Wall clock time and date at job start Tue Mar 31 2020 15:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30850 * 1 3 3 Si 1.86803 * 119.99708 * 2 1 4 4 H 1.48504 * 109.46968 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47185 * 299.99660 * 3 2 1 6 6 H 1.48501 * 109.47175 * 59.99992 * 3 2 1 7 7 C 1.39916 * 120.00386 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00286 * 162.86752 * 7 2 1 9 9 C 1.41322 * 119.99621 * 342.86810 * 7 2 1 10 10 C 1.40531 * 120.20621 * 334.70922 * 9 7 2 11 11 C 1.38680 * 119.65527 * 179.97438 * 10 9 7 12 12 C 1.48376 * 119.96741 * 179.97438 * 11 10 9 13 13 C 1.39331 * 120.13135 * 129.74322 * 12 11 10 14 14 C 1.38001 * 119.89635 * 179.78832 * 13 12 11 15 15 C 1.50702 * 119.90968 * 180.25178 * 14 13 12 16 16 F 1.39905 * 109.47110 * 180.23356 * 15 14 13 17 17 F 1.39892 * 109.47464 * 300.23759 * 15 14 13 18 18 F 1.39904 * 109.47041 * 60.24153 * 15 14 13 19 19 C 1.38354 * 120.17995 * 0.49399 * 14 13 12 20 20 C 1.38256 * 120.26689 * 359.73791 * 19 14 13 21 21 C 1.38284 * 120.09638 * 0.02590 * 20 19 14 22 22 F 1.35098 * 120.08877 * 179.97438 * 21 20 19 23 23 C 1.39827 * 120.06880 * 0.02562 * 11 10 9 24 24 C 1.38232 * 120.41969 * 359.97438 * 23 11 10 25 25 C 1.38069 * 120.34934 * 0.26973 * 24 23 11 26 26 F 1.35100 * 120.04361 * 179.70461 * 25 24 23 27 27 H 0.96999 * 120.00647 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.17785 * 359.95570 * 10 9 7 29 29 H 1.08003 * 120.05308 * 0.02562 * 13 12 11 30 30 H 1.07993 * 119.86865 * 179.72149 * 19 14 13 31 31 H 1.07995 * 119.95609 * 180.02562 * 20 19 14 32 32 H 1.07997 * 119.79302 * 179.97438 * 23 11 10 33 33 H 1.08007 * 119.82896 * 179.97438 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 3.7025 1.3465 -0.0006 5 1 1.8837 2.3965 -1.2125 6 1 1.8836 2.3965 1.2125 7 6 2.0082 -1.2117 0.0005 8 1 3.0522 -1.2325 -0.2750 9 6 1.3486 -2.4082 0.3616 10 6 0.2211 -2.3689 1.1995 11 6 -0.4177 -3.5500 1.5462 12 6 -1.6084 -3.5166 2.4309 13 6 -2.7720 -4.1891 2.0633 14 6 -3.8751 -4.1584 2.8918 15 6 -5.1319 -4.8904 2.4972 16 9 -6.1063 -4.7101 3.4849 17 9 -5.6027 -4.3861 1.2802 18 9 -4.8536 -6.2546 2.3603 19 6 -3.8321 -3.4534 4.0815 20 6 -2.6827 -2.7796 4.4510 21 6 -1.5692 -2.8068 3.6315 22 9 -0.4464 -2.1479 3.9925 23 6 0.0598 -4.7725 1.0637 24 6 1.1686 -4.8146 0.2393 25 6 1.8208 -3.6497 -0.1127 26 9 2.9075 -3.6986 -0.9139 27 1 -0.4851 0.8400 -0.0004 28 1 -0.1460 -1.4239 1.5719 29 1 -2.8093 -4.7367 1.1331 30 1 -4.6998 -3.4291 4.7239 31 1 -2.6545 -2.2312 5.3809 32 1 -0.4409 -5.6896 1.3368 33 1 1.5295 -5.7642 -0.1275 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241098579.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:29 Heat of formation + Delta-G solvation = -207.816256 kcal Electronic energy + Delta-G solvation = -27048.177687 eV Core-core repulsion = 22259.002609 eV Total energy + Delta-G solvation = -4789.175078 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.17389 -48.65368 -47.70964 -47.61009 -47.34663 -39.24429 -37.31403 -34.03354 -32.14004 -31.50805 -29.92889 -28.19307 -25.83828 -25.43127 -23.25187 -22.23870 -21.31000 -20.31030 -18.48610 -18.45427 -18.29811 -17.35579 -17.22043 -16.19178 -16.15164 -15.50646 -15.22970 -14.86808 -14.55371 -14.52380 -14.41529 -14.10019 -14.07861 -13.98247 -13.79052 -13.75951 -13.53582 -13.23136 -12.94715 -12.70748 -12.47610 -12.09370 -11.89194 -11.76164 -11.54487 -11.23231 -11.18658 -10.82320 -10.55226 -10.09333 -9.75044 -9.42590 -9.08120 -8.82331 -7.76194 -7.34704 -6.95878 -4.55915 0.82915 1.10828 2.41827 2.61042 2.65251 2.99614 3.02290 3.06521 3.42427 3.69365 3.81284 4.00016 4.28028 4.38041 4.42456 4.75468 4.82745 5.09606 5.24764 5.32473 5.72436 5.76807 5.79407 5.94264 6.06148 6.09005 6.23829 6.30920 6.72488 6.76505 6.90149 7.01594 7.27044 7.38825 7.65054 7.77925 7.89186 8.32994 8.57746 8.64000 9.97330 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.014713 B = 0.003918 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.623272 B = 7145.627218 C = 7925.314974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.076 3.924 3 Si 0.913 3.087 4 H -0.258 1.258 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.449 4.449 8 H 0.086 0.914 9 C 0.083 3.917 10 C -0.110 4.110 11 C -0.068 4.068 12 C -0.039 4.039 13 C -0.036 4.036 14 C -0.199 4.199 15 C 0.513 3.487 16 F -0.180 7.180 17 F -0.176 7.176 18 F -0.177 7.177 19 C -0.061 4.061 20 C -0.157 4.157 21 C 0.138 3.862 22 F -0.120 7.120 23 C -0.199 4.199 24 C -0.121 4.121 25 C -0.021 4.021 26 F -0.161 7.161 27 H 0.285 0.715 28 H 0.131 0.869 29 H 0.143 0.857 30 H 0.142 0.858 31 H 0.144 0.856 32 H 0.101 0.899 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.108 -4.354 7.448 12.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.143 4.143 3 Si 0.737 3.263 4 H -0.181 1.181 5 H -0.197 1.197 6 H -0.194 1.194 7 C -0.477 4.477 8 H 0.104 0.896 9 C 0.080 3.920 10 C -0.129 4.129 11 C -0.068 4.068 12 C -0.040 4.040 13 C -0.054 4.054 14 C -0.201 4.201 15 C 0.459 3.541 16 F -0.162 7.162 17 F -0.157 7.157 18 F -0.159 7.159 19 C -0.079 4.079 20 C -0.176 4.176 21 C 0.119 3.881 22 F -0.098 7.098 23 C -0.219 4.219 24 C -0.140 4.140 25 C -0.041 4.041 26 F -0.140 7.140 27 H 0.096 0.904 28 H 0.148 0.852 29 H 0.161 0.839 30 H 0.160 0.840 31 H 0.162 0.838 32 H 0.120 0.880 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -9.257 -4.177 7.399 12.565 hybrid contribution 0.410 0.727 -0.225 0.865 sum -8.846 -3.449 7.174 11.900 Atomic orbital electron populations 1.69791 1.07667 1.29778 1.33877 1.25937 0.94805 1.01654 0.91937 0.86165 0.81094 0.80286 0.78783 1.18113 1.19706 1.19421 1.19574 0.98300 0.90732 1.39128 0.89589 1.17532 0.92399 0.91163 0.90911 1.21258 0.96994 0.96161 0.98513 1.18236 0.94435 0.94723 0.99449 1.19034 0.95118 0.96631 0.93254 1.20852 0.89881 0.96209 0.98457 1.19843 0.94154 1.06430 0.99671 1.18221 0.83929 0.77316 0.74656 1.93145 1.65665 1.95142 1.62204 1.93228 1.89798 1.87107 1.45549 1.93216 1.93666 1.33325 1.95647 1.20699 0.98160 0.94426 0.94589 1.20998 0.92088 1.03265 1.01265 1.17976 0.83183 0.93361 0.93601 1.91566 1.49340 1.77763 1.91176 1.20114 1.00458 0.95298 1.05995 1.20402 0.97227 0.95884 1.00478 1.17937 0.90527 0.94819 1.00859 1.91283 1.53155 1.97315 1.72261 0.90437 0.85171 0.83941 0.83995 0.83843 0.88041 0.87645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.42 10.97 55.55 0.61 -18.81 16 2 C 0.08 1.83 5.15 -17.34 -0.09 1.75 16 3 Si 0.91 18.15 29.59 -169.99 -5.03 13.12 16 4 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 5 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 6 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 7 C -0.45 -11.69 8.77 -37.78 -0.33 -12.02 16 8 H 0.09 2.22 7.73 -52.49 -0.41 1.81 16 9 C 0.08 2.16 5.57 -106.80 -0.59 1.57 16 10 C -0.11 -2.68 7.48 -38.55 -0.29 -2.97 16 11 C -0.07 -1.46 5.31 -104.97 -0.56 -2.02 16 12 C -0.04 -0.71 5.47 -104.83 -0.57 -1.29 16 13 C -0.04 -0.56 9.05 -39.26 -0.36 -0.91 16 14 C -0.20 -2.69 5.37 -104.67 -0.56 -3.25 16 15 C 0.51 6.46 3.31 36.01 0.12 6.58 16 16 F -0.18 -2.09 15.96 2.25 0.04 -2.06 16 17 F -0.18 -2.37 17.23 2.25 0.04 -2.33 16 18 F -0.18 -2.28 17.24 2.25 0.04 -2.24 16 19 C -0.06 -0.72 9.42 -39.53 -0.37 -1.10 16 20 C -0.16 -2.04 10.02 -39.56 -0.40 -2.43 16 21 C 0.14 2.32 7.15 -39.08 -0.28 2.04 16 22 F -0.12 -2.24 15.88 2.25 0.04 -2.20 16 23 C -0.20 -4.09 9.51 -38.99 -0.37 -4.46 16 24 C -0.12 -2.62 9.99 -39.65 -0.40 -3.02 16 25 C -0.02 -0.52 7.31 -38.58 -0.28 -0.80 16 26 F -0.16 -3.97 16.71 2.25 0.04 -3.93 16 27 H 0.28 6.35 8.30 -40.82 -0.34 6.02 16 28 H 0.13 3.30 5.90 -52.49 -0.31 2.99 16 29 H 0.14 2.12 8.04 -52.48 -0.42 1.69 16 30 H 0.14 1.30 7.14 -52.49 -0.37 0.93 16 31 H 0.14 1.45 8.06 -52.49 -0.42 1.02 16 32 H 0.10 1.80 8.04 -52.49 -0.42 1.38 16 33 H 0.11 2.00 8.06 -52.48 -0.42 1.58 16 LS Contribution 315.05 15.07 4.75 4.75 Total: -1.00 -26.34 315.05 -6.73 -33.07 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -1.91 Total: 2.97 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: -5.33 Total: -22.34 kcal Atomic # 7 Polarization: -19.42 SS G_CDS: 0.61 Total: -18.81 kcal Atomic # 9 Polarization: -12.95 SS G_CDS: 0.19 Total: -12.76 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.03 Total: 13.12 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -26.34 -6.73 -33.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241098579.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.744 kcal (2) G-P(sol) polarization free energy of solvation -26.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds