Wall clock time and date at job start Tue Mar 31 2020 15:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30785 * 1 3 3 Si 1.86802 * 120.00494 * 2 1 4 4 H 1.48501 * 109.47422 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46995 * 299.99534 * 3 2 1 6 6 H 1.48500 * 109.47076 * 59.99257 * 3 2 1 7 7 C 1.40053 * 119.99920 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00264 * 169.32438 * 7 2 1 9 9 C 1.40871 * 119.99645 * 349.32605 * 7 2 1 10 10 C 1.40724 * 120.31815 * 330.64493 * 9 7 2 11 11 C 1.37628 * 119.84431 * 180.29517 * 10 9 7 12 12 F 1.35099 * 119.74751 * 179.67907 * 11 10 9 13 13 C 1.39203 * 120.50843 * 359.70798 * 11 10 9 14 14 C 1.37998 * 120.65001 * 0.02562 * 13 11 10 15 15 C 1.39175 * 120.13489 * 0.02562 * 14 13 11 16 16 C 1.47812 * 120.25410 * 179.97438 * 15 14 13 17 17 C 1.39711 * 120.12392 * 104.13348 * 16 15 14 18 18 C 1.37834 * 119.87626 * 179.97438 * 17 16 15 19 19 C 1.38672 * 120.12406 * 0.25205 * 18 17 16 20 20 F 1.35098 * 119.87489 * 179.74945 * 19 18 17 21 21 C 1.38635 * 120.24835 * 359.49147 * 19 18 17 22 22 C 1.37875 * 120.12132 * 0.51048 * 21 19 18 23 23 C 1.50707 * 120.05929 * 179.72396 * 22 21 19 24 24 F 1.39897 * 109.47115 * 5.32192 * 23 22 21 25 25 F 1.39896 * 109.46974 * 125.32583 * 23 22 21 26 26 F 1.39902 * 109.46739 * 245.32209 * 23 22 21 27 27 H 0.97006 * 119.99360 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.07530 * 359.97438 * 10 9 7 29 29 H 1.07994 * 119.67265 * 179.97438 * 13 11 10 30 30 H 1.07997 * 119.93270 * 179.97438 * 14 13 11 31 31 H 1.08000 * 120.06308 * 0.02562 * 17 16 15 32 32 H 1.07996 * 119.94058 * 179.97438 * 18 17 16 33 33 H 1.08003 * 119.93602 * 180.25760 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 3.7020 1.3463 0.0006 5 1 1.8834 2.3964 -1.2126 6 1 1.8832 2.3965 1.2124 7 6 2.0081 -1.2129 0.0005 8 1 3.0740 -1.2211 -0.1727 9 6 1.3219 -2.4222 0.2271 10 6 0.1625 -2.4425 1.0243 11 6 -0.4968 -3.6304 1.2441 12 9 -1.6060 -3.6487 2.0151 13 6 -0.0291 -4.8133 0.6787 14 6 1.1026 -4.8163 -0.1109 15 6 1.7908 -3.6306 -0.3501 16 6 3.0037 -3.6309 -1.1950 17 6 2.9460 -3.1478 -2.5046 18 6 4.0802 -3.1499 -3.2878 19 6 5.2758 -3.6352 -2.7799 20 9 6.3832 -3.6397 -3.5536 21 6 5.3402 -4.1109 -1.4793 22 6 4.2118 -4.1136 -0.6869 23 6 4.2820 -4.6368 0.7247 24 9 5.6087 -4.9475 1.0415 25 9 3.8079 -3.6609 1.6078 26 9 3.4943 -5.7877 0.8350 27 1 -0.4849 0.8401 -0.0004 28 1 -0.2062 -1.5289 1.4667 29 1 -0.5568 -5.7379 0.8605 30 1 1.4554 -5.7409 -0.5434 31 1 2.0146 -2.7725 -2.9023 32 1 4.0367 -2.7771 -4.3005 33 1 6.2749 -4.4839 -1.0874 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241124887.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:09 Heat of formation + Delta-G solvation = -203.466319 kcal Electronic energy + Delta-G solvation = -28276.673776 eV Core-core repulsion = 23487.687325 eV Total energy + Delta-G solvation = -4788.986451 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.66625 -48.74337 -47.75950 -47.24880 -47.00968 -39.14407 -37.14059 -33.89713 -31.86421 -31.45528 -29.89778 -28.02001 -25.87977 -25.39299 -22.72695 -21.99267 -21.37647 -20.22920 -18.31482 -18.02963 -17.93882 -17.71367 -16.20916 -16.06473 -15.89362 -15.77735 -15.43963 -15.03889 -14.73706 -14.41610 -14.19383 -13.97384 -13.74713 -13.58322 -13.27811 -13.22909 -13.21101 -13.08130 -12.92881 -12.62116 -12.44711 -12.12785 -11.79526 -11.70863 -11.28348 -11.21938 -10.95923 -10.74203 -10.47528 -10.18039 -9.82482 -9.45094 -9.09935 -8.30841 -7.71591 -7.44762 -6.97770 -4.70380 1.10452 1.35244 2.40001 2.62582 2.96333 3.01634 3.01795 3.09310 3.63276 3.75896 4.05937 4.33531 4.39492 4.62519 4.90915 4.99739 5.09169 5.22313 5.29032 5.54158 5.57558 5.84412 6.07451 6.10074 6.21581 6.28822 6.38405 6.66081 6.76419 6.79427 6.95669 7.02254 7.30312 7.45271 7.57197 7.70795 7.96735 8.30947 8.56310 8.60057 9.92499 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.010024 B = 0.006706 C = 0.004968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2792.746640 B = 4174.240123 C = 5634.426763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.257 1.257 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.442 4.442 8 H 0.084 0.916 9 C 0.162 3.838 10 C -0.189 4.189 11 C 0.112 3.888 12 F -0.165 7.165 13 C -0.272 4.272 14 C -0.033 4.033 15 C -0.225 4.225 16 C 0.075 3.925 17 C -0.076 4.076 18 C -0.124 4.124 19 C 0.071 3.929 20 F -0.143 7.143 21 C -0.112 4.112 22 C -0.166 4.166 23 C 0.514 3.486 24 F -0.189 7.189 25 F -0.160 7.160 26 F -0.174 7.174 27 H 0.285 0.715 28 H 0.133 0.867 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.144 0.856 32 H 0.137 0.863 33 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.548 -3.957 -3.602 8.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.144 4.144 3 Si 0.733 3.267 4 H -0.181 1.181 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.471 4.471 8 H 0.102 0.898 9 C 0.159 3.841 10 C -0.209 4.209 11 C 0.093 3.907 12 F -0.144 7.144 13 C -0.292 4.292 14 C -0.051 4.051 15 C -0.227 4.227 16 C 0.075 3.925 17 C -0.094 4.094 18 C -0.143 4.143 19 C 0.052 3.948 20 F -0.121 7.121 21 C -0.131 4.131 22 C -0.167 4.167 23 C 0.460 3.540 24 F -0.171 7.171 25 F -0.141 7.141 26 F -0.155 7.155 27 H 0.097 0.903 28 H 0.151 0.849 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.162 0.838 32 H 0.155 0.845 33 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.343 -3.799 -3.568 8.210 hybrid contribution 0.320 0.714 0.213 0.811 sum 6.663 -3.085 -3.355 8.072 Atomic orbital electron populations 1.69762 1.07595 1.29802 1.33615 1.25990 0.94837 1.01619 0.91981 0.86210 0.81084 0.80492 0.78886 1.18083 1.19650 1.19441 1.19553 0.96178 0.90038 1.41296 0.89796 1.17128 0.89563 0.90831 0.86550 1.21297 0.99833 0.95783 1.03989 1.17812 0.84179 0.95392 0.93351 1.91347 1.51680 1.97571 1.73838 1.20186 1.02742 0.95971 1.10333 1.20341 0.93565 0.95523 0.95682 1.18492 1.00045 0.95232 1.08913 1.18550 0.91362 0.89863 0.92729 1.21297 0.98340 0.97293 0.92442 1.21254 0.91536 1.00190 1.01278 1.17442 0.83378 1.04564 0.89413 1.91472 1.51369 1.94857 1.74450 1.20692 0.98845 1.00881 0.92676 1.20016 0.95605 1.08073 0.93018 1.18056 0.72875 0.75999 0.87094 1.93113 1.36441 1.93392 1.94126 1.93290 1.88033 1.62028 1.70711 1.93203 1.74472 1.51144 1.96696 0.90348 0.84891 0.87846 0.87961 0.83775 0.84472 0.84075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.51 10.87 55.55 0.60 -17.90 16 2 C 0.08 1.72 5.25 -17.32 -0.09 1.63 16 3 Si 0.91 17.39 29.57 -169.99 -5.03 12.36 16 4 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 5 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 6 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 7 C -0.44 -10.43 8.33 -37.91 -0.32 -10.74 16 8 H 0.08 1.96 7.34 -52.49 -0.39 1.57 16 9 C 0.16 3.86 5.40 -106.57 -0.58 3.29 16 10 C -0.19 -4.65 8.61 -38.87 -0.33 -4.98 16 11 C 0.11 2.61 7.28 -39.45 -0.29 2.33 16 12 F -0.17 -3.77 17.26 2.25 0.04 -3.73 16 13 C -0.27 -5.84 10.01 -39.31 -0.39 -6.24 16 14 C -0.03 -0.67 8.04 -39.32 -0.32 -0.99 16 15 C -0.23 -4.80 3.65 -104.24 -0.38 -5.18 16 16 C 0.08 1.41 4.11 -104.90 -0.43 0.98 16 17 C -0.08 -1.25 9.65 -39.18 -0.38 -1.63 16 18 C -0.12 -1.76 10.01 -39.57 -0.40 -2.16 16 19 C 0.07 1.05 7.31 -39.27 -0.29 0.76 16 20 F -0.14 -2.04 17.26 2.25 0.04 -2.00 16 21 C -0.11 -1.71 9.40 -39.57 -0.37 -2.08 16 22 C -0.17 -2.89 5.41 -104.22 -0.56 -3.45 16 23 C 0.51 9.17 2.89 36.01 0.10 9.28 16 24 F -0.19 -3.04 15.99 2.25 0.04 -3.00 16 25 F -0.16 -3.24 16.03 2.25 0.04 -3.20 16 26 F -0.17 -3.13 15.02 2.25 0.03 -3.09 16 27 H 0.29 6.14 8.30 -40.82 -0.34 5.81 16 28 H 0.13 3.42 6.26 -52.49 -0.33 3.09 16 29 H 0.10 2.00 8.06 -52.49 -0.42 1.58 16 30 H 0.10 1.88 7.68 -52.49 -0.40 1.48 16 31 H 0.14 2.32 8.06 -52.49 -0.42 1.90 16 32 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 33 H 0.14 1.88 7.17 -52.48 -0.38 1.51 16 LS Contribution 309.58 15.07 4.67 4.67 Total: -1.00 -24.49 309.58 -6.49 -30.97 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -1.90 Total: 4.12 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: -5.02 Total: -19.19 kcal Atomic # 7 Polarization: -18.51 SS G_CDS: 0.60 Total: -17.90 kcal Atomic # 9 Polarization: -15.21 SS G_CDS: 0.18 Total: -15.02 kcal Atomic # 14 Polarization: 17.39 SS G_CDS: -5.03 Total: 12.36 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -24.49 -6.49 -30.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241124887.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.492 kcal (2) G-P(sol) polarization free energy of solvation -24.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds