Wall clock time and date at job start Tue Mar 31 2020 15:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30848 * 1 3 3 Si 1.86809 * 119.99578 * 2 1 4 4 H 1.48498 * 109.46825 * 270.00122 * 3 2 1 5 5 H 1.48493 * 109.46953 * 30.00199 * 3 2 1 6 6 H 1.48499 * 109.47039 * 150.00199 * 3 2 1 7 7 C 1.39927 * 120.00385 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99564 * 197.80337 * 7 2 1 9 9 C 1.41314 * 120.00230 * 17.79661 * 7 2 1 10 10 C 1.40783 * 120.20540 * 24.63543 * 9 7 2 11 11 C 1.37619 * 120.02135 * 179.97438 * 10 9 7 12 12 C 1.38506 * 120.45318 * 0.04495 * 11 10 9 13 13 C 1.39554 * 120.41931 * 359.95315 * 12 11 10 14 14 C 1.48367 * 120.01742 * 179.97438 * 13 12 11 15 15 C 1.39332 * 120.13364 * 65.00177 * 14 13 12 16 16 C 1.37998 * 119.90789 * 179.97438 * 15 14 13 17 17 C 1.50696 * 119.91812 * 179.97438 * 16 15 14 18 18 F 1.39906 * 109.47121 * 90.00244 * 17 16 15 19 19 F 1.39901 * 109.47445 * 210.00248 * 17 16 15 20 20 F 1.39901 * 109.47348 * 330.00446 * 17 16 15 21 21 C 1.38356 * 120.17079 * 0.02562 * 16 15 14 22 22 C 1.38257 * 120.27012 * 359.97387 * 21 16 15 23 23 C 1.38273 * 120.09646 * 0.02562 * 22 21 16 24 24 F 1.35098 * 120.09046 * 180.02562 * 23 22 21 25 25 C 1.39113 * 119.96847 * 0.27849 * 13 12 11 26 26 F 1.35103 * 120.22374 * 179.71989 * 25 13 12 27 27 H 0.96995 * 120.00350 * 359.97438 * 1 2 3 28 28 H 1.07998 * 119.99217 * 0.02562 * 10 9 7 29 29 H 1.07999 * 119.77177 * 180.02562 * 11 10 9 30 30 H 1.08000 * 119.78987 * 179.97438 * 12 11 10 31 31 H 1.08010 * 120.04733 * 0.25767 * 15 14 13 32 32 H 1.08002 * 119.86218 * 180.02562 * 21 16 15 33 33 H 1.08000 * 119.95100 * 180.02562 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2424 1.6179 0.0000 4 1 2.4898 2.0465 -1.4001 5 1 1.4398 2.6527 0.7001 6 1 3.5400 1.4404 0.7000 7 6 2.0082 -1.2118 -0.0005 8 1 3.0494 -1.2341 0.2854 9 6 1.3525 -2.4062 -0.3751 10 6 0.2231 -2.3610 -1.2145 11 6 -0.4122 -3.5265 -1.5773 12 6 0.0508 -4.7497 -1.1214 13 6 1.1686 -4.8162 -0.2886 14 6 1.6567 -6.1312 0.1951 15 6 2.1599 -7.0657 -0.7076 16 6 2.6131 -8.2871 -0.2526 17 6 3.1569 -9.2982 -1.2288 18 9 4.5345 -9.1063 -1.3800 19 9 2.9162 -10.5890 -0.7460 20 9 2.5251 -9.1379 -2.4667 21 6 2.5685 -8.5863 1.0975 22 6 2.0705 -7.6645 1.9995 23 6 1.6135 -6.4372 1.5558 24 9 1.1275 -5.5363 2.4374 25 6 1.8214 -3.6485 0.0930 26 9 2.9007 -3.7065 0.9036 27 1 -0.4850 0.8400 0.0004 28 1 -0.1443 -1.4113 -1.5745 29 1 -1.2780 -3.4872 -2.2217 30 1 -0.4563 -5.6577 -1.4125 31 1 2.1996 -6.8326 -1.7615 32 1 2.9248 -9.5437 1.4482 33 1 2.0385 -7.9033 3.0523 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241098632.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:56 Heat of formation + Delta-G solvation = -205.539344 kcal Electronic energy + Delta-G solvation = -27136.166337 eV Core-core repulsion = 22347.089993 eV Total energy + Delta-G solvation = -4789.076344 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.20420 -48.67794 -47.72758 -47.65362 -47.36167 -39.22513 -37.30683 -34.12152 -32.13328 -31.54092 -29.78134 -28.28092 -25.83471 -25.44767 -23.43628 -22.17029 -20.95620 -20.58792 -18.53874 -18.46624 -18.41792 -17.38973 -17.11580 -16.22255 -16.12828 -15.57618 -15.20168 -14.89556 -14.58142 -14.53991 -14.45507 -14.15343 -14.08191 -14.00811 -13.82502 -13.78646 -13.61670 -13.19705 -13.01592 -12.93132 -12.44534 -12.00413 -11.87834 -11.76156 -11.45330 -11.27483 -11.11711 -10.79641 -10.55780 -10.01014 -9.77296 -9.40045 -9.11241 -8.82142 -7.66922 -7.45856 -6.94943 -4.54699 0.79836 1.08636 2.43939 2.54956 2.62503 2.99560 3.04280 3.05737 3.34083 3.65743 3.81890 3.96801 4.26070 4.37581 4.38864 4.71820 4.76667 5.03135 5.21779 5.33125 5.65471 5.69326 5.78109 5.96316 6.02730 6.11577 6.22449 6.40514 6.64033 6.78102 6.91022 7.02185 7.28884 7.40955 7.73573 7.81393 7.91572 8.37271 8.59196 8.66447 9.98953 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.020420 B = 0.003412 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.878002 B = 8204.371559 C = 8427.764405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.077 3.923 3 Si 0.914 3.086 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.452 4.452 8 H 0.084 0.916 9 C 0.085 3.915 10 C -0.137 4.137 11 C -0.110 4.110 12 C -0.197 4.197 13 C -0.078 4.078 14 C -0.048 4.048 15 C -0.032 4.032 16 C -0.203 4.203 17 C 0.513 3.487 18 F -0.177 7.177 19 F -0.179 7.179 20 F -0.176 7.176 21 C -0.053 4.053 22 C -0.159 4.159 23 C 0.147 3.853 24 F -0.118 7.118 25 C 0.000 4.000 26 F -0.157 7.157 27 H 0.285 0.715 28 H 0.128 0.872 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.145 0.855 32 H 0.141 0.859 33 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.445 -12.861 -0.384 13.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.142 4.142 3 Si 0.738 3.262 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.480 4.480 8 H 0.102 0.898 9 C 0.082 3.918 10 C -0.157 4.157 11 C -0.129 4.129 12 C -0.216 4.216 13 C -0.079 4.079 14 C -0.049 4.049 15 C -0.050 4.050 16 C -0.204 4.204 17 C 0.459 3.541 18 F -0.158 7.158 19 F -0.161 7.161 20 F -0.157 7.157 21 C -0.072 4.072 22 C -0.178 4.178 23 C 0.127 3.873 24 F -0.096 7.096 25 C -0.021 4.021 26 F -0.136 7.136 27 H 0.096 0.904 28 H 0.146 0.854 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.163 0.837 32 H 0.159 0.841 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.276 -12.680 -0.319 12.887 hybrid contribution 0.447 0.731 0.219 0.884 sum 2.722 -11.949 -0.100 12.256 Atomic orbital electron populations 1.69801 1.07661 1.29785 1.33856 1.25921 0.94782 1.01569 0.91958 0.86199 0.80563 0.79914 0.79531 1.19008 1.20081 1.18378 1.19536 0.98499 0.90872 1.39108 0.89762 1.17546 0.92710 0.90564 0.90988 1.21287 0.97837 0.97504 0.99042 1.20650 0.99238 0.92683 1.00319 1.20187 0.99016 0.97023 1.05393 1.18008 0.98763 0.88299 1.02839 1.18933 0.99589 0.95466 0.90925 1.20911 0.93290 0.90152 1.00676 1.19843 1.09987 0.96287 0.94292 1.18200 0.75763 0.80135 0.79965 1.93230 1.31645 1.95030 1.95917 1.93172 1.94188 1.40808 1.87911 1.93198 1.82053 1.95409 1.45058 1.20659 0.96392 0.99405 0.90700 1.21000 1.02943 0.92649 1.01216 1.18025 0.95251 0.87142 0.86865 1.91576 1.84537 1.66256 1.67281 1.17783 0.90645 0.93578 1.00061 1.91289 1.53499 1.97196 1.71569 0.90430 0.85433 0.88235 0.88178 0.83680 0.84111 0.83704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.36 10.96 55.55 0.61 -18.75 16 2 C 0.08 1.86 5.14 -17.34 -0.09 1.77 16 3 Si 0.91 18.10 29.60 -169.99 -5.03 13.07 16 4 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 5 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 6 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 7 C -0.45 -11.79 8.78 -37.78 -0.33 -12.12 16 8 H 0.08 2.19 7.74 -52.49 -0.41 1.78 16 9 C 0.09 2.21 5.57 -106.80 -0.60 1.62 16 10 C -0.14 -3.34 8.69 -38.85 -0.34 -3.68 16 11 C -0.11 -2.37 10.01 -39.71 -0.40 -2.77 16 12 C -0.20 -4.08 9.73 -38.99 -0.38 -4.46 16 13 C -0.08 -1.70 5.02 -104.91 -0.53 -2.23 16 14 C -0.05 -0.89 5.01 -104.84 -0.52 -1.41 16 15 C -0.03 -0.50 9.08 -39.26 -0.36 -0.86 16 16 C -0.20 -2.71 5.45 -104.67 -0.57 -3.28 16 17 C 0.51 6.35 3.36 36.00 0.12 6.48 16 18 F -0.18 -2.28 17.30 2.25 0.04 -2.24 16 19 F -0.18 -2.07 16.45 2.25 0.04 -2.03 16 20 F -0.18 -2.26 16.46 2.25 0.04 -2.22 16 21 C -0.05 -0.64 9.39 -39.53 -0.37 -1.01 16 22 C -0.16 -2.09 10.02 -39.56 -0.40 -2.49 16 23 C 0.15 2.53 7.05 -39.09 -0.28 2.26 16 24 F -0.12 -2.32 16.66 2.25 0.04 -2.28 16 25 C 0.00 -0.01 7.05 -38.29 -0.27 -0.28 16 26 F -0.16 -3.91 16.10 2.25 0.04 -3.87 16 27 H 0.28 6.32 8.30 -40.82 -0.34 5.98 16 28 H 0.13 3.16 6.16 -52.49 -0.32 2.83 16 29 H 0.10 1.86 8.06 -52.49 -0.42 1.43 16 30 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 31 H 0.15 2.13 7.60 -52.48 -0.40 1.73 16 32 H 0.14 1.25 7.59 -52.49 -0.40 0.86 16 33 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 315.72 15.07 4.76 4.76 Total: -1.00 -26.67 315.72 -6.71 -33.37 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -1.93 Total: 2.64 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: -5.30 Total: -22.45 kcal Atomic # 7 Polarization: -19.36 SS G_CDS: 0.61 Total: -18.75 kcal Atomic # 9 Polarization: -12.83 SS G_CDS: 0.19 Total: -12.64 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.07 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -26.67 -6.71 -33.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241098632.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.165 kcal (2) G-P(sol) polarization free energy of solvation -26.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds