Wall clock time and date at job start Tue Mar 31 2020 15:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86802 * 119.99887 * 2 1 4 4 H 1.48500 * 109.47472 * 89.99668 * 3 2 1 5 5 H 1.48502 * 109.47028 * 209.99916 * 3 2 1 6 6 H 1.48500 * 109.47063 * 329.99483 * 3 2 1 7 7 C 1.39992 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00209 * 17.82813 * 7 2 1 9 9 C 1.40939 * 119.99692 * 197.82400 * 7 2 1 10 10 C 1.40951 * 120.13689 * 28.83505 * 9 7 2 11 11 C 1.36177 * 119.90041 * 180.02562 * 10 9 7 12 12 C 1.40045 * 120.18660 * 359.97438 * 11 10 9 13 13 C 1.47951 * 119.86578 * 180.02562 * 12 11 10 14 14 C 1.39610 * 120.15585 * 129.73021 * 13 12 11 15 15 C 1.37896 * 119.87786 * 179.74878 * 14 13 12 16 16 C 1.50701 * 119.90094 * 180.27448 * 15 14 13 17 17 F 1.39898 * 109.47558 * 180.25185 * 16 15 14 18 18 F 1.39892 * 109.47175 * 300.25442 * 16 15 14 19 19 F 1.39906 * 109.47008 * 60.25178 * 16 15 14 20 20 C 1.38447 * 120.20625 * 0.52561 * 15 14 13 21 21 C 1.38294 * 120.31641 * 359.72826 * 20 15 14 22 22 C 1.38229 * 120.11966 * 0.02562 * 21 20 15 23 23 F 1.35106 * 120.10197 * 179.97438 * 22 21 20 24 24 C 1.39806 * 120.27394 * 0.02562 * 12 11 10 25 25 C 1.36564 * 120.09094 * 359.70781 * 24 12 11 26 26 F 1.35097 * 120.09379 * 180.29671 * 25 24 12 27 27 H 0.97001 * 120.00250 * 175.44772 * 1 2 3 28 28 H 1.07992 * 120.04890 * 0.02562 * 10 9 7 29 29 H 1.08003 * 119.90956 * 180.02562 * 11 10 9 30 30 H 1.08000 * 120.05786 * 359.97438 * 14 13 12 31 31 H 1.08000 * 119.84334 * 179.70329 * 20 15 14 32 32 H 1.08002 * 119.93921 * 179.97438 * 21 20 15 33 33 H 1.07990 * 119.95551 * 179.97438 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4896 2.0466 1.4000 5 1 3.5398 1.4402 -0.7000 6 1 1.4397 2.6526 -0.7001 7 6 2.0082 -1.2124 0.0005 8 1 1.5071 -2.1253 -0.2854 9 6 3.3668 -1.2414 0.3742 10 6 3.8709 -0.2906 1.2844 11 6 5.1846 -0.3228 1.6417 12 6 6.0359 -1.2982 1.1077 13 6 7.4618 -1.3270 1.5012 14 6 8.0453 -2.5182 1.9366 15 6 9.3762 -2.5396 2.2970 16 6 10.0081 -3.8266 2.7612 17 9 11.3526 -3.5996 3.0744 18 9 9.3370 -4.2927 3.8967 19 9 9.9214 -4.7824 1.7432 20 6 10.1323 -1.3814 2.2388 21 6 9.5614 -0.1956 1.8138 22 6 8.2298 -0.1601 1.4445 23 9 7.6723 0.9986 1.0299 24 6 5.5439 -2.2449 0.2042 25 6 4.2272 -2.2264 -0.1577 26 9 3.7504 -3.1449 -1.0261 27 1 -0.4850 -0.8374 -0.0667 28 1 3.2163 0.4622 1.6979 29 1 5.5709 0.4054 2.3395 30 1 7.4564 -3.4221 1.9875 31 1 11.1729 -1.4038 2.5271 32 1 10.1568 0.7044 1.7711 33 1 6.2050 -2.9945 -0.2047 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241098301.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:52 Heat of formation + Delta-G solvation = -221.037106 kcal Electronic energy + Delta-G solvation = -26869.887780 eV Core-core repulsion = 22080.139403 eV Total energy + Delta-G solvation = -4789.748377 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.17597 -49.94672 -49.43259 -48.68677 -48.64181 -40.54090 -39.24071 -36.03956 -33.73831 -32.63547 -31.46437 -30.94640 -26.97546 -26.80447 -24.44744 -23.24325 -23.22016 -22.02332 -20.34050 -19.52459 -19.49414 -19.43723 -18.54907 -17.83409 -17.41979 -16.98945 -16.81812 -16.37471 -16.27935 -15.90846 -15.59220 -15.54392 -15.47219 -15.07406 -15.04892 -14.92336 -14.79678 -14.79539 -14.57159 -14.36003 -14.21696 -13.97051 -13.49431 -13.15303 -13.02756 -12.68271 -12.65538 -12.30506 -12.03114 -11.79315 -11.52503 -11.01939 -10.36987 -10.10897 -9.67006 -9.63325 -9.25215 -6.73124 -0.34985 -0.07993 0.57891 0.61479 1.32797 1.49996 1.61976 1.73359 2.08478 2.20702 2.46916 2.66921 2.98658 3.11406 3.22666 3.39811 3.52644 3.70084 3.84115 4.00139 4.05574 4.21532 4.28956 4.56661 4.62000 4.74504 4.80142 4.97591 4.99894 5.05431 5.19830 5.32261 5.35437 5.59964 5.66944 5.70096 5.80435 6.13274 6.38091 6.56320 7.79977 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.019436 B = 0.003593 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.297859 B = 7791.202637 C = 8726.384350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.015 3.985 3 Si 1.100 2.900 4 H -0.244 1.244 5 H -0.262 1.262 6 H -0.275 1.275 7 C -0.530 4.530 8 H 0.048 0.952 9 C 0.060 3.940 10 C -0.234 4.234 11 C -0.047 4.047 12 C -0.169 4.169 13 C -0.054 4.054 14 C -0.047 4.047 15 C -0.195 4.195 16 C 0.517 3.483 17 F -0.171 7.171 18 F -0.181 7.181 19 F -0.181 7.181 20 C -0.045 4.045 21 C -0.137 4.137 22 C 0.117 3.883 23 F -0.135 7.135 24 C -0.079 4.079 25 C -0.047 4.047 26 F -0.168 7.168 27 H 0.282 0.718 28 H 0.122 0.878 29 H 0.132 0.868 30 H 0.139 0.861 31 H 0.177 0.823 32 H 0.179 0.821 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.655 0.192 6.254 22.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.201 4.201 3 Si 0.919 3.081 4 H -0.169 1.169 5 H -0.186 1.186 6 H -0.201 1.201 7 C -0.558 4.558 8 H 0.067 0.933 9 C 0.056 3.944 10 C -0.253 4.253 11 C -0.065 4.065 12 C -0.170 4.170 13 C -0.054 4.054 14 C -0.065 4.065 15 C -0.197 4.197 16 C 0.463 3.537 17 F -0.152 7.152 18 F -0.163 7.163 19 F -0.163 7.163 20 C -0.063 4.063 21 C -0.156 4.156 22 C 0.097 3.903 23 F -0.114 7.114 24 C -0.098 4.098 25 C -0.067 4.067 26 F -0.148 7.148 27 H 0.093 0.907 28 H 0.140 0.860 29 H 0.150 0.850 30 H 0.157 0.843 31 H 0.194 0.806 32 H 0.196 0.804 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 21.276 1.730 6.262 22.245 hybrid contribution -1.085 -2.592 -0.536 2.861 sum 20.190 -0.862 5.725 21.004 Atomic orbital electron populations 1.70587 1.08532 1.32945 1.32185 1.28502 0.95719 1.06744 0.89122 0.83303 0.74784 0.70131 0.79887 1.16873 1.18637 1.20130 1.20600 0.96171 0.96754 1.42240 0.93343 1.18030 0.92910 0.92068 0.91345 1.20796 0.97028 1.04084 1.03401 1.20736 0.92367 0.96182 0.97235 1.17867 0.92101 1.01198 1.05830 1.18636 0.92638 0.92716 1.01454 1.20895 0.93281 0.97762 0.94553 1.19945 0.95675 0.93890 1.10171 1.18132 0.76219 0.84430 0.74942 1.93167 1.34469 1.94518 1.93049 1.93221 1.80381 1.90106 1.52552 1.93223 1.96005 1.66978 1.60073 1.21170 1.01324 0.89235 0.94547 1.21337 0.92123 1.00980 1.01122 1.18275 0.92513 0.81225 0.98252 1.91522 1.85942 1.46445 1.87444 1.20577 0.92644 0.98925 0.97615 1.17698 0.93356 0.96104 0.99495 1.91279 1.89523 1.65358 1.68593 0.90706 0.86041 0.85000 0.84293 0.80584 0.80393 0.84913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.07 13.65 21.84 0.30 -43.77 16 2 C 0.02 0.80 5.41 85.27 0.46 1.26 16 3 Si 1.10 46.36 24.90 68.60 1.71 48.07 16 4 H -0.24 -9.12 6.43 99.48 0.64 -8.48 16 5 H -0.26 -11.04 7.04 99.48 0.70 -10.34 16 6 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 7 C -0.53 -29.36 9.12 23.36 0.21 -29.15 16 8 H 0.05 2.91 7.94 -2.91 -0.02 2.89 16 9 C 0.06 3.04 5.14 -21.23 -0.11 2.94 16 10 C -0.23 -10.44 7.20 22.45 0.16 -10.28 16 11 C -0.05 -1.81 8.79 22.23 0.20 -1.61 16 12 C -0.17 -6.17 5.34 -19.89 -0.11 -6.28 16 13 C -0.05 -1.54 5.47 -19.99 -0.11 -1.65 16 14 C -0.05 -1.16 9.05 22.52 0.20 -0.95 16 15 C -0.20 -3.92 5.37 -19.90 -0.11 -4.03 16 16 C 0.52 10.16 3.31 71.24 0.24 10.40 16 17 F -0.17 -2.93 15.96 44.97 0.72 -2.21 16 18 F -0.18 -3.95 17.23 44.97 0.77 -3.17 16 19 F -0.18 -3.95 17.24 44.97 0.78 -3.17 16 20 C -0.04 -0.69 9.43 22.33 0.21 -0.48 16 21 C -0.14 -2.30 10.01 22.28 0.22 -2.08 16 22 C 0.12 2.92 7.16 22.65 0.16 3.08 16 23 F -0.14 -3.83 15.89 44.97 0.71 -3.12 16 24 C -0.08 -3.16 9.41 22.26 0.21 -2.95 16 25 C -0.05 -2.25 7.26 22.60 0.16 -2.09 16 26 F -0.17 -8.44 16.74 44.97 0.75 -7.69 16 27 H 0.28 15.07 8.73 -92.71 -0.81 14.27 16 28 H 0.12 5.24 4.39 -2.91 -0.01 5.23 16 29 H 0.13 4.30 7.77 -2.91 -0.02 4.27 16 30 H 0.14 3.44 8.04 -2.91 -0.02 3.42 16 31 H 0.18 1.59 7.14 -2.91 -0.02 1.57 16 32 H 0.18 1.80 8.06 -2.91 -0.02 1.78 16 33 H 0.13 4.61 8.03 -2.92 -0.02 4.58 16 Total: -1.00 -58.94 309.74 8.84 -50.10 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: 1.09 Total: 8.85 kcal Atomic # 6 Polarization: -45.89 SS G_CDS: 2.01 Total: -43.88 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: 0.30 Total: -43.77 kcal Atomic # 9 Polarization: -23.10 SS G_CDS: 3.73 Total: -19.36 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 1.71 Total: 48.07 kcal Total: -58.94 8.84 -50.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241098301.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.938 kcal (2) G-P(sol) polarization free energy of solvation -58.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds