Wall clock time and date at job start Tue Mar 31 2020 15:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30864 * 1 3 3 Si 1.86797 * 119.99918 * 2 1 4 4 H 1.48501 * 109.47417 * 240.00008 * 3 2 1 5 5 H 1.48501 * 109.47594 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46862 * 120.00289 * 3 2 1 7 7 C 1.39898 * 119.99771 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99983 * 197.92780 * 7 2 1 9 9 C 1.41340 * 119.99969 * 17.93017 * 7 2 1 10 10 C 1.40848 * 120.15568 * 204.55035 * 9 7 2 11 11 C 1.37560 * 120.02498 * 179.97438 * 10 9 7 12 12 C 1.38752 * 120.34872 * 0.25219 * 11 10 9 13 13 F 1.35099 * 119.84238 * 179.74520 * 12 11 10 14 14 C 1.40004 * 120.31321 * 359.49500 * 12 11 10 15 15 C 1.48356 * 120.01756 * 180.25850 * 14 12 11 16 16 C 1.39334 * 120.13637 * 245.24959 * 15 14 12 17 17 C 1.37997 * 119.90682 * 179.97438 * 16 15 14 18 18 C 1.50697 * 119.91625 * 180.02562 * 17 16 15 19 19 F 1.39905 * 109.47385 * 89.99490 * 18 17 16 20 20 F 1.39898 * 109.47241 * 209.99872 * 18 17 16 21 21 F 1.39907 * 109.46942 * 329.99469 * 18 17 16 22 22 C 1.38362 * 120.17144 * 0.02562 * 17 16 15 23 23 C 1.38249 * 120.26917 * 359.97438 * 22 17 16 24 24 C 1.38271 * 120.09856 * 359.74132 * 23 22 17 25 25 F 1.35106 * 120.09064 * 180.25406 * 24 23 22 26 26 C 1.38682 * 119.96705 * 0.50306 * 14 12 11 27 27 H 0.97003 * 119.99717 * 359.97438 * 1 2 3 28 28 H 1.08002 * 119.98385 * 359.97438 * 10 9 7 29 29 H 1.07996 * 119.82559 * 179.97438 * 11 10 9 30 30 H 1.08004 * 120.04664 * 359.95076 * 16 15 14 31 31 H 1.08000 * 119.85807 * 180.02562 * 22 17 16 32 32 H 1.08013 * 119.95035 * 179.97438 * 23 22 17 33 33 H 1.08000 * 120.16958 * 179.77249 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 3.0964 1.6965 -1.2125 5 1 1.2777 2.7465 0.0006 6 1 3.0964 1.6963 1.2125 7 6 2.0081 -1.2116 -0.0005 8 1 3.0488 -1.2345 0.2874 9 6 1.3528 -2.4057 -0.3779 10 6 1.8259 -3.6490 0.0848 11 6 1.1858 -4.8095 -0.2837 12 6 0.0761 -4.7643 -1.1155 13 9 -0.5416 -5.9107 -1.4751 14 6 -0.4095 -3.5360 -1.5796 15 6 -1.5999 -3.4949 -2.4640 16 6 -1.4800 -3.0472 -3.7780 17 6 -2.5902 -3.0114 -4.5968 18 6 -2.4607 -2.5278 -6.0181 19 9 -2.1679 -3.6105 -6.8544 20 9 -3.6636 -1.9387 -6.4218 21 9 -1.4300 -1.5850 -6.0978 22 6 -3.8221 -3.4185 -4.1160 23 6 -3.9493 -3.8640 -2.8135 24 6 -2.8431 -3.9100 -1.9852 25 9 -2.9666 -4.3502 -0.7139 26 6 0.2258 -2.3580 -1.2162 27 1 -0.4850 0.8401 0.0004 28 1 2.6916 -3.6912 0.7293 29 1 1.5515 -5.7611 0.0727 30 1 -0.5195 -2.7282 -4.1551 31 1 -4.6877 -3.3888 -4.7613 32 1 -4.9136 -4.1801 -2.4434 33 1 -0.1439 -1.4089 -1.5753 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241099628.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:31 Heat of formation + Delta-G solvation = -216.031798 kcal Electronic energy + Delta-G solvation = -27366.429037 eV Core-core repulsion = 22576.897706 eV Total energy + Delta-G solvation = -4789.531331 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.21206 -50.07299 -49.35011 -48.72233 -48.66806 -40.47758 -39.05444 -35.61693 -33.88765 -32.67976 -31.33745 -30.10367 -27.10046 -26.84319 -24.81681 -23.37090 -23.02358 -21.96169 -19.76190 -19.53884 -19.48433 -18.80156 -18.64130 -18.01428 -17.46154 -17.24594 -16.79095 -16.36374 -16.07643 -16.03458 -15.62545 -15.52488 -15.22792 -15.09956 -14.88153 -14.82589 -14.72807 -14.68200 -14.44400 -14.29934 -13.95462 -13.80187 -13.52920 -13.15342 -12.94762 -12.81535 -12.59540 -12.47114 -12.19296 -11.81487 -11.45554 -11.06186 -10.31099 -10.14625 -9.45886 -9.28720 -8.72880 -6.40855 -0.38267 -0.08611 0.67487 0.83740 1.39699 1.47783 1.52256 1.56847 2.15839 2.18080 2.54732 2.61452 2.93255 3.08357 3.36224 3.48972 3.50761 3.64111 3.82773 3.92777 4.11866 4.26357 4.48301 4.60228 4.81261 4.85924 4.91344 4.93827 4.96569 5.11203 5.20986 5.41572 5.55970 5.68225 5.76913 5.94996 6.17197 6.49947 6.80950 6.83166 8.23657 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.010736 B = 0.004925 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2607.416871 B = 5684.141745 C = 7111.947673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.038 3.962 3 Si 0.981 3.019 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.257 1.257 7 C -0.483 4.483 8 H 0.087 0.913 9 C 0.075 3.925 10 C -0.207 4.207 11 C -0.115 4.115 12 C -0.042 4.042 13 F -0.166 7.166 14 C -0.076 4.076 15 C -0.080 4.080 16 C -0.040 4.040 17 C -0.199 4.199 18 C 0.522 3.478 19 F -0.176 7.176 20 F -0.169 7.169 21 F -0.182 7.182 22 C -0.035 4.035 23 C -0.142 4.142 24 C 0.122 3.878 25 F -0.139 7.139 26 C -0.139 4.139 27 H 0.292 0.708 28 H 0.121 0.879 29 H 0.132 0.868 30 H 0.139 0.861 31 H 0.185 0.815 32 H 0.183 0.817 33 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.558 -1.959 -8.950 11.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.179 4.179 3 Si 0.802 3.198 4 H -0.183 1.183 5 H -0.194 1.194 6 H -0.181 1.181 7 C -0.512 4.512 8 H 0.106 0.894 9 C 0.073 3.927 10 C -0.227 4.227 11 C -0.134 4.134 12 C -0.062 4.062 13 F -0.145 7.145 14 C -0.077 4.077 15 C -0.081 4.081 16 C -0.058 4.058 17 C -0.201 4.201 18 C 0.468 3.532 19 F -0.157 7.157 20 F -0.150 7.150 21 F -0.163 7.163 22 C -0.052 4.052 23 C -0.160 4.160 24 C 0.102 3.898 25 F -0.117 7.117 26 C -0.158 4.158 27 H 0.102 0.898 28 H 0.139 0.861 29 H 0.150 0.850 30 H 0.157 0.843 31 H 0.202 0.798 32 H 0.200 0.800 33 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.794 -1.852 -8.932 11.998 hybrid contribution 0.495 0.408 0.351 0.731 sum -7.299 -1.443 -8.581 11.358 Atomic orbital electron populations 1.69859 1.09081 1.31095 1.34164 1.26785 0.95432 1.04650 0.91012 0.85246 0.78828 0.75457 0.80286 1.18316 1.19394 1.18108 1.19851 0.98794 0.91870 1.40647 0.89448 1.17946 0.91705 0.93492 0.89585 1.21130 1.04017 0.91676 1.05852 1.20751 0.95097 0.99342 0.98204 1.17424 0.99315 0.80281 1.09174 1.91287 1.82963 1.48678 1.91562 1.18455 0.96099 0.92818 1.00370 1.18887 0.92532 1.02093 0.94624 1.20862 0.99036 0.94771 0.91106 1.19989 0.96804 1.10205 0.93060 1.17968 0.73762 0.75130 0.86375 1.93229 1.93281 1.55125 1.74100 1.93193 1.45410 1.84501 1.91922 1.93205 1.60005 1.66273 1.96822 1.21158 0.96479 0.92597 0.95002 1.21370 0.98527 1.02738 0.93405 1.18344 0.94535 0.97073 0.79834 1.91497 1.96536 1.86525 1.37164 1.21219 0.98823 0.95263 1.00495 0.89765 0.86147 0.85004 0.84312 0.79826 0.80019 0.86528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.60 10.96 21.82 0.24 -40.36 16 2 C 0.04 1.78 5.13 85.24 0.44 2.22 16 3 Si 0.98 35.87 29.60 68.60 2.03 37.90 16 4 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 5 H -0.27 -9.43 7.11 99.48 0.71 -8.73 16 6 H -0.26 -9.06 7.11 99.48 0.71 -8.35 16 7 C -0.48 -24.27 9.04 23.44 0.21 -24.06 16 8 H 0.09 4.15 7.91 -2.91 -0.02 4.12 16 9 C 0.08 3.86 5.57 -21.31 -0.12 3.74 16 10 C -0.21 -9.66 9.78 22.75 0.22 -9.44 16 11 C -0.12 -5.10 9.99 22.23 0.22 -4.87 16 12 C -0.04 -1.96 7.09 22.82 0.16 -1.79 16 13 F -0.17 -7.40 16.65 44.97 0.75 -6.66 16 14 C -0.08 -3.57 5.01 -20.05 -0.10 -3.67 16 15 C -0.08 -3.20 5.00 -20.01 -0.10 -3.30 16 16 C -0.04 -1.35 9.08 22.48 0.20 -1.14 16 17 C -0.20 -5.39 5.45 -19.89 -0.11 -5.50 16 18 C 0.52 12.89 3.36 71.23 0.24 13.13 16 19 F -0.18 -4.35 17.30 44.97 0.78 -3.57 16 20 F -0.17 -3.70 16.45 44.97 0.74 -2.96 16 21 F -0.18 -5.02 16.45 44.97 0.74 -4.28 16 22 C -0.03 -0.76 9.39 22.30 0.21 -0.55 16 23 C -0.14 -3.54 10.01 22.28 0.22 -3.31 16 24 C 0.12 4.32 7.06 22.59 0.16 4.48 16 25 F -0.14 -5.53 16.68 44.97 0.75 -4.78 16 26 C -0.14 -7.00 8.36 22.94 0.19 -6.81 16 27 H 0.29 13.16 8.30 -92.71 -0.77 12.39 16 28 H 0.12 5.08 8.06 -2.91 -0.02 5.06 16 29 H 0.13 4.98 8.06 -2.91 -0.02 4.95 16 30 H 0.14 4.74 7.60 -2.91 -0.02 4.72 16 31 H 0.18 2.50 7.59 -2.91 -0.02 2.48 16 32 H 0.18 3.12 8.06 -2.90 -0.02 3.10 16 33 H 0.12 6.12 6.16 -2.91 -0.02 6.10 16 Total: -1.00 -57.59 316.46 9.28 -48.31 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 1.20 Total: 17.27 kcal Atomic # 6 Polarization: -42.93 SS G_CDS: 2.06 Total: -40.87 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: 0.24 Total: -40.36 kcal Atomic # 9 Polarization: -26.01 SS G_CDS: 3.76 Total: -22.25 kcal Atomic # 14 Polarization: 35.87 SS G_CDS: 2.03 Total: 37.90 kcal Total: -57.59 9.28 -48.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241099628.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.719 kcal (2) G-P(sol) polarization free energy of solvation -57.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds