Wall clock time and date at job start Tue Mar 31 2020 15:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86802 * 119.99887 * 2 1 4 4 H 1.48500 * 109.47472 * 89.99668 * 3 2 1 5 5 H 1.48502 * 109.47028 * 209.99916 * 3 2 1 6 6 H 1.48500 * 109.47063 * 329.99483 * 3 2 1 7 7 C 1.39992 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00209 * 17.82813 * 7 2 1 9 9 C 1.40939 * 119.99692 * 197.82400 * 7 2 1 10 10 C 1.40951 * 120.13689 * 28.83505 * 9 7 2 11 11 C 1.36177 * 119.90041 * 180.02562 * 10 9 7 12 12 C 1.40045 * 120.18660 * 359.97438 * 11 10 9 13 13 C 1.47951 * 119.86578 * 180.02562 * 12 11 10 14 14 C 1.39610 * 120.15585 * 129.73021 * 13 12 11 15 15 C 1.37896 * 119.87786 * 179.74878 * 14 13 12 16 16 C 1.50701 * 119.90094 * 180.27448 * 15 14 13 17 17 F 1.39898 * 109.47558 * 180.25185 * 16 15 14 18 18 F 1.39892 * 109.47175 * 300.25442 * 16 15 14 19 19 F 1.39906 * 109.47008 * 60.25178 * 16 15 14 20 20 C 1.38447 * 120.20625 * 0.52561 * 15 14 13 21 21 C 1.38294 * 120.31641 * 359.72826 * 20 15 14 22 22 C 1.38229 * 120.11966 * 0.02562 * 21 20 15 23 23 F 1.35106 * 120.10197 * 179.97438 * 22 21 20 24 24 C 1.39806 * 120.27394 * 0.02562 * 12 11 10 25 25 C 1.36564 * 120.09094 * 359.70781 * 24 12 11 26 26 F 1.35097 * 120.09379 * 180.29671 * 25 24 12 27 27 H 0.97001 * 120.00250 * 175.44772 * 1 2 3 28 28 H 1.07992 * 120.04890 * 0.02562 * 10 9 7 29 29 H 1.08003 * 119.90956 * 180.02562 * 11 10 9 30 30 H 1.08000 * 120.05786 * 359.97438 * 14 13 12 31 31 H 1.08000 * 119.84334 * 179.70329 * 20 15 14 32 32 H 1.08002 * 119.93921 * 179.97438 * 21 20 15 33 33 H 1.07990 * 119.95551 * 179.97438 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4896 2.0466 1.4000 5 1 3.5398 1.4402 -0.7000 6 1 1.4397 2.6526 -0.7001 7 6 2.0082 -1.2124 0.0005 8 1 1.5071 -2.1253 -0.2854 9 6 3.3668 -1.2414 0.3742 10 6 3.8709 -0.2906 1.2844 11 6 5.1846 -0.3228 1.6417 12 6 6.0359 -1.2982 1.1077 13 6 7.4618 -1.3270 1.5012 14 6 8.0453 -2.5182 1.9366 15 6 9.3762 -2.5396 2.2970 16 6 10.0081 -3.8266 2.7612 17 9 11.3526 -3.5996 3.0744 18 9 9.3370 -4.2927 3.8967 19 9 9.9214 -4.7824 1.7432 20 6 10.1323 -1.3814 2.2388 21 6 9.5614 -0.1956 1.8138 22 6 8.2298 -0.1601 1.4445 23 9 7.6723 0.9986 1.0299 24 6 5.5439 -2.2449 0.2042 25 6 4.2272 -2.2264 -0.1577 26 9 3.7504 -3.1449 -1.0261 27 1 -0.4850 -0.8374 -0.0667 28 1 3.2163 0.4622 1.6979 29 1 5.5709 0.4054 2.3395 30 1 7.4564 -3.4221 1.9875 31 1 11.1729 -1.4038 2.5271 32 1 10.1568 0.7044 1.7711 33 1 6.2050 -2.9945 -0.2047 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241098301.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:52 Heat of formation + Delta-G solvation = -210.276571 kcal Electronic energy + Delta-G solvation = -26869.421168 eV Core-core repulsion = 22080.139403 eV Total energy + Delta-G solvation = -4789.281765 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.24689 -48.76909 -47.78135 -47.68570 -47.56733 -39.32109 -37.66951 -34.31692 -32.27685 -31.61234 -29.79569 -29.40842 -25.86242 -25.33681 -23.07604 -22.00428 -21.68052 -20.49724 -18.61786 -18.55929 -18.48122 -18.30676 -17.45969 -16.37734 -16.13637 -15.59672 -15.22824 -14.83511 -14.60140 -14.55350 -14.45852 -14.38917 -14.17553 -14.15038 -13.92398 -13.86457 -13.62271 -13.38818 -13.27906 -13.11014 -12.76854 -12.56731 -12.07770 -11.83150 -11.48332 -11.27160 -11.03140 -10.85906 -10.46245 -10.06723 -9.74356 -9.35606 -9.15838 -8.93521 -7.99133 -7.85626 -7.50171 -4.83381 0.73317 1.01211 2.20442 2.35981 2.57080 3.02913 3.18443 3.31834 3.40504 3.61768 3.79515 3.92695 4.14472 4.26902 4.34646 4.66944 4.76057 4.97821 5.04493 5.19878 5.55274 5.62958 5.65466 5.77978 5.89290 5.99708 6.07248 6.14910 6.35542 6.58466 6.66319 6.98653 7.11553 7.20897 7.35308 7.38888 7.58317 8.03587 8.16581 8.36853 9.66058 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.019436 B = 0.003593 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.297859 B = 7791.202637 C = 8726.384350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.041 3.959 3 Si 1.072 2.928 4 H -0.271 1.271 5 H -0.258 1.258 6 H -0.284 1.284 7 C -0.481 4.481 8 H 0.086 0.914 9 C 0.079 3.921 10 C -0.235 4.235 11 C -0.040 4.040 12 C -0.203 4.203 13 C -0.018 4.018 14 C -0.049 4.049 15 C -0.193 4.193 16 C 0.512 3.488 17 F -0.180 7.180 18 F -0.176 7.176 19 F -0.177 7.177 20 C -0.070 4.070 21 C -0.152 4.152 22 C 0.122 3.878 23 F -0.125 7.125 24 C -0.078 4.078 25 C -0.020 4.020 26 F -0.158 7.158 27 H 0.292 0.708 28 H 0.117 0.883 29 H 0.103 0.897 30 H 0.141 0.859 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.614 -1.028 4.667 17.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.181 4.181 3 Si 0.897 3.103 4 H -0.198 1.198 5 H -0.182 1.182 6 H -0.211 1.211 7 C -0.507 4.507 8 H 0.104 0.896 9 C 0.075 3.925 10 C -0.253 4.253 11 C -0.058 4.058 12 C -0.204 4.204 13 C -0.019 4.019 14 C -0.068 4.068 15 C -0.195 4.195 16 C 0.458 3.542 17 F -0.161 7.161 18 F -0.158 7.158 19 F -0.158 7.158 20 C -0.088 4.088 21 C -0.171 4.171 22 C 0.103 3.897 23 F -0.103 7.103 24 C -0.097 4.097 25 C -0.039 4.039 26 F -0.137 7.137 27 H 0.104 0.896 28 H 0.135 0.865 29 H 0.121 0.879 30 H 0.158 0.842 31 H 0.159 0.841 32 H 0.160 0.840 33 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 16.227 0.528 4.660 16.891 hybrid contribution -0.056 -2.064 -0.160 2.071 sum 16.171 -1.536 4.501 16.855 Atomic orbital electron populations 1.70525 1.08099 1.33658 1.28682 1.27530 0.95612 1.04771 0.90218 0.83597 0.75818 0.72534 0.78348 1.19751 1.18215 1.21144 1.20785 0.94867 0.97385 1.37688 0.89636 1.17836 0.93213 0.90845 0.90650 1.20621 0.95892 1.04668 1.04163 1.20372 0.93207 0.95283 0.96982 1.17423 0.90169 1.03714 1.09140 1.18819 0.94222 0.90950 0.97941 1.20939 0.92363 0.98592 0.94858 1.19855 0.96281 0.92924 1.10409 1.18255 0.75944 0.84823 0.75224 1.93146 1.35224 1.94615 1.93145 1.93222 1.80191 1.90060 1.52306 1.93224 1.95955 1.66773 1.59852 1.20695 1.00035 0.90450 0.97620 1.20979 0.93572 0.99415 1.03111 1.18052 0.91270 0.82300 0.98104 1.91537 1.85564 1.45991 1.87203 1.20277 0.93658 0.98042 0.97725 1.17293 0.92070 0.95813 0.98763 1.91318 1.89179 1.65004 1.68170 0.89641 0.86528 0.87926 0.84156 0.84092 0.83973 0.87313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.89 13.65 55.55 0.76 -19.13 16 2 C 0.04 1.02 5.41 -17.33 -0.09 0.93 16 3 Si 1.07 22.74 24.90 -169.99 -4.23 18.51 16 4 H -0.27 -5.36 6.43 56.52 0.36 -4.99 16 5 H -0.26 -5.50 7.04 56.52 0.40 -5.10 16 6 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.48 -12.38 9.12 -37.90 -0.35 -12.72 16 8 H 0.09 2.31 7.94 -52.49 -0.42 1.89 16 9 C 0.08 1.93 5.14 -106.73 -0.55 1.38 16 10 C -0.23 -5.26 7.20 -39.30 -0.28 -5.54 16 11 C -0.04 -0.81 8.79 -39.65 -0.35 -1.16 16 12 C -0.20 -3.93 5.34 -104.65 -0.56 -4.49 16 13 C -0.02 -0.30 5.47 -104.82 -0.57 -0.87 16 14 C -0.05 -0.70 9.05 -39.19 -0.35 -1.05 16 15 C -0.19 -2.38 5.37 -104.67 -0.56 -2.95 16 16 C 0.51 6.03 3.31 36.01 0.12 6.15 16 17 F -0.18 -1.96 15.96 2.25 0.04 -1.93 16 18 F -0.18 -2.20 17.23 2.25 0.04 -2.16 16 19 F -0.18 -2.20 17.24 2.25 0.04 -2.16 16 20 C -0.07 -0.75 9.43 -39.48 -0.37 -1.12 16 21 C -0.15 -1.73 10.01 -39.56 -0.40 -2.13 16 22 C 0.12 1.80 7.16 -39.00 -0.28 1.52 16 23 F -0.12 -2.01 15.89 2.25 0.04 -1.97 16 24 C -0.08 -1.59 9.41 -39.60 -0.37 -1.96 16 25 C -0.02 -0.46 7.26 -39.07 -0.28 -0.74 16 26 F -0.16 -3.76 16.74 2.25 0.04 -3.72 16 27 H 0.29 7.13 8.73 -40.82 -0.36 6.78 16 28 H 0.12 2.55 4.39 -52.49 -0.23 2.32 16 29 H 0.10 1.85 7.77 -52.48 -0.41 1.44 16 30 H 0.14 1.92 8.04 -52.49 -0.42 1.50 16 31 H 0.14 1.16 7.14 -52.49 -0.37 0.79 16 32 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.11 1.97 8.03 -52.49 -0.42 1.55 16 LS Contribution 309.74 15.07 4.67 4.67 Total: -1.00 -25.37 309.74 -5.76 -31.13 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -1.89 Total: 1.53 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: -5.25 Total: -24.77 kcal Atomic # 7 Polarization: -19.89 SS G_CDS: 0.76 Total: -19.13 kcal Atomic # 9 Polarization: -12.13 SS G_CDS: 0.19 Total: -11.94 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.23 Total: 18.51 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -25.37 -5.76 -31.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241098301.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.147 kcal (2) G-P(sol) polarization free energy of solvation -25.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds