Wall clock time and date at job start Tue Mar 31 2020 15:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30785 * 1 3 3 Si 1.86802 * 120.00494 * 2 1 4 4 H 1.48501 * 109.47422 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46995 * 299.99534 * 3 2 1 6 6 H 1.48500 * 109.47076 * 59.99257 * 3 2 1 7 7 C 1.40053 * 119.99920 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00264 * 169.32438 * 7 2 1 9 9 C 1.40871 * 119.99645 * 349.32605 * 7 2 1 10 10 C 1.40724 * 120.31815 * 330.64493 * 9 7 2 11 11 C 1.37628 * 119.84431 * 180.29517 * 10 9 7 12 12 F 1.35099 * 119.74751 * 179.67907 * 11 10 9 13 13 C 1.39203 * 120.50843 * 359.70798 * 11 10 9 14 14 C 1.37998 * 120.65001 * 0.02562 * 13 11 10 15 15 C 1.39175 * 120.13489 * 0.02562 * 14 13 11 16 16 C 1.47812 * 120.25410 * 179.97438 * 15 14 13 17 17 C 1.39711 * 120.12392 * 104.13348 * 16 15 14 18 18 C 1.37834 * 119.87626 * 179.97438 * 17 16 15 19 19 C 1.38672 * 120.12406 * 0.25205 * 18 17 16 20 20 F 1.35098 * 119.87489 * 179.74945 * 19 18 17 21 21 C 1.38635 * 120.24835 * 359.49147 * 19 18 17 22 22 C 1.37875 * 120.12132 * 0.51048 * 21 19 18 23 23 C 1.50707 * 120.05929 * 179.72396 * 22 21 19 24 24 F 1.39897 * 109.47115 * 5.32192 * 23 22 21 25 25 F 1.39896 * 109.46974 * 125.32583 * 23 22 21 26 26 F 1.39902 * 109.46739 * 245.32209 * 23 22 21 27 27 H 0.97006 * 119.99360 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.07530 * 359.97438 * 10 9 7 29 29 H 1.07994 * 119.67265 * 179.97438 * 13 11 10 30 30 H 1.07997 * 119.93270 * 179.97438 * 14 13 11 31 31 H 1.08000 * 120.06308 * 0.02562 * 17 16 15 32 32 H 1.07996 * 119.94058 * 179.97438 * 18 17 16 33 33 H 1.08003 * 119.93602 * 180.25760 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 3.7020 1.3463 0.0006 5 1 1.8834 2.3964 -1.2126 6 1 1.8832 2.3965 1.2124 7 6 2.0081 -1.2129 0.0005 8 1 3.0740 -1.2211 -0.1727 9 6 1.3219 -2.4222 0.2271 10 6 0.1625 -2.4425 1.0243 11 6 -0.4968 -3.6304 1.2441 12 9 -1.6060 -3.6487 2.0151 13 6 -0.0291 -4.8133 0.6787 14 6 1.1026 -4.8163 -0.1109 15 6 1.7908 -3.6306 -0.3501 16 6 3.0037 -3.6309 -1.1950 17 6 2.9460 -3.1478 -2.5046 18 6 4.0802 -3.1499 -3.2878 19 6 5.2758 -3.6352 -2.7799 20 9 6.3832 -3.6397 -3.5536 21 6 5.3402 -4.1109 -1.4793 22 6 4.2118 -4.1136 -0.6869 23 6 4.2820 -4.6368 0.7247 24 9 5.6087 -4.9475 1.0415 25 9 3.8079 -3.6609 1.6078 26 9 3.4943 -5.7877 0.8350 27 1 -0.4849 0.8401 -0.0004 28 1 -0.2062 -1.5289 1.4667 29 1 -0.5568 -5.7379 0.8605 30 1 1.4554 -5.7409 -0.5434 31 1 2.0146 -2.7725 -2.9023 32 1 4.0367 -2.7771 -4.3005 33 1 6.2749 -4.4839 -1.0874 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241124887.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:08 Heat of formation + Delta-G solvation = -211.535602 kcal Electronic energy + Delta-G solvation = -28277.023687 eV Core-core repulsion = 23487.687325 eV Total energy + Delta-G solvation = -4789.336361 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.07856 -49.89959 -49.58109 -48.62311 -48.49190 -40.53419 -38.73801 -35.61436 -33.20214 -32.85927 -31.62844 -29.56791 -27.46592 -26.88124 -24.12433 -23.43118 -23.01764 -21.79500 -19.66444 -19.44455 -19.40920 -19.35186 -17.84325 -17.50596 -17.26788 -17.02832 -16.76349 -16.57216 -16.42321 -16.23421 -15.54446 -15.42066 -15.17502 -14.99567 -14.82610 -14.69163 -14.65299 -14.45152 -14.32926 -14.19469 -14.04518 -13.48024 -13.40858 -13.16619 -12.85365 -12.82010 -12.46709 -12.17322 -12.04345 -11.86564 -11.51680 -11.14355 -10.32636 -9.63306 -9.47866 -9.17091 -8.67554 -6.48060 -0.16241 0.08838 0.68149 0.91073 1.39477 1.46863 1.52579 1.71461 2.17142 2.35934 2.62150 2.71651 3.06068 3.34970 3.46483 3.49730 3.76453 3.84450 3.85033 4.01552 4.31057 4.40769 4.53223 4.59127 4.89859 4.91359 4.98868 5.04046 5.13127 5.25007 5.40819 5.59362 5.66021 5.75492 5.84566 5.95575 6.21102 6.53403 6.81730 6.84235 8.25162 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.010024 B = 0.006706 C = 0.004968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2792.746640 B = 4174.240123 C = 5634.426763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.040 3.960 3 Si 0.972 3.028 4 H -0.257 1.257 5 H -0.262 1.262 6 H -0.269 1.269 7 C -0.459 4.459 8 H 0.081 0.919 9 C 0.141 3.859 10 C -0.217 4.217 11 C 0.096 3.904 12 F -0.167 7.167 13 C -0.273 4.273 14 C -0.035 4.035 15 C -0.212 4.212 16 C 0.048 3.952 17 C -0.081 4.081 18 C -0.107 4.107 19 C 0.079 3.921 20 F -0.135 7.135 21 C -0.107 4.107 22 C -0.172 4.172 23 C 0.513 3.487 24 F -0.178 7.178 25 F -0.179 7.179 26 F -0.176 7.176 27 H 0.291 0.709 28 H 0.112 0.888 29 H 0.125 0.875 30 H 0.128 0.872 31 H 0.143 0.857 32 H 0.171 0.829 33 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.420 -4.293 -5.236 10.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.176 4.176 3 Si 0.793 3.207 4 H -0.180 1.180 5 H -0.186 1.186 6 H -0.194 1.194 7 C -0.488 4.488 8 H 0.099 0.901 9 C 0.138 3.862 10 C -0.237 4.237 11 C 0.077 3.923 12 F -0.146 7.146 13 C -0.293 4.293 14 C -0.053 4.053 15 C -0.214 4.214 16 C 0.047 3.953 17 C -0.099 4.099 18 C -0.126 4.126 19 C 0.060 3.940 20 F -0.114 7.114 21 C -0.126 4.126 22 C -0.173 4.173 23 C 0.459 3.541 24 F -0.159 7.159 25 F -0.160 7.160 26 F -0.157 7.157 27 H 0.102 0.898 28 H 0.130 0.870 29 H 0.143 0.857 30 H 0.145 0.855 31 H 0.161 0.839 32 H 0.188 0.812 33 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 8.215 -4.152 -5.204 10.574 hybrid contribution -0.199 0.708 0.674 0.998 sum 8.016 -3.444 -4.530 9.830 Atomic orbital electron populations 1.69823 1.08873 1.30820 1.34531 1.26707 0.95394 1.04310 0.91235 0.85280 0.79653 0.76721 0.79031 1.18035 1.18638 1.19417 1.19630 0.96019 0.90678 1.42469 0.90063 1.17389 0.89651 0.92193 0.86920 1.21238 1.01306 0.95554 1.05590 1.18019 0.84380 0.95903 0.93966 1.91330 1.51732 1.97607 1.73937 1.20474 1.03010 0.96010 1.09757 1.20659 0.93053 0.96407 0.95206 1.18749 1.00463 0.94459 1.07692 1.18507 0.90877 0.92323 0.93546 1.21290 0.99309 0.97418 0.91917 1.21501 0.90287 0.98494 1.02293 1.17472 0.83654 1.03699 0.89176 1.91502 1.51020 1.94700 1.74170 1.20868 0.98810 1.00176 0.92713 1.19932 0.95911 1.08689 0.92817 1.18163 0.73185 0.75613 0.87184 1.93128 1.35455 1.93256 1.94088 1.93256 1.88386 1.62894 1.71477 1.93191 1.74669 1.51159 1.96722 0.89827 0.87022 0.85659 0.85451 0.83921 0.81158 0.82089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -39.62 10.87 21.85 0.24 -39.39 16 2 C 0.04 1.86 5.25 85.29 0.45 2.31 16 3 Si 0.97 35.61 29.57 68.60 2.03 37.64 16 4 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 5 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 6 H -0.27 -9.76 7.11 99.48 0.71 -9.06 16 7 C -0.46 -22.04 8.33 23.36 0.19 -21.85 16 8 H 0.08 3.83 7.34 -2.91 -0.02 3.81 16 9 C 0.14 6.88 5.40 -21.12 -0.11 6.77 16 10 C -0.22 -11.08 8.61 22.73 0.20 -10.89 16 11 C 0.10 4.61 7.28 22.36 0.16 4.77 16 12 F -0.17 -7.79 17.26 44.97 0.78 -7.02 16 13 C -0.27 -11.60 10.01 22.44 0.22 -11.38 16 14 C -0.04 -1.42 8.04 22.44 0.18 -1.24 16 15 C -0.21 -9.01 3.65 -19.62 -0.07 -9.08 16 16 C 0.05 1.74 4.11 -20.04 -0.08 1.65 16 17 C -0.08 -2.53 9.65 22.53 0.22 -2.32 16 18 C -0.11 -2.69 10.01 22.28 0.22 -2.47 16 19 C 0.08 2.05 7.31 22.47 0.16 2.21 16 20 F -0.14 -3.32 17.26 44.97 0.78 -2.54 16 21 C -0.11 -2.95 9.40 22.28 0.21 -2.74 16 22 C -0.17 -5.70 5.41 -19.60 -0.11 -5.80 16 23 C 0.51 17.72 2.89 71.24 0.21 17.92 16 24 F -0.18 -5.40 15.99 44.97 0.72 -4.68 16 25 F -0.18 -7.27 16.03 44.97 0.72 -6.55 16 26 F -0.18 -6.12 15.02 44.97 0.68 -5.44 16 27 H 0.29 12.85 8.30 -92.70 -0.77 12.08 16 28 H 0.11 6.08 6.26 -2.91 -0.02 6.07 16 29 H 0.13 4.69 8.06 -2.91 -0.02 4.66 16 30 H 0.13 4.45 7.68 -2.91 -0.02 4.42 16 31 H 0.14 4.44 8.06 -2.91 -0.02 4.41 16 32 H 0.17 3.13 8.06 -2.91 -0.02 3.10 16 33 H 0.16 3.75 7.17 -2.91 -0.02 3.72 16 Total: -1.00 -53.05 309.58 9.18 -43.86 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 1.20 Total: 16.24 kcal Atomic # 6 Polarization: -34.17 SS G_CDS: 2.05 Total: -32.12 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 0.24 Total: -39.39 kcal Atomic # 9 Polarization: -29.90 SS G_CDS: 3.67 Total: -26.23 kcal Atomic # 14 Polarization: 35.61 SS G_CDS: 2.03 Total: 37.64 kcal Total: -53.05 9.18 -43.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241124887.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.672 kcal (2) G-P(sol) polarization free energy of solvation -53.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds