Wall clock time and date at job start Tue Mar 31 2020 15:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30848 * 1 3 3 Si 1.86809 * 119.99578 * 2 1 4 4 H 1.48498 * 109.46825 * 270.00122 * 3 2 1 5 5 H 1.48493 * 109.46953 * 30.00199 * 3 2 1 6 6 H 1.48499 * 109.47039 * 150.00199 * 3 2 1 7 7 C 1.39927 * 120.00385 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99564 * 197.80337 * 7 2 1 9 9 C 1.41314 * 120.00230 * 17.79661 * 7 2 1 10 10 C 1.40783 * 120.20540 * 24.63543 * 9 7 2 11 11 C 1.37619 * 120.02135 * 179.97438 * 10 9 7 12 12 C 1.38506 * 120.45318 * 0.04495 * 11 10 9 13 13 C 1.39554 * 120.41931 * 359.95315 * 12 11 10 14 14 C 1.48367 * 120.01742 * 179.97438 * 13 12 11 15 15 C 1.39332 * 120.13364 * 65.00177 * 14 13 12 16 16 C 1.37998 * 119.90789 * 179.97438 * 15 14 13 17 17 C 1.50696 * 119.91812 * 179.97438 * 16 15 14 18 18 F 1.39906 * 109.47121 * 90.00244 * 17 16 15 19 19 F 1.39901 * 109.47445 * 210.00248 * 17 16 15 20 20 F 1.39901 * 109.47348 * 330.00446 * 17 16 15 21 21 C 1.38356 * 120.17079 * 0.02562 * 16 15 14 22 22 C 1.38257 * 120.27012 * 359.97387 * 21 16 15 23 23 C 1.38273 * 120.09646 * 0.02562 * 22 21 16 24 24 F 1.35098 * 120.09046 * 180.02562 * 23 22 21 25 25 C 1.39113 * 119.96847 * 0.27849 * 13 12 11 26 26 F 1.35103 * 120.22374 * 179.71989 * 25 13 12 27 27 H 0.96995 * 120.00350 * 359.97438 * 1 2 3 28 28 H 1.07998 * 119.99217 * 0.02562 * 10 9 7 29 29 H 1.07999 * 119.77177 * 180.02562 * 11 10 9 30 30 H 1.08000 * 119.78987 * 179.97438 * 12 11 10 31 31 H 1.08010 * 120.04733 * 0.25767 * 15 14 13 32 32 H 1.08002 * 119.86218 * 180.02562 * 21 16 15 33 33 H 1.08000 * 119.95100 * 180.02562 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2424 1.6179 0.0000 4 1 2.4898 2.0465 -1.4001 5 1 1.4398 2.6527 0.7001 6 1 3.5400 1.4404 0.7000 7 6 2.0082 -1.2118 -0.0005 8 1 3.0494 -1.2341 0.2854 9 6 1.3525 -2.4062 -0.3751 10 6 0.2231 -2.3610 -1.2145 11 6 -0.4122 -3.5265 -1.5773 12 6 0.0508 -4.7497 -1.1214 13 6 1.1686 -4.8162 -0.2886 14 6 1.6567 -6.1312 0.1951 15 6 2.1599 -7.0657 -0.7076 16 6 2.6131 -8.2871 -0.2526 17 6 3.1569 -9.2982 -1.2288 18 9 4.5345 -9.1063 -1.3800 19 9 2.9162 -10.5890 -0.7460 20 9 2.5251 -9.1379 -2.4667 21 6 2.5685 -8.5863 1.0975 22 6 2.0705 -7.6645 1.9995 23 6 1.6135 -6.4372 1.5558 24 9 1.1275 -5.5363 2.4374 25 6 1.8214 -3.6485 0.0930 26 9 2.9007 -3.7065 0.9036 27 1 -0.4850 0.8400 0.0004 28 1 -0.1443 -1.4113 -1.5745 29 1 -1.2780 -3.4872 -2.2217 30 1 -0.4563 -5.6577 -1.4125 31 1 2.1996 -6.8326 -1.7615 32 1 2.9248 -9.5437 1.4482 33 1 2.0385 -7.9033 3.0523 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241098632.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:56 Heat of formation + Delta-G solvation = -216.240633 kcal Electronic energy + Delta-G solvation = -27136.630380 eV Core-core repulsion = 22347.089993 eV Total energy + Delta-G solvation = -4789.540387 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.18595 -50.07251 -49.25364 -48.69182 -48.64736 -40.46629 -39.00058 -35.87297 -33.58764 -32.67013 -31.58589 -29.83429 -27.34079 -26.86039 -24.77749 -23.40742 -22.71090 -22.11017 -19.77836 -19.50972 -19.46779 -18.70595 -18.62760 -17.98911 -17.52411 -17.18099 -16.75705 -16.39559 -16.11298 -15.96231 -15.62040 -15.50175 -15.26709 -15.08414 -14.87251 -14.80034 -14.71112 -14.68908 -14.51071 -14.38014 -13.89028 -13.62831 -13.54676 -13.19367 -12.94311 -12.78761 -12.65655 -12.32853 -12.20506 -11.78033 -11.51303 -11.15887 -10.29295 -10.12949 -9.48144 -9.20898 -8.75410 -6.47575 -0.38512 -0.08285 0.73292 0.77185 1.35424 1.45830 1.48815 1.58891 2.14838 2.17617 2.56358 2.63779 2.95378 3.09520 3.38248 3.41479 3.51347 3.64948 3.88034 3.94319 4.14550 4.43882 4.48265 4.61521 4.71697 4.87015 4.89712 4.91641 4.97941 5.12523 5.21004 5.45819 5.59056 5.63232 5.93702 5.94642 6.09313 6.48872 6.71762 6.80179 8.21255 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.020420 B = 0.003412 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.878002 B = 8204.371559 C = 8427.764405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.041 3.959 3 Si 0.984 3.016 4 H -0.255 1.255 5 H -0.262 1.262 6 H -0.265 1.265 7 C -0.494 4.494 8 H 0.068 0.932 9 C 0.056 3.944 10 C -0.159 4.159 11 C -0.106 4.106 12 C -0.190 4.190 13 C -0.071 4.071 14 C -0.082 4.082 15 C -0.033 4.033 16 C -0.199 4.199 17 C 0.522 3.478 18 F -0.179 7.179 19 F -0.169 7.169 20 F -0.179 7.179 21 C -0.033 4.033 22 C -0.143 4.143 23 C 0.119 3.881 24 F -0.142 7.142 25 C -0.036 4.036 26 F -0.167 7.167 27 H 0.294 0.706 28 H 0.117 0.883 29 H 0.132 0.868 30 H 0.133 0.867 31 H 0.148 0.852 32 H 0.183 0.817 33 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.519 -15.115 -0.419 15.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.175 4.175 3 Si 0.804 3.196 4 H -0.180 1.180 5 H -0.186 1.186 6 H -0.189 1.189 7 C -0.523 4.523 8 H 0.087 0.913 9 C 0.053 3.947 10 C -0.178 4.178 11 C -0.124 4.124 12 C -0.210 4.210 13 C -0.072 4.072 14 C -0.083 4.083 15 C -0.051 4.051 16 C -0.200 4.200 17 C 0.468 3.532 18 F -0.160 7.160 19 F -0.151 7.151 20 F -0.160 7.160 21 C -0.051 4.051 22 C -0.162 4.162 23 C 0.100 3.900 24 F -0.120 7.120 25 C -0.056 4.056 26 F -0.146 7.146 27 H 0.105 0.895 28 H 0.135 0.865 29 H 0.150 0.850 30 H 0.151 0.849 31 H 0.166 0.834 32 H 0.200 0.800 33 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 2.337 -14.957 -0.362 15.143 hybrid contribution 0.401 1.184 0.219 1.270 sum 2.739 -13.773 -0.144 14.043 Atomic orbital electron populations 1.69821 1.08797 1.31181 1.34122 1.26698 0.95571 1.04312 0.90922 0.85167 0.78868 0.75592 0.79927 1.17966 1.18595 1.18905 1.19663 0.98237 0.92551 1.41861 0.91334 1.17918 0.93732 0.91295 0.91754 1.21283 0.98299 0.98238 0.99995 1.21017 0.99554 0.92022 0.99847 1.20640 0.98287 0.97977 1.04048 1.18344 0.98049 0.89263 1.01495 1.18849 1.02519 0.94739 0.92168 1.20883 0.93274 0.90532 1.00427 1.19989 1.09071 0.95581 0.95394 1.17964 0.75507 0.80168 0.79581 1.93234 1.31808 1.95080 1.95898 1.93198 1.94108 1.40008 1.87745 1.93200 1.82101 1.95449 1.45240 1.21154 0.93910 1.00387 0.89634 1.21353 1.00937 0.90684 1.03190 1.18430 0.96852 0.88467 0.86265 1.91516 1.85202 1.67427 1.67864 1.18118 0.91447 0.94654 1.01409 1.91235 1.54065 1.97277 1.72040 0.89472 0.86502 0.85010 0.84869 0.83428 0.79982 0.80359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.38 10.96 21.82 0.24 -41.14 16 2 C 0.04 2.07 5.14 85.25 0.44 2.51 16 3 Si 0.98 38.04 29.60 68.60 2.03 40.07 16 4 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 5 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 6 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 7 C -0.49 -27.40 8.78 23.44 0.21 -27.19 16 8 H 0.07 3.84 7.74 -2.91 -0.02 3.82 16 9 C 0.06 3.07 5.57 -21.27 -0.12 2.95 16 10 C -0.16 -8.00 8.69 22.75 0.20 -7.81 16 11 C -0.11 -4.55 10.01 22.19 0.22 -4.33 16 12 C -0.19 -7.77 9.73 22.65 0.22 -7.55 16 13 C -0.07 -3.12 5.02 -20.05 -0.10 -3.22 16 14 C -0.08 -2.98 5.01 -20.00 -0.10 -3.08 16 15 C -0.03 -0.98 9.08 22.48 0.20 -0.77 16 16 C -0.20 -4.70 5.45 -19.89 -0.11 -4.81 16 17 C 0.52 11.23 3.36 71.23 0.24 11.47 16 18 F -0.18 -4.11 17.30 44.97 0.78 -3.33 16 19 F -0.17 -3.21 16.45 44.97 0.74 -2.47 16 20 F -0.18 -4.13 16.46 44.97 0.74 -3.39 16 21 C -0.03 -0.65 9.39 22.30 0.21 -0.44 16 22 C -0.14 -3.31 10.02 22.28 0.22 -3.09 16 23 C 0.12 4.02 7.05 22.59 0.16 4.18 16 24 F -0.14 -5.65 16.66 44.97 0.75 -4.90 16 25 C -0.04 -1.88 7.05 23.11 0.16 -1.72 16 26 F -0.17 -8.84 16.10 44.97 0.72 -8.12 16 27 H 0.29 13.32 8.30 -92.71 -0.77 12.55 16 28 H 0.12 6.04 6.16 -2.91 -0.02 6.02 16 29 H 0.13 4.69 8.06 -2.91 -0.02 4.67 16 30 H 0.13 4.51 8.06 -2.91 -0.02 4.48 16 31 H 0.15 4.17 7.60 -2.91 -0.02 4.15 16 32 H 0.18 2.12 7.59 -2.91 -0.02 2.10 16 33 H 0.18 2.89 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -61.77 315.72 9.25 -52.52 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 1.20 Total: 13.63 kcal Atomic # 6 Polarization: -44.93 SS G_CDS: 2.05 Total: -42.87 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: 0.24 Total: -41.14 kcal Atomic # 9 Polarization: -25.94 SS G_CDS: 3.73 Total: -22.21 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 2.03 Total: 40.07 kcal Total: -61.77 9.25 -52.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241098632.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.725 kcal (2) G-P(sol) polarization free energy of solvation -61.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds