Wall clock time and date at job start Tue Mar 31 2020 15:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30855 * 1 3 3 Si 1.86799 * 120.00212 * 2 1 4 4 H 1.48498 * 109.47468 * 270.00246 * 3 2 1 5 5 H 1.48505 * 109.46790 * 30.00266 * 3 2 1 6 6 H 1.48505 * 109.47316 * 150.00056 * 3 2 1 7 7 C 1.39924 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00080 * 197.64053 * 7 2 1 9 9 C 1.41317 * 119.99628 * 17.64246 * 7 2 1 10 10 C 1.40539 * 120.21156 * 24.78279 * 9 7 2 11 11 C 1.38665 * 119.65848 * 180.27342 * 10 9 7 12 12 C 1.48382 * 119.96577 * 179.70587 * 11 10 9 13 13 C 1.39366 * 120.09895 * 359.72383 * 12 11 10 14 14 C 1.37954 * 119.90621 * 179.97438 * 13 12 11 15 15 C 1.38564 * 120.09863 * 0.02562 * 14 13 12 16 16 F 1.35098 * 119.90911 * 179.97438 * 15 14 13 17 17 C 1.38533 * 120.18903 * 0.02562 * 15 14 13 18 18 C 1.50704 * 119.95166 * 179.97438 * 17 15 14 19 19 F 1.39893 * 109.46970 * 179.97438 * 18 17 15 20 20 F 1.39905 * 109.46780 * 299.99943 * 18 17 15 21 21 F 1.39902 * 109.47206 * 59.99689 * 18 17 15 22 22 C 1.37993 * 120.09789 * 359.69293 * 17 15 14 23 23 C 1.39825 * 120.06671 * 359.43045 * 11 10 9 24 24 C 1.38232 * 120.42410 * 0.27545 * 23 11 10 25 25 C 1.38064 * 120.34490 * 0.02562 * 24 23 11 26 26 F 1.35101 * 120.03948 * 180.02562 * 25 24 23 27 27 H 0.96996 * 120.00003 * 359.97438 * 1 2 3 28 28 H 1.08005 * 120.16829 * 359.97438 * 10 9 7 29 29 H 1.08002 * 120.04499 * 359.95762 * 13 12 11 30 30 H 1.08000 * 119.94957 * 179.97438 * 14 13 12 31 31 H 1.07997 * 120.05249 * 180.29976 * 22 17 15 32 32 H 1.08008 * 119.78460 * 180.25563 * 23 11 10 33 33 H 1.08001 * 119.82832 * 180.02562 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.4901 2.0465 -1.4000 5 1 1.4400 2.6526 0.7001 6 1 3.5402 1.4401 0.7000 7 6 2.0082 -1.2118 -0.0005 8 1 3.0500 -1.2339 0.2829 9 6 1.3514 -2.4066 -0.3720 10 6 0.2239 -2.3628 -1.2098 11 6 -0.4152 -3.5418 -1.5625 12 6 -1.6101 -3.5029 -2.4414 13 6 -2.0947 -2.2825 -2.9085 14 6 -3.2056 -2.2510 -3.7259 15 6 -3.8398 -3.4303 -4.0822 16 9 -4.9277 -3.3950 -4.8824 17 6 -3.3621 -4.6455 -3.6193 18 6 -4.0564 -5.9249 -4.0097 19 9 -3.3959 -7.0109 -3.4255 20 9 -5.3823 -5.8905 -3.5645 21 9 -4.0353 -6.0608 -5.4019 22 6 -2.2481 -4.6868 -2.8060 23 6 0.0687 -4.7677 -1.0955 24 6 1.1811 -4.8149 -0.2762 25 6 1.8270 -3.6512 0.0907 26 9 2.9140 -3.7045 0.8913 27 1 -0.4850 0.8400 0.0004 28 1 -0.1458 -1.4152 -1.5732 29 1 -1.6014 -1.3628 -2.6307 30 1 -3.5820 -1.3057 -4.0879 31 1 -1.8735 -5.6349 -2.4496 32 1 -0.4302 -5.6835 -1.3764 33 1 1.5468 -5.7671 0.0787 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241097622.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:05 Heat of formation + Delta-G solvation = -206.760310 kcal Electronic energy + Delta-G solvation = -26913.594926 eV Core-core repulsion = 22124.465637 eV Total energy + Delta-G solvation = -4789.129289 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.21413 -49.00741 -47.65889 -47.62447 -47.41206 -39.39465 -37.25122 -34.08296 -32.35668 -31.57947 -29.98620 -27.96243 -26.19056 -25.42080 -23.10384 -22.59121 -21.14857 -20.32101 -18.54646 -18.51676 -18.38218 -17.50454 -17.15899 -16.30741 -16.13160 -15.70527 -15.29555 -15.06575 -14.61869 -14.48654 -14.45654 -14.18197 -14.13045 -14.06448 -13.79118 -13.74554 -13.56280 -13.23275 -12.97964 -12.68837 -12.51378 -12.10481 -12.03249 -11.80898 -11.40749 -11.32863 -11.06402 -11.02221 -10.63235 -10.20013 -9.69503 -9.51162 -9.33298 -8.93467 -7.84636 -7.25614 -7.00716 -4.64130 0.76761 1.04412 2.42028 2.54725 2.60553 2.94333 2.98179 2.98569 3.58217 3.63739 3.74672 3.90588 4.14293 4.33167 4.41729 4.72214 4.99627 5.18121 5.24857 5.26578 5.56495 5.70703 5.84606 5.92481 5.94640 6.16295 6.26291 6.37485 6.63833 6.75923 6.88291 6.96113 7.21250 7.31666 7.59694 7.67920 7.82466 8.25730 8.49204 8.56207 9.88575 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.016705 B = 0.003638 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.732856 B = 7694.078791 C = 9123.040374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.077 3.923 3 Si 0.914 3.086 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.449 4.449 8 H 0.086 0.914 9 C 0.083 3.917 10 C -0.120 4.120 11 C -0.061 4.061 12 C -0.014 4.014 13 C -0.056 4.056 14 C -0.149 4.149 15 C 0.124 3.876 16 F -0.133 7.133 17 C -0.220 4.220 18 C 0.514 3.486 19 F -0.174 7.174 20 F -0.176 7.176 21 F -0.176 7.176 22 C -0.053 4.053 23 C -0.203 4.203 24 C -0.120 4.120 25 C -0.019 4.019 26 F -0.160 7.160 27 H 0.286 0.714 28 H 0.134 0.866 29 H 0.151 0.849 30 H 0.144 0.856 31 H 0.149 0.851 32 H 0.103 0.897 33 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.721 -3.613 -6.800 10.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.142 4.142 3 Si 0.738 3.262 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.478 4.478 8 H 0.104 0.896 9 C 0.079 3.921 10 C -0.139 4.139 11 C -0.061 4.061 12 C -0.014 4.014 13 C -0.074 4.074 14 C -0.167 4.167 15 C 0.104 3.896 16 F -0.111 7.111 17 C -0.222 4.222 18 C 0.460 3.540 19 F -0.155 7.155 20 F -0.157 7.157 21 F -0.157 7.157 22 C -0.071 4.071 23 C -0.222 4.222 24 C -0.139 4.139 25 C -0.039 4.039 26 F -0.139 7.139 27 H 0.097 0.903 28 H 0.151 0.849 29 H 0.169 0.831 30 H 0.162 0.838 31 H 0.167 0.833 32 H 0.121 0.879 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.953 -3.481 -6.791 10.323 hybrid contribution 0.120 0.469 0.032 0.485 sum -6.833 -3.012 -6.759 10.072 Atomic orbital electron populations 1.69785 1.07623 1.29895 1.34056 1.25930 0.94825 1.01624 0.91831 0.86194 0.80617 0.79815 0.79610 1.18953 1.20030 1.18335 1.19569 0.98533 0.90783 1.38878 0.89600 1.17536 0.92500 0.91104 0.90924 1.21315 0.97454 0.96335 0.98845 1.18326 0.94286 0.94527 0.99006 1.19073 0.95040 0.91668 0.95619 1.21562 0.93610 0.99231 0.93025 1.21069 0.97591 0.96800 1.01278 1.17250 0.85783 0.93383 0.93174 1.91523 1.51501 1.97288 1.70830 1.19885 1.02442 0.91027 1.08849 1.18071 0.76875 0.84242 0.74800 1.93170 1.80664 1.57528 1.84162 1.93219 1.36634 1.96695 1.89141 1.93216 1.96316 1.96359 1.29838 1.21036 0.91835 1.00261 0.93933 1.20209 1.00115 0.95637 1.06227 1.20431 0.97140 0.95954 1.00355 1.17969 0.90475 0.94758 1.00716 1.91290 1.53093 1.97294 1.72269 0.90334 0.84853 0.83126 0.83792 0.83338 0.87878 0.87603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -17.98 10.96 55.55 0.61 -17.37 16 2 C 0.08 1.74 5.14 -17.34 -0.09 1.65 16 3 Si 0.91 17.11 29.59 -169.99 -5.03 12.08 16 4 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 5 H -0.28 -5.04 7.11 56.52 0.40 -4.64 16 6 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 7 C -0.45 -11.08 8.78 -37.78 -0.33 -11.41 16 8 H 0.09 2.12 7.73 -52.49 -0.41 1.71 16 9 C 0.08 2.02 5.57 -106.80 -0.60 1.43 16 10 C -0.12 -2.69 8.06 -38.56 -0.31 -3.01 16 11 C -0.06 -1.22 5.87 -104.97 -0.62 -1.84 16 12 C -0.01 -0.23 5.88 -104.89 -0.62 -0.85 16 13 C -0.06 -0.87 9.42 -39.27 -0.37 -1.24 16 14 C -0.15 -2.00 10.01 -39.56 -0.40 -2.39 16 15 C 0.12 1.78 7.13 -39.35 -0.28 1.50 16 16 F -0.13 -1.90 16.44 2.25 0.04 -1.87 16 17 C -0.22 -3.23 5.37 -104.60 -0.56 -3.79 16 18 C 0.51 7.22 3.02 36.01 0.11 7.32 16 19 F -0.17 -2.36 15.97 2.25 0.04 -2.33 16 20 F -0.18 -2.50 17.05 2.25 0.04 -2.46 16 21 F -0.18 -2.48 17.05 2.25 0.04 -2.45 16 22 C -0.05 -0.81 8.80 -39.26 -0.35 -1.15 16 23 C -0.20 -3.94 9.43 -38.99 -0.37 -4.31 16 24 C -0.12 -2.49 9.99 -39.65 -0.40 -2.88 16 25 C -0.02 -0.45 7.31 -38.58 -0.28 -0.73 16 26 F -0.16 -3.82 16.70 2.25 0.04 -3.78 16 27 H 0.29 5.86 8.30 -40.82 -0.34 5.53 16 28 H 0.13 2.94 4.29 -52.48 -0.23 2.71 16 29 H 0.15 2.31 6.19 -52.49 -0.32 1.99 16 30 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 31 H 0.15 2.10 5.28 -52.49 -0.28 1.83 16 32 H 0.10 1.71 6.18 -52.48 -0.32 1.39 16 33 H 0.11 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 308.94 15.07 4.66 4.66 Total: -1.00 -24.49 308.94 -6.57 -31.05 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -1.54 Total: 4.16 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: -5.45 Total: -21.69 kcal Atomic # 7 Polarization: -17.98 SS G_CDS: 0.61 Total: -17.37 kcal Atomic # 9 Polarization: -13.07 SS G_CDS: 0.19 Total: -12.88 kcal Atomic # 14 Polarization: 17.11 SS G_CDS: -5.03 Total: 12.08 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -24.49 -6.57 -31.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241097622.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.705 kcal (2) G-P(sol) polarization free energy of solvation -24.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds