Wall clock time and date at job start Tue Mar 31 2020 15:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30855 * 1 3 3 Si 1.86799 * 120.00212 * 2 1 4 4 H 1.48498 * 109.47468 * 270.00246 * 3 2 1 5 5 H 1.48505 * 109.46790 * 30.00266 * 3 2 1 6 6 H 1.48505 * 109.47316 * 150.00056 * 3 2 1 7 7 C 1.39924 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00080 * 197.64053 * 7 2 1 9 9 C 1.41317 * 119.99628 * 17.64246 * 7 2 1 10 10 C 1.40539 * 120.21156 * 24.78279 * 9 7 2 11 11 C 1.38665 * 119.65848 * 180.27342 * 10 9 7 12 12 C 1.48382 * 119.96577 * 179.70587 * 11 10 9 13 13 C 1.39366 * 120.09895 * 359.72383 * 12 11 10 14 14 C 1.37954 * 119.90621 * 179.97438 * 13 12 11 15 15 C 1.38564 * 120.09863 * 0.02562 * 14 13 12 16 16 F 1.35098 * 119.90911 * 179.97438 * 15 14 13 17 17 C 1.38533 * 120.18903 * 0.02562 * 15 14 13 18 18 C 1.50704 * 119.95166 * 179.97438 * 17 15 14 19 19 F 1.39893 * 109.46970 * 179.97438 * 18 17 15 20 20 F 1.39905 * 109.46780 * 299.99943 * 18 17 15 21 21 F 1.39902 * 109.47206 * 59.99689 * 18 17 15 22 22 C 1.37993 * 120.09789 * 359.69293 * 17 15 14 23 23 C 1.39825 * 120.06671 * 359.43045 * 11 10 9 24 24 C 1.38232 * 120.42410 * 0.27545 * 23 11 10 25 25 C 1.38064 * 120.34490 * 0.02562 * 24 23 11 26 26 F 1.35101 * 120.03948 * 180.02562 * 25 24 23 27 27 H 0.96996 * 120.00003 * 359.97438 * 1 2 3 28 28 H 1.08005 * 120.16829 * 359.97438 * 10 9 7 29 29 H 1.08002 * 120.04499 * 359.95762 * 13 12 11 30 30 H 1.08000 * 119.94957 * 179.97438 * 14 13 12 31 31 H 1.07997 * 120.05249 * 180.29976 * 22 17 15 32 32 H 1.08008 * 119.78460 * 180.25563 * 23 11 10 33 33 H 1.08001 * 119.82832 * 180.02562 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.4901 2.0465 -1.4000 5 1 1.4400 2.6526 0.7001 6 1 3.5402 1.4401 0.7000 7 6 2.0082 -1.2118 -0.0005 8 1 3.0500 -1.2339 0.2829 9 6 1.3514 -2.4066 -0.3720 10 6 0.2239 -2.3628 -1.2098 11 6 -0.4152 -3.5418 -1.5625 12 6 -1.6101 -3.5029 -2.4414 13 6 -2.0947 -2.2825 -2.9085 14 6 -3.2056 -2.2510 -3.7259 15 6 -3.8398 -3.4303 -4.0822 16 9 -4.9277 -3.3950 -4.8824 17 6 -3.3621 -4.6455 -3.6193 18 6 -4.0564 -5.9249 -4.0097 19 9 -3.3959 -7.0109 -3.4255 20 9 -5.3823 -5.8905 -3.5645 21 9 -4.0353 -6.0608 -5.4019 22 6 -2.2481 -4.6868 -2.8060 23 6 0.0687 -4.7677 -1.0955 24 6 1.1811 -4.8149 -0.2762 25 6 1.8270 -3.6512 0.0907 26 9 2.9140 -3.7045 0.8913 27 1 -0.4850 0.8400 0.0004 28 1 -0.1458 -1.4152 -1.5732 29 1 -1.6014 -1.3628 -2.6307 30 1 -3.5820 -1.3057 -4.0879 31 1 -1.8735 -5.6349 -2.4496 32 1 -0.4302 -5.6835 -1.3764 33 1 1.5468 -5.7671 0.0787 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241097622.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:04 Heat of formation + Delta-G solvation = -214.871306 kcal Electronic energy + Delta-G solvation = -26913.946645 eV Core-core repulsion = 22124.465637 eV Total energy + Delta-G solvation = -4789.481008 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.31993 -50.15766 -49.22080 -48.75271 -48.73585 -40.69741 -38.80245 -35.75615 -33.63002 -32.92062 -31.64674 -29.43264 -27.56167 -26.91303 -24.39200 -23.98809 -22.66141 -21.79369 -19.83221 -19.62185 -19.51144 -19.01514 -18.50125 -17.91457 -17.48609 -16.85296 -16.83833 -16.56429 -16.04353 -15.97166 -15.69452 -15.59158 -15.35312 -15.16287 -15.02846 -14.89044 -14.84162 -14.51737 -14.45581 -13.99404 -13.83767 -13.70317 -13.51413 -13.38526 -12.96265 -12.79794 -12.55261 -12.39461 -12.12274 -11.84179 -11.32539 -11.14538 -10.52665 -10.29797 -9.55288 -8.86088 -8.64072 -6.44027 -0.49535 -0.14950 0.85416 0.91796 1.40114 1.48132 1.48914 1.51634 2.19418 2.25339 2.51348 2.72108 2.77572 2.98259 3.26953 3.53504 3.59345 3.67184 3.96039 4.03441 4.10325 4.30700 4.45526 4.53457 4.71202 4.84363 4.86888 5.01107 5.06687 5.19532 5.39006 5.45511 5.62941 5.68026 5.95367 5.97160 6.13762 6.49577 6.74633 6.82443 8.23177 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.016705 B = 0.003638 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.732856 B = 7694.078791 C = 9123.040374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.046 3.954 3 Si 0.979 3.021 4 H -0.256 1.256 5 H -0.263 1.263 6 H -0.268 1.268 7 C -0.492 4.492 8 H 0.069 0.931 9 C 0.055 3.945 10 C -0.138 4.138 11 C -0.055 4.055 12 C -0.038 4.038 13 C -0.055 4.055 14 C -0.137 4.137 15 C 0.128 3.872 16 F -0.130 7.130 17 C -0.224 4.224 18 C 0.518 3.482 19 F -0.170 7.170 20 F -0.176 7.176 21 F -0.176 7.176 22 C -0.043 4.043 23 C -0.197 4.197 24 C -0.119 4.119 25 C -0.058 4.058 26 F -0.171 7.171 27 H 0.296 0.704 28 H 0.132 0.868 29 H 0.147 0.853 30 H 0.175 0.825 31 H 0.161 0.839 32 H 0.139 0.861 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.355 -3.739 -8.050 12.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.171 4.171 3 Si 0.800 3.200 4 H -0.180 1.180 5 H -0.188 1.188 6 H -0.192 1.192 7 C -0.520 4.520 8 H 0.087 0.913 9 C 0.052 3.948 10 C -0.158 4.158 11 C -0.055 4.055 12 C -0.038 4.038 13 C -0.073 4.073 14 C -0.155 4.155 15 C 0.109 3.891 16 F -0.108 7.108 17 C -0.226 4.226 18 C 0.464 3.536 19 F -0.151 7.151 20 F -0.158 7.158 21 F -0.157 7.157 22 C -0.061 4.061 23 C -0.216 4.216 24 C -0.137 4.137 25 C -0.078 4.078 26 F -0.150 7.150 27 H 0.107 0.893 28 H 0.149 0.851 29 H 0.164 0.836 30 H 0.193 0.807 31 H 0.178 0.822 32 H 0.156 0.844 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.601 -3.626 -8.047 12.324 hybrid contribution 0.471 0.384 0.329 0.691 sum -8.130 -3.242 -7.717 11.669 Atomic orbital electron populations 1.69789 1.08473 1.31210 1.34012 1.26585 0.95589 1.03923 0.90973 0.85236 0.78917 0.75978 0.79895 1.17993 1.18753 1.19213 1.19669 0.98229 0.92445 1.41674 0.91316 1.17902 0.93623 0.91576 0.91708 1.21343 0.97617 0.97359 0.99450 1.18606 0.94670 0.93928 0.98315 1.18946 0.94934 0.93106 0.96820 1.21579 0.94068 0.98586 0.93100 1.21283 0.96348 0.97884 0.99964 1.17399 0.85552 0.93583 0.92580 1.91539 1.51341 1.97282 1.70669 1.19950 1.02344 0.91560 1.08782 1.17949 0.76773 0.84066 0.74786 1.93180 1.80569 1.57303 1.84090 1.93221 1.36700 1.96692 1.89155 1.93220 1.96309 1.96342 1.29842 1.21050 0.91595 1.00027 0.93454 1.20661 0.99309 0.96868 1.04718 1.20757 0.97016 0.96049 0.99928 1.18357 0.91356 0.95859 1.02276 1.91243 1.53675 1.97375 1.72724 0.89339 0.85068 0.83562 0.80749 0.82184 0.84372 0.85057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -37.44 10.96 21.82 0.24 -37.20 16 2 C 0.05 2.15 5.14 85.25 0.44 2.58 16 3 Si 0.98 35.48 29.59 68.60 2.03 37.51 16 4 H -0.26 -8.82 7.11 99.48 0.71 -8.11 16 5 H -0.26 -8.94 7.11 99.48 0.71 -8.24 16 6 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 7 C -0.49 -25.46 8.78 23.44 0.21 -25.26 16 8 H 0.07 3.63 7.73 -2.91 -0.02 3.61 16 9 C 0.05 2.80 5.57 -21.27 -0.12 2.68 16 10 C -0.14 -6.33 8.06 22.93 0.18 -6.15 16 11 C -0.05 -2.16 5.87 -20.09 -0.12 -2.28 16 12 C -0.04 -1.22 5.88 -20.04 -0.12 -1.34 16 13 C -0.06 -1.61 9.42 22.47 0.21 -1.39 16 14 C -0.14 -3.26 10.01 22.28 0.22 -3.04 16 15 C 0.13 3.30 7.13 22.42 0.16 3.46 16 16 F -0.13 -3.31 16.44 44.97 0.74 -2.57 16 17 C -0.22 -5.95 5.37 -19.85 -0.11 -6.05 16 18 C 0.52 13.14 3.02 71.24 0.22 13.35 16 19 F -0.17 -4.14 15.97 44.97 0.72 -3.43 16 20 F -0.18 -4.57 17.05 44.97 0.77 -3.81 16 21 F -0.18 -4.51 17.05 44.97 0.77 -3.74 16 22 C -0.04 -1.21 8.80 22.48 0.20 -1.02 16 23 C -0.20 -7.35 9.43 22.65 0.21 -7.13 16 24 C -0.12 -4.87 9.99 22.23 0.22 -4.65 16 25 C -0.06 -2.85 7.31 22.92 0.17 -2.68 16 26 F -0.17 -8.51 16.70 44.97 0.75 -7.76 16 27 H 0.30 12.11 8.30 -92.71 -0.77 11.34 16 28 H 0.13 5.93 4.29 -2.91 -0.01 5.91 16 29 H 0.15 4.38 6.19 -2.91 -0.02 4.37 16 30 H 0.18 3.08 8.06 -2.91 -0.02 3.05 16 31 H 0.16 4.01 5.28 -2.91 -0.02 3.99 16 32 H 0.14 4.13 6.18 -2.91 -0.02 4.11 16 33 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 Total: -1.00 -53.76 308.94 9.21 -44.55 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 1.22 Total: 15.36 kcal Atomic # 6 Polarization: -40.90 SS G_CDS: 1.98 Total: -38.92 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.24 Total: -37.20 kcal Atomic # 9 Polarization: -25.05 SS G_CDS: 3.74 Total: -21.30 kcal Atomic # 14 Polarization: 35.48 SS G_CDS: 2.03 Total: 37.51 kcal Total: -53.76 9.21 -44.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241097622.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.317 kcal (2) G-P(sol) polarization free energy of solvation -53.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds