Wall clock time and date at job start Tue Mar 31 2020 15:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30792 * 1 3 3 Si 1.86807 * 119.99875 * 2 1 4 4 H 1.48500 * 109.47214 * 275.27410 * 3 2 1 5 5 H 1.48501 * 109.46941 * 35.27572 * 3 2 1 6 6 H 1.48499 * 109.47254 * 155.27201 * 3 2 1 7 7 C 1.40065 * 120.00395 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99541 * 340.80698 * 7 2 1 9 9 C 1.40780 * 120.00118 * 160.81339 * 7 2 1 10 10 C 1.41035 * 120.34557 * 316.26924 * 9 7 2 11 11 F 1.35098 * 120.10262 * 0.02562 * 10 9 7 12 12 C 1.37730 * 119.79824 * 180.27627 * 10 9 7 13 13 C 1.38815 * 120.52756 * 359.75054 * 12 10 9 14 14 C 1.38136 * 120.71766 * 359.97438 * 13 12 10 15 15 C 1.39081 * 120.17236 * 0.02562 * 14 13 12 16 16 C 1.47846 * 120.25784 * 179.97438 * 15 14 13 17 17 C 1.39642 * 120.16293 * 65.00632 * 16 15 14 18 18 C 1.37891 * 119.87564 * 179.97438 * 17 16 15 19 19 C 1.50699 * 119.89669 * 179.97438 * 18 17 16 20 20 F 1.39901 * 109.47166 * 89.99837 * 19 18 17 21 21 F 1.39904 * 109.46934 * 209.99536 * 19 18 17 22 22 F 1.39896 * 109.47182 * 329.99898 * 19 18 17 23 23 C 1.38452 * 120.20423 * 359.97438 * 18 17 16 24 24 C 1.38289 * 120.33327 * 359.97438 * 23 18 17 25 25 C 1.38222 * 120.12029 * 359.97438 * 24 23 18 26 26 F 1.35103 * 120.10468 * 180.02562 * 25 24 23 27 27 H 0.96998 * 120.00346 * 359.97438 * 1 2 3 28 28 H 1.08003 * 119.73928 * 179.76455 * 12 10 9 29 29 H 1.08004 * 119.64384 * 179.97438 * 13 12 10 30 30 H 1.07998 * 119.91014 * 180.02562 * 14 13 12 31 31 H 1.08001 * 120.06028 * 0.24358 * 17 16 15 32 32 H 1.08001 * 119.83159 * 180.02562 * 23 18 17 33 33 H 1.07997 * 119.94208 * 180.02562 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6178 0.0000 4 1 2.3780 2.1109 -1.3941 5 1 1.4995 2.6180 0.8086 6 1 3.5907 1.4107 0.5857 7 6 2.0083 -1.2130 -0.0005 8 1 1.5134 -2.1224 0.3065 9 6 3.3575 -1.2466 -0.4012 10 6 3.7797 -0.5342 -1.5429 11 9 2.8895 0.1865 -2.2594 12 6 5.1013 -0.5795 -1.9280 13 6 6.0234 -1.3172 -1.1983 14 6 5.6346 -2.0184 -0.0735 15 6 4.3075 -1.9932 0.3420 16 6 3.8892 -2.7435 1.5453 17 6 4.3807 -2.3845 2.8021 18 6 3.9862 -3.0881 3.9205 19 6 4.5168 -2.7015 5.2769 20 9 3.6658 -1.7555 5.8583 21 9 4.5803 -3.8358 6.0934 22 9 5.7969 -2.1543 5.1384 23 6 3.1041 -4.1485 3.8010 24 6 2.6112 -4.5106 2.5607 25 6 2.9968 -3.8141 1.4308 26 9 2.5146 -4.1678 0.2193 27 1 -0.4850 0.8400 0.0004 28 1 5.4228 -0.0367 -2.8046 29 1 7.0561 -1.3432 -1.5134 30 1 6.3630 -2.5878 0.4847 31 1 5.0652 -1.5547 2.8985 32 1 2.7988 -4.6951 4.6810 33 1 1.9231 -5.3385 2.4749 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241100471.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:26 Heat of formation + Delta-G solvation = -207.655982 kcal Electronic energy + Delta-G solvation = -27850.239133 eV Core-core repulsion = 23061.071005 eV Total energy + Delta-G solvation = -4789.168128 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.15349 -49.90449 -49.60769 -48.65732 -48.61808 -40.46773 -38.95932 -35.56018 -33.74173 -32.56518 -32.09877 -30.02862 -27.18707 -26.79493 -24.68193 -23.29270 -22.80642 -21.89846 -19.81762 -19.48281 -19.42359 -19.29346 -18.50799 -17.71560 -17.53770 -17.17764 -16.92448 -16.42343 -16.24152 -15.82721 -15.67023 -15.48452 -15.40686 -15.06980 -14.90252 -14.87341 -14.77226 -14.62665 -14.54117 -14.27020 -14.03680 -13.78978 -13.47169 -13.24301 -13.04112 -12.78793 -12.53591 -12.29533 -12.12112 -11.98934 -11.45711 -11.13082 -10.18546 -10.00163 -9.40370 -9.30196 -8.90305 -6.56518 -0.24604 0.03581 0.57533 0.60343 1.24327 1.29216 1.35219 1.63947 2.07435 2.27525 2.52827 2.68942 3.01531 3.14299 3.27481 3.43088 3.63608 3.75487 3.87302 4.04580 4.22604 4.26572 4.44817 4.60868 4.67631 4.79071 4.84741 4.99296 5.02381 5.14390 5.26243 5.39174 5.54940 5.63619 5.77758 5.78839 6.08246 6.27695 6.59597 6.73029 8.15958 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.013641 B = 0.005009 C = 0.004827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.216884 B = 5588.508894 C = 5799.873126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.060 3.940 3 Si 0.941 3.059 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.253 1.253 7 C -0.485 4.485 8 H 0.073 0.927 9 C 0.065 3.935 10 C -0.044 4.044 11 F -0.159 7.159 12 C -0.115 4.115 13 C -0.183 4.183 14 C -0.072 4.072 15 C -0.147 4.147 16 C -0.045 4.045 17 C -0.043 4.043 18 C -0.201 4.201 19 C 0.522 3.478 20 F -0.182 7.182 21 F -0.171 7.171 22 F -0.177 7.177 23 C -0.044 4.044 24 C -0.152 4.152 25 C 0.120 3.880 26 F -0.141 7.141 27 H 0.290 0.710 28 H 0.138 0.862 29 H 0.155 0.845 30 H 0.143 0.857 31 H 0.148 0.852 32 H 0.175 0.825 33 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.120 -6.109 8.495 14.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.155 4.155 3 Si 0.765 3.235 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.176 1.176 7 C -0.515 4.515 8 H 0.091 0.909 9 C 0.062 3.938 10 C -0.064 4.064 11 F -0.139 7.139 12 C -0.134 4.134 13 C -0.202 4.202 14 C -0.090 4.090 15 C -0.149 4.149 16 C -0.046 4.046 17 C -0.061 4.061 18 C -0.203 4.203 19 C 0.467 3.533 20 F -0.163 7.163 21 F -0.152 7.152 22 F -0.158 7.158 23 C -0.062 4.062 24 C -0.170 4.170 25 C 0.101 3.899 26 F -0.120 7.120 27 H 0.101 0.899 28 H 0.155 0.845 29 H 0.172 0.828 30 H 0.160 0.840 31 H 0.165 0.835 32 H 0.192 0.808 33 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 9.800 -5.992 8.471 14.272 hybrid contribution -0.692 0.991 -0.538 1.323 sum 9.108 -5.000 7.933 13.073 Atomic orbital electron populations 1.69698 1.08977 1.31019 1.37252 1.26600 0.95163 1.03426 0.90326 0.85961 0.80227 0.78331 0.78993 1.18682 1.20388 1.17599 1.19130 0.94269 0.95956 1.42123 0.90900 1.17798 0.93566 0.92296 0.90183 1.18357 0.88388 1.04949 0.94735 1.91191 1.69069 1.76203 1.77393 1.21158 0.90741 1.00444 1.01062 1.20817 0.99849 1.01848 0.97637 1.21221 0.93730 0.97610 0.96444 1.18703 0.93427 1.06511 0.96227 1.18644 0.97520 0.94483 0.93954 1.20943 0.97930 0.97954 0.89314 1.19947 1.05934 1.02629 0.91755 1.17997 0.75332 0.74605 0.85316 1.93228 1.70930 1.66024 1.86135 1.93188 1.96154 1.50816 1.75029 1.93186 1.40469 1.86244 1.95943 1.21037 0.92793 0.93996 0.98351 1.21282 1.03027 1.02484 0.90234 1.18442 0.95079 0.95338 0.81089 1.91488 1.86142 1.90812 1.43531 0.89924 0.84455 0.82775 0.83967 0.83462 0.80758 0.81353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -47.57 13.93 21.85 0.30 -47.26 16 2 C 0.06 3.32 4.98 85.29 0.43 3.74 16 3 Si 0.94 44.78 24.72 68.60 1.70 46.47 16 4 H -0.26 -12.45 6.29 99.48 0.63 -11.82 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.25 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.49 -26.82 8.30 23.34 0.19 -26.63 16 8 H 0.07 4.30 5.87 -2.91 -0.02 4.28 16 9 C 0.06 3.20 4.57 -21.08 -0.10 3.10 16 10 C -0.04 -2.11 5.65 22.84 0.13 -1.98 16 11 F -0.16 -8.12 12.91 44.97 0.58 -7.54 16 12 C -0.12 -4.40 9.99 22.29 0.22 -4.18 16 13 C -0.18 -5.96 10.03 22.38 0.22 -5.74 16 14 C -0.07 -2.48 9.71 22.45 0.22 -2.26 16 15 C -0.15 -6.17 5.06 -19.64 -0.10 -6.27 16 16 C -0.05 -1.70 4.72 -20.01 -0.09 -1.80 16 17 C -0.04 -1.38 9.09 22.53 0.20 -1.17 16 18 C -0.20 -5.44 5.45 -19.90 -0.11 -5.55 16 19 C 0.52 12.74 3.36 71.24 0.24 12.98 16 20 F -0.18 -4.86 17.30 44.97 0.78 -4.09 16 21 F -0.17 -3.70 16.45 44.97 0.74 -2.96 16 22 F -0.18 -4.37 16.45 44.97 0.74 -3.63 16 23 C -0.04 -1.06 9.39 22.33 0.21 -0.85 16 24 C -0.15 -4.23 10.01 22.28 0.22 -4.00 16 25 C 0.12 4.42 6.17 22.66 0.14 4.56 16 26 F -0.14 -6.00 15.44 44.97 0.69 -5.31 16 27 H 0.29 14.95 8.30 -92.71 -0.77 14.18 16 28 H 0.14 4.42 8.06 -2.91 -0.02 4.40 16 29 H 0.15 3.70 8.06 -2.91 -0.02 3.68 16 30 H 0.14 3.86 8.06 -2.91 -0.02 3.84 16 31 H 0.15 4.35 7.60 -2.91 -0.02 4.32 16 32 H 0.18 2.90 7.59 -2.91 -0.02 2.87 16 33 H 0.17 3.67 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -62.44 305.77 8.68 -53.76 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: 1.12 Total: 6.58 kcal Atomic # 6 Polarization: -38.06 SS G_CDS: 2.03 Total: -36.03 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: 0.30 Total: -47.26 kcal Atomic # 9 Polarization: -27.06 SS G_CDS: 3.53 Total: -23.52 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.70 Total: 46.47 kcal Total: -62.44 8.68 -53.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241100471.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.893 kcal (2) G-P(sol) polarization free energy of solvation -62.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds