Wall clock time and date at job start Tue Mar 31 2020 15:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30792 * 1 3 3 Si 1.86807 * 119.99875 * 2 1 4 4 H 1.48500 * 109.47214 * 275.27410 * 3 2 1 5 5 H 1.48501 * 109.46941 * 35.27572 * 3 2 1 6 6 H 1.48499 * 109.47254 * 155.27201 * 3 2 1 7 7 C 1.40065 * 120.00395 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99541 * 340.80698 * 7 2 1 9 9 C 1.40780 * 120.00118 * 160.81339 * 7 2 1 10 10 C 1.41035 * 120.34557 * 316.26924 * 9 7 2 11 11 F 1.35098 * 120.10262 * 0.02562 * 10 9 7 12 12 C 1.37730 * 119.79824 * 180.27627 * 10 9 7 13 13 C 1.38815 * 120.52756 * 359.75054 * 12 10 9 14 14 C 1.38136 * 120.71766 * 359.97438 * 13 12 10 15 15 C 1.39081 * 120.17236 * 0.02562 * 14 13 12 16 16 C 1.47846 * 120.25784 * 179.97438 * 15 14 13 17 17 C 1.39642 * 120.16293 * 65.00632 * 16 15 14 18 18 C 1.37891 * 119.87564 * 179.97438 * 17 16 15 19 19 C 1.50699 * 119.89669 * 179.97438 * 18 17 16 20 20 F 1.39901 * 109.47166 * 89.99837 * 19 18 17 21 21 F 1.39904 * 109.46934 * 209.99536 * 19 18 17 22 22 F 1.39896 * 109.47182 * 329.99898 * 19 18 17 23 23 C 1.38452 * 120.20423 * 359.97438 * 18 17 16 24 24 C 1.38289 * 120.33327 * 359.97438 * 23 18 17 25 25 C 1.38222 * 120.12029 * 359.97438 * 24 23 18 26 26 F 1.35103 * 120.10468 * 180.02562 * 25 24 23 27 27 H 0.96998 * 120.00346 * 359.97438 * 1 2 3 28 28 H 1.08003 * 119.73928 * 179.76455 * 12 10 9 29 29 H 1.08004 * 119.64384 * 179.97438 * 13 12 10 30 30 H 1.07998 * 119.91014 * 180.02562 * 14 13 12 31 31 H 1.08001 * 120.06028 * 0.24358 * 17 16 15 32 32 H 1.08001 * 119.83159 * 180.02562 * 23 18 17 33 33 H 1.07997 * 119.94208 * 180.02562 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6178 0.0000 4 1 2.3780 2.1109 -1.3941 5 1 1.4995 2.6180 0.8086 6 1 3.5907 1.4107 0.5857 7 6 2.0083 -1.2130 -0.0005 8 1 1.5134 -2.1224 0.3065 9 6 3.3575 -1.2466 -0.4012 10 6 3.7797 -0.5342 -1.5429 11 9 2.8895 0.1865 -2.2594 12 6 5.1013 -0.5795 -1.9280 13 6 6.0234 -1.3172 -1.1983 14 6 5.6346 -2.0184 -0.0735 15 6 4.3075 -1.9932 0.3420 16 6 3.8892 -2.7435 1.5453 17 6 4.3807 -2.3845 2.8021 18 6 3.9862 -3.0881 3.9205 19 6 4.5168 -2.7015 5.2769 20 9 3.6658 -1.7555 5.8583 21 9 4.5803 -3.8358 6.0934 22 9 5.7969 -2.1543 5.1384 23 6 3.1041 -4.1485 3.8010 24 6 2.6112 -4.5106 2.5607 25 6 2.9968 -3.8141 1.4308 26 9 2.5146 -4.1678 0.2193 27 1 -0.4850 0.8400 0.0004 28 1 5.4228 -0.0367 -2.8046 29 1 7.0561 -1.3432 -1.5134 30 1 6.3630 -2.5878 0.4847 31 1 5.0652 -1.5547 2.8985 32 1 2.7988 -4.6951 4.6810 33 1 1.9231 -5.3385 2.4749 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241100471.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:27 Heat of formation + Delta-G solvation = -195.142546 kcal Electronic energy + Delta-G solvation = -27849.696510 eV Core-core repulsion = 23061.071005 eV Total energy + Delta-G solvation = -4788.625505 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.06362 -48.43086 -47.76975 -47.59492 -47.50705 -39.09988 -37.41535 -33.75267 -32.28876 -31.32665 -30.39497 -28.52969 -25.62037 -25.45013 -23.28928 -21.96064 -21.13434 -20.44113 -18.38897 -18.32392 -18.15503 -17.85557 -17.15878 -16.17466 -15.91244 -15.66383 -15.27466 -14.81823 -14.50025 -14.47071 -14.38240 -14.17366 -14.12212 -13.97994 -13.73874 -13.68978 -13.43803 -13.23075 -13.00385 -12.88369 -12.43521 -12.17478 -11.88750 -11.78246 -11.50823 -11.29409 -10.99040 -10.72233 -10.44439 -10.26308 -9.75714 -9.24609 -8.90579 -8.61981 -7.74320 -7.66938 -7.03282 -4.67221 1.04430 1.32374 2.16848 2.31304 2.77053 3.13007 3.15129 3.22229 3.56100 3.82595 3.93765 4.12718 4.28367 4.52074 4.55029 4.88197 4.98336 5.00919 5.24898 5.46390 5.54626 5.70905 5.85270 5.96216 6.07461 6.14997 6.25103 6.27007 6.46485 6.55352 6.88099 6.99898 7.06620 7.23784 7.35055 7.43715 7.80001 8.15670 8.37155 8.58101 9.96526 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.013641 B = 0.005009 C = 0.004827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.216884 B = 5588.508894 C = 5799.873126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.094 3.906 3 Si 0.902 3.098 4 H -0.257 1.257 5 H -0.289 1.289 6 H -0.250 1.250 7 C -0.453 4.453 8 H 0.102 0.898 9 C 0.089 3.911 10 C -0.013 4.013 11 F -0.144 7.144 12 C -0.109 4.109 13 C -0.213 4.213 14 C -0.066 4.066 15 C -0.156 4.156 16 C -0.014 4.014 17 C -0.041 4.041 18 C -0.202 4.202 19 C 0.513 3.487 20 F -0.177 7.177 21 F -0.181 7.181 22 F -0.178 7.178 23 C -0.060 4.060 24 C -0.159 4.159 25 C 0.147 3.853 26 F -0.120 7.120 27 H 0.287 0.713 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.141 0.859 32 H 0.137 0.863 33 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.062 -5.205 7.128 11.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.128 4.128 3 Si 0.727 3.273 4 H -0.182 1.182 5 H -0.216 1.216 6 H -0.173 1.173 7 C -0.481 4.481 8 H 0.119 0.881 9 C 0.085 3.915 10 C -0.033 4.033 11 F -0.123 7.123 12 C -0.128 4.128 13 C -0.232 4.232 14 C -0.084 4.084 15 C -0.158 4.158 16 C -0.015 4.015 17 C -0.059 4.059 18 C -0.203 4.203 19 C 0.459 3.541 20 F -0.158 7.158 21 F -0.162 7.162 22 F -0.160 7.160 23 C -0.078 4.078 24 C -0.178 4.178 25 C 0.127 3.873 26 F -0.098 7.098 27 H 0.098 0.902 28 H 0.127 0.873 29 H 0.126 0.874 30 H 0.123 0.877 31 H 0.158 0.842 32 H 0.155 0.845 33 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.722 -5.086 7.098 11.019 hybrid contribution -0.067 0.914 -0.156 0.929 sum 6.655 -4.172 6.942 10.483 Atomic orbital electron populations 1.69658 1.08174 1.30535 1.33195 1.26104 0.94732 1.01552 0.90385 0.86559 0.81165 0.80215 0.79349 1.18166 1.21569 1.17335 1.19271 0.92880 0.96715 1.39187 0.88060 1.17560 0.93551 0.90894 0.89517 1.17896 0.87073 1.04057 0.94292 1.91239 1.68252 1.75728 1.77090 1.20742 0.91950 1.00169 0.99965 1.20170 0.98164 1.05351 0.99529 1.20715 0.94044 0.97600 0.96049 1.18256 0.92731 1.08659 0.96122 1.18583 0.95665 0.93541 0.93678 1.20907 0.97794 0.97593 0.89639 1.19774 1.06143 1.02761 0.91660 1.18259 0.75482 0.74504 0.85894 1.93229 1.70707 1.65758 1.86149 1.93163 1.96214 1.51432 1.75434 1.93180 1.40591 1.86223 1.95963 1.20591 0.94623 0.94915 0.97686 1.20952 1.03322 1.02432 0.91066 1.18052 0.94353 0.94132 0.80754 1.91547 1.85679 1.90530 1.42025 0.90208 0.87253 0.87383 0.87662 0.84150 0.84501 0.84094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.04 13.93 55.55 0.77 -20.27 16 2 C 0.09 2.45 4.98 -17.31 -0.09 2.36 16 3 Si 0.90 21.14 24.72 -169.99 -4.20 16.94 16 4 H -0.26 -6.03 6.29 56.52 0.36 -5.67 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 6 H -0.25 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.45 -11.88 8.30 -37.94 -0.31 -12.19 16 8 H 0.10 2.77 5.87 -52.49 -0.31 2.46 16 9 C 0.09 2.15 4.57 -106.49 -0.49 1.66 16 10 C -0.01 -0.31 5.65 -38.71 -0.22 -0.53 16 11 F -0.14 -3.58 12.91 2.25 0.03 -3.55 16 12 C -0.11 -2.22 9.99 -39.55 -0.40 -2.62 16 13 C -0.21 -3.94 10.03 -39.41 -0.40 -4.34 16 14 C -0.07 -1.24 9.71 -39.31 -0.38 -1.62 16 15 C -0.16 -3.33 5.06 -104.27 -0.53 -3.85 16 16 C -0.01 -0.26 4.72 -104.84 -0.49 -0.76 16 17 C -0.04 -0.69 9.09 -39.18 -0.36 -1.04 16 18 C -0.20 -3.00 5.45 -104.67 -0.57 -3.57 16 19 C 0.51 7.03 3.36 36.01 0.12 7.15 16 20 F -0.18 -2.58 17.30 2.25 0.04 -2.54 16 21 F -0.18 -2.30 16.45 2.25 0.04 -2.26 16 22 F -0.18 -2.45 16.45 2.25 0.04 -2.42 16 23 C -0.06 -0.81 9.39 -39.48 -0.37 -1.18 16 24 C -0.16 -2.35 10.01 -39.57 -0.40 -2.75 16 25 C 0.15 2.70 6.17 -38.98 -0.24 2.46 16 26 F -0.12 -2.45 15.44 2.25 0.03 -2.41 16 27 H 0.29 6.95 8.30 -40.82 -0.34 6.61 16 28 H 0.11 1.95 8.06 -52.48 -0.42 1.52 16 29 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 30 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 31 H 0.14 2.20 7.60 -52.49 -0.40 1.81 16 32 H 0.14 1.46 7.59 -52.49 -0.40 1.06 16 33 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 305.77 15.07 4.61 4.61 Total: -1.00 -26.95 305.77 -5.73 -32.69 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: -1.98 Total: 0.03 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: -5.11 Total: -20.82 kcal Atomic # 7 Polarization: -21.04 SS G_CDS: 0.77 Total: -20.27 kcal Atomic # 9 Polarization: -13.36 SS G_CDS: 0.18 Total: -13.18 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.20 Total: 16.94 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -26.95 -5.73 -32.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241100471.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.456 kcal (2) G-P(sol) polarization free energy of solvation -26.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds