1.34312 1.26849 0.95365 1.04954 0.90975 0.85173 0.79190 0.75611 0.79671 1.18384 1.19827 1.17682 1.19939 0.98751 0.91552 1.40803 0.88654 1.17623 0.90362 0.93737 0.88269 1.21329 1.02334 0.95735 1.04893 1.17752 0.85518 0.95558 0.93609 1.91334 1.53712 1.97610 1.71902 1.20562 1.02992 0.95321 1.09587 1.18134 0.94544 0.91542 0.96537 1.18898 0.96030 0.91477 0.97908 1.21661 0.93378 0.99039 0.92408 1.21379 1.02246 0.89108 1.02456 1.17479 0.93473 0.82188 0.95726 1.91546 1.88363 1.43898 1.86989 1.19933 1.01134 0.93625 1.08162 1.18027 0.77011 0.83987 0.74824 1.93183 1.56700 1.92942 1.72658 1.93221 1.89256 1.83281 1.49975 1.93220 1.68240 1.73713 1.80502 1.21032 0.99140 0.89353 0.96923 1.21392 1.04364 0.90985 1.06205 0.89892 0.87391 0.85609 0.81730 0.79981 0.83286 0.85041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.66 10.97 21.82 0.24 -40.42 16 2 C 0.03 1.61 5.14 85.25 0.44 2.05 16 3 Si 0.98 34.78 29.59 68.60 2.03 36.81 16 4 H -0.26 -8.77 7.11 99.48 0.71 -8.06 16 5 H -0.27 -9.53 7.11 99.48 0.71 -8.82 16 6 H -0.25 -8.66 7.11 99.48 0.71 -7.95 16 7 C -0.48 -23.03 9.05 23.46 0.21 -22.82 16 8 H 0.10 4.18 7.90 -2.91 -0.02 4.16 16 9 C 0.10 4.99 5.56 -21.32 -0.12 4.87 16 10 C -0.22 -11.32 8.66 22.81 0.20 -11.12 16 11 C 0.09 4.45 7.28 22.29 0.16 4.62 16 12 F -0.17 -7.68 17.26 44.97 0.78 -6.91 16 13 C -0.26 -10.89 9.41 22.71 0.21 -10.68 16 14 C -0.01 -0.28 5.87 -20.10 -0.12 -0.39 16 15 C -0.04 -1.28 5.88 -20.04 -0.12 -1.40 16 16 C -0.05 -1.11 9.42 22.47 0.21 -0.90 16 17 C -0.13 -2.63 10.01 22.28 0.22 -2.41 16 18 C 0.13 3.08 7.13 22.42 0.16 3.24 16 19 F -0.13 -3.07 16.44 44.97 0.74 -2.33 16 20 C -0.23 -5.86 5.37 -19.85 -0.11 -5.96 16 21 C 0.52 13.24 3.02 71.24 0.22 13.45 16 22 F -0.17 -4.50 15.97 44.97 0.72 -3.78 16 23 F -0.18 -4.57 17.05 44.97 0.77 -3.81 16 24 F -0.18 -4.52 17.05 44.97 0.77 -3.75 16 25 C -0.05 -1.30 8.80 22.47 0.20 -1.10 16 26 C -0.21 -8.64 9.17 22.96 0.21 -8.42 16 27 H 0.29 13.09 8.30 -92.71 -0.77 12.32 16 28 H 0.11 5.87 6.18 -2.91 -0.02 5.86 16 29 H 0.13 4.54 6.18 -2.91 -0.02 4.52 16 30 H 0.17 3.35 6.19 -2.91 -0.02 3.33 16 31 H 0.18 2.28 8.06 -2.91 -0.02 2.26 16 32 H 0.15 4.10 5.28 -2.91 -0.02 4.08 16 33 H 0.13 4.57 6.19 -2.91 -0.02 4.55 16 Total: -1.00 -54.14 309.69 9.24 -44.91 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 1.22 Total: 16.24 kcal Atomic # 6 Polarization: -38.95 SS G_CDS: 1.98 Total: -36.97 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: 0.24 Total: -40.42 kcal Atomic # 9 Polarization: -24.34 SS G_CDS: 3.77 Total: -20.57 kcal Atomic # 14 Polarization: 34.78 SS G_CDS: 2.03 Total: 36.81 kcal Total: -54.14 9.24 -44.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241096693.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.543 kcal (2) G-P(sol) polarization free energy of solvation -54.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds